Cell Behavior Ontology
and Standards for
Multicellular Modeling
Specification Workshop
October 15th-16th 2010
Informatics Forum of the University of Edinburgh
Edinburgh, Scotland, UK

Building a functional simulation of cells, a tissue, organ or even an entire organism requires an unprecedented effort to fuse techniques derived from biology, chemistry, physics, computer science and information science. Developing models that can be explored using a range of simulation techniques requires a common language capable of describing heterogeneous features and behaviors at various length-scales ranging from molecule to organism. While languages exist for some necessary subareas (e.g. cell physiology, molecular dynamics, and systems biology), many researchers still use ad-hoc formats and vocabulary to describe cell-based multi-cell models (e.g. Cellular Potts Models, Center Models, FEM).

The creation of the Cell Behavior Ontology is an essential first step in providing a universally agreed upon means to describe cell behaviors and consequently (in the longer term) achieve a standardization level similar to the one that the Systems Biology community has achieved with SBML, CellML and the Foundational Model of Anatomy. Just as applications conforming to SBML or CellML can share models encoded in the two standards, so applications conforming to the CBO derived standards (like the proposed Cell Behavior Model Specification Language CBMSL) will achieve similar capacity for model sharing.

Fees and Logistics
There is a registration fee of £65 ($100) if you also register for ICSB, or £85 ($130) for the workshop alone. We expect to provide (pending final funding) limited travel funds for speakers (up to $300) and waive registration fee. Participation in the ICSB conference is not required to attend the CBO workshop, however we strongly encourage you consider attending ICSB.
Registration and Contact Information
To register visit:
http://www.icsb2010.org.uk/registrationbookings/
and register for Workshop 7: Cell Behavior Ontology and Cell Behavior Markup Language. Should you have any questions regarding the workshop please feel free to contact any member of the organizing committee ( Dr. James A. Glazier, Dr. Nick Monk, Dr. Maciej Swat or Dr. Jim Sluka).
Lodging and Local Information
For information about hotels, and any other issues regarding your stay in Edinburgh please visit the ICSB website at http://www.icsb2010.org.uk or contact Fiona Clark (fclark1 'at' inf.ed.ac.uk).
Venue
The conference will be held at the School of Informatics, Informatics Forum of the University of Edinburgh.
10 Crichton Street Edinburgh, EH8 9AB, Scotland UK.
Planned Speakers
James GlazierIndiana University
Rod SmallwoodUniversity of Sheffield
Dirk DrasdoINRIA
Stefan HöhmeINRIA
Thomas CokelearINRIA
Christophe GodinINRIA
Maciej SwatIndiana University
Nick MonkUniversity of Nottingham
Patryk BurekUniversity of Leipzig
James OsborneOxford University
David GavaghanOxford University
Nadine PeyriérasInstitut de Neurobiologie Alfred Fessard
Organizers
  • Dr. James A. Glazier
  • Dr. Nick Monk
  • Dr. Maciej Swat
  • Dr. Jim Sluka
For More Information Contact
Jim Sluka (jsluka 'at' indiana.edu)
James A Glazier (glazier 'at' indiana.edu)
http://biocomplexity.indiana.edu/events/CBO3/
Images Provided By: Vittorio Cristini, Lance Davidson