Biblio

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A
[fg-1932] Diaz, J., G. von Laszewski, F. Wang, and G. Fox, "Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: jdiaz-IEEECloud2012_id-4656.pdf (555.62 KB); _ImageManagement_slides.ppt (4.12 MB)
[fg