Biblio

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2013
[fg-2719] Cunha, L., R. Montiel, M. Novo, P. Orozco-terWengel, A. Rodrigues, A. J. Morgan, and P. Kille, "Living on a volcano’s edge: genetic isolation of an extremophile terrestrial metazoan", Heredtiy, 09/2013.
[fg-2587] Keahey, K., D. Lifka, M. Parashar, W. Smith, C. Song, and S. Wang, XSEDE BOF: Science Clouds or It Takes a Village to Give a Talk on Cloud Computing, , 07/24/2013.  Download: xsede2013bof.pdf (9.84 MB)
[fg-2034] Fox, G., G. von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, and A. Grimshaw, "FutureGrid - a reconfigurable testbed for Cloud, HPC, and Grid Computing", Contemporary High Performance Computing: From Petascale toward Exascale: Chapman & Hall, 04/2013.  Download: vonLaszewski-fg-bookchapter.pdf (1.6 MB)
[10.1371/journal.pcbi.1002950] Larsson, P., and P. M. Kasson, "Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models", PLoS Comput Biol, vol. 9, no. 3: Public Library of Science, pp. e1002950, 03, 2013. Abstract  Download: journal.pcbi_.1002950.pdf (1022.66 KB)
[Kwan:2013hy] Kwan, J. C., and E. W. Schmidt, "Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.", PloS One, vol. 8, no. 12, pp. e80822, 2013.
2012
[fg-2045] von Laszewski, G., H. Lee, J. Diaz, F. Wang, K. Tanaka, S. Karavinkoppa, G. C. Fox, and T. Furlani, "Design of a Dynamic Provisioning System for a Federated Cloud and Bare-metal Environment", Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, CA, IEEE, 09/2012.  Download: vonLaszewski-federated-cloud-07-14-2012.pdf (1.06 MB)
[fg-2076] Kinney, J., "Commercial IaaS/PaaS I: AWS for Scientists", Science Cloud Summer School 2012, Bloomington, IN, Amazon Web Services, 07/2012.
[fg-2070] Bresnahan, J., K. Keahey, and M. Wilde, "Nimbus Platform: Managing Deployments in Multi-Cloud Environments", Science Cloud Summer School 2012, Bloomington, IN, University of Chicago/Argonne National Laboratory, 07/2012.  Download: Swift for XSEDE Cloud Tutorial.2012.0716.pptx (7.81 MB); cloudinitd_and_phantom.pptx (21.27 MB)
[fg-2068] Bresnahan, J., and K. Keahey, "Nimbus: Introduction to IaaS Cloud Computing for Science", Science Cloud Summer School 2012, Bloomington, IN, University of Chicago/Argonne National Laboratory, 07/2012.  Download: nimbus intro.pptx (8.34 MB)
[fg-2072] Klinginsmith, J., "Virtual Clusters Supporting MapReduce in Cloud", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-1936] von Laszewski, G., S. Crago, K. Keahey, T. Omtzigt, and B. Renski, OpenStack Conference: Panel on Cloud and HPC, , San Francisco, 05/2012.
[fg-1471] Desprez, F., G. Fox, E. Jeannot, K. Keahey, M. Kozuch, D. Margery, P. Neyron, L. Nussbaum, C. Perez, O. Richard, et al., "Supporting Experimental Computer Science", Published as ANL MCS Technical Memo 326, Argonne, Argonne National Laboratory, 03/2012.
[las12fg-bookchapter] Fox, G. C., G. von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, and A. Grimshaw, Contemporary HPC Architectures, , draft, 2012.
[fg-2392] Kwan, J. C., M. S. Donia, A. W. Han, E. Hirose, M. G. Haygood, and E. W. Schmidt, "Genome streamlining and chemical defense in a coral reef symbiosis", Proceedings of the National Academy of Sciences, 2012.
[fg-2102] Klinginsmith, J., and T. - L. Wu, Virtualbox Appliance Installation Guide, , 2012.
2011
[fg-2292] Klinginsmith, J., M. Mahoui, and Y. M. Wu, "Towards Reproducible eScience in the Cloud", Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, Athens, pp. 582-586, November, 2011. Abstract
[fg-2265] Funika, W., and P. Koperek, "Automatic Scaling in Cloud Computing Environments Based on Business Metrics", Conference on Parallel Programming and Applied Mathematics (PPAM'2011), 11-14 September 2011, Torun, Poland, LNCS, Springer, 2012 : NA, NA, 2011.
[fg-1361] Klinginsmith, J., M. Mahoui, and Y. M. Wu, "Towards Reproducible eScience in the Cloud", CloudCom2011, Athens, Greece, IEEE, 12/2011.
[fg-1271] Bresnahan, J., and K. Keheay, Summary: Status of the FG Nimbus Deployments, , 09/2011.
