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We have cropped the original images and removed the gelation background.
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We have constructed slices in two orthogonal panels (sagittal and coronal views); aligning required - linear interpolation between slices; best fit of features as a function of translations and rotations.
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The resulting images were converted to PPM formats (1728x1878).
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Image Clipper Application program (written in java) allows to cut the selected portion of the image and to apply the procedure to all images in the stack (head - 256x316 700 images)
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Data stored in voxel representation in Illustra object-relational database (x,y,z,r,g,b).
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