Agenda
Friday, October 15th
9 AM - 6PM
9.00 AM - 9.15 AM
Welcoming Remarks
James Glazier, Indiana University
9.15 AM - 10.00 AM
Multi-Cell, Agent-Based Modeling
Using Flame
Rod Smallwood, University of Sheffield
10.00 AM - 10.45 AM
Modeling Tissues using Center
Models
Dirk Drasdo and Stefan Höhme INRIA
10.45 AM - 11.00 AM
Break
11.00 AM - 11.45 AM
CellML Modularity and the Physiome Model Repository
David Nickerson, University of Auckland
11.45 AM - 12.30 AM
Towards Virtual Tissues Multi-Cell
Modeling Using CompuCell3D
Maciej Swat, Indiana University
12.30 PM - 2.00 PM
Lunch
2.00 PM - 2.45 PM
Towards Virtual Tissues:
Multicell Specification, Standardization,
Sharing and Reuse
James Glazier, Indiana University
2.45 PM - 3.30 PM
Multi-scale, multi-cell modeling
using CHASTE
James Osborne and David Gavaghan, Oxford University
3.30 PM - 3.45 PM
Break
3.45 PM - 4.30 PM
Defining standards for the
description of multi-cell, multi-scale models
Nick Monk, University of Nottingham
4.30 PM - 6.00 PM
Group Project: Term Exploration & Discussion
Saturday, October 16th
9 AM - 6PM
9.00 AM - 9.45 AM
Ontology for representing
results of time lapse experiment analysis
Patryk Burek, University of Leipzig
9.45 AM - 10.30 AM
Bridging Experiment and Modeling
in Studies of Morphogenesis
Nadine Peyriéras, CNRS - NED, Institut de Neurobiologie Alfred Fessard
10.30 AM - 11.15 AM
Cell Behavior Ontology Current
Status, Roadmap, Challenges
James Sluka, Indiana University
11.15 AM - 11.30 AM
SBML Overview
Mike Hucka, California Institute of Technology
11.30 AM - 11.45 AM
GemCell
Hila Kroll
11.45 AM - 12.30 PM
Basic high level terms for CBO and Model Specification Langauge
12.30 AM - 2.00 PM
Lunch
2.00 AM - 3.30 PM
Group discussion / parallel sessions:
Key Use cases
Relevant existing ontologies and languages
3.30 AM - 3.45 PM
Break
3.45 AM - 5.00 PM
What existing ontologies and languages can supply needed components?
What existing ontologies and
languages can act as models
for CBO development?
5.00 AM - 6.00 PM
Next Steps? Discussion