[fg-1242] Fox, G. C., G. von Laszewski, R. Figueiredo, K. Keaheay, and A. J. Younge, Overview of FutureGrid, , Salt Lake City, UT, TeraGrid 11 Conference, 07/2011.  Download: 001-fg-tg11.pptx (16.9 MB)
[fg-1155] von Laszewski, G., J. Diaz, F. Wang, A. J. Younge, A. Kulshrestha, and G. Fox, "Towards Generic FutureGrid Image Management", TG11: ACM, 07/2011.  Download: TG11-image-repo-overview.docx (178.83 KB); fg-repo-generator-TG11.pptx (1.76 MB)
[fg-1316] Klinginsmith, J., M. Mahoui, and Y. M. Wu, "Towards Reproducible eScience in the Cloud", IEEE International Conference on Cloud Computing Technology and Science, 07/2011.
[fg-1979] Kim, J., S. Maddineni, and S. Jha, "Characterizing Deep Sequencing Analytics using BFAST: Towards a Scalable Distributed Architecture for Next-Generation Sequencing Data", The Second International Workshop on Emerging Computational Methods for the Life Sciences, 06/2011.
[fg-2267] Younge, A. J., A. Wu, B. Rothrock, F. Xin, K. Pagel, R. Konz, and T. Gao, Bioinformatics and Cyberinfrastructure project - 1000 Genomes protein analysis, , 2011.
[fg-1978] Kim, J., S. Maddineni, and S. Jha, "Building Gateways for Life-Science Applications using the Dynamic Application Runtime Environment (DARE) Framework", The 2011 TeraGrid Conference: Extreme Digital Discovery, 2011.
[fg-2266] Funika, W., and P. Koperek, "Scalable Resource Provisioning in the Cloud Using Business Metrics", Advanced Engineering Computing and Applications in Sciences (ADVCOMP'2011), 20-25 November 2011, Lisbon, Portugal, 2011, 2011.
2010
[fg-tutorial-cloudcom-2010] von Laszewski, G., G. Pike, A. Kulshrestha, A. J. Younge, and F. Wang, "FutureGrid Tutorial", CloudCom 2010, Indianapolis, IEEE, 12/2010.
[fg-120] Freeman, T., D. LaBissoniere, P. Marshall, J. Bresnahan, and K. Keahey, Nimbus Elastic Scaling in the Clouds, , vol. CloudCom 2010, Conference Poster, 12/2010.
[fg-50] Bresnahan, J., K. Keahey, T. Freeman, and D. LaBissoniere, Cumulus: Open Source Storage Cloud for Science, , vol. Supercomputing 2010, Conference Poster, 11/2010.
[fg-171] von Laszewski, G., G. C. Fox, F. Wang, A. J. Younge, A. Kulshrestha, G. G. Pike, W. Smith, J. Voeckler, R. J. Figueiredo, J. Fortes, et al., "Design of the FutureGrid Experiment Management Framework", GCE2010 at SC10, New Orleans, IEEE, 11/2010.
[fg-51] Fox, G. C., W. Smith, A. Grimshaw, J. Fortes, K. Keahey, and G. von Laszewski, Rain: Dynamically Provisioning Clouds within FutureGrid, , vol. Supercomputing 2010, Conference Poster, New Orleans, LA, IEEE, 11/2010.
[fg-622] Knepper, R., FutureGrid: Cyberinfrastructure for Computational Research, , TeraGrid Campus Champtions Meeting, 10/2010.
[fg-630] Wang, F., A. Kulshrestha, G. G. Pike, G. von Laszewski, and G. C. Fox, FutureGrid Dynamic Provisioning Experiments Including Hadoop Internal FutureGrid, , 08/2010.
[fg-632] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey, Sky Computing on FutureGrid and Grid'5000 Poster, , TG'10 TeraGrid Users Meeting, 08/2010.
[fg-223] Keahey, K., Grid500 Meeting, , 04/2010.
[fg-2289] Bresnahan, J., K. Keahey, T. Freeman, and D. LaBissoniere, Cumulus, , 2010.
[fg-123] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, and K. Keahey, "Large-Scale Cloud Computing Research: Sky Computing on FutureGrid and Grid’5000", ERCIM News, 83, 2010.
[fg-1058] von Laszewski, G., A. J. Younge, A. Kulshrestha, F. Wang, and G. C. Fox, Rain: Dynamically Provisioning Clouds within FutureGrid, , A slightly modified version was presented as poster at SC10 and CloudCom10, 2010.
[fg-2262] Wu, T. - L., S. N. Baasha, and S. S. Karwa, A Survey of Open-Source Cloud Infrastructure using FutureGrid Testbed, , Bloomington, 2010.
[fg-127] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey, Sky Computing on FutureGrid and Grid’5000, , vol. TeraGrid 2010, Conference Poster, 2010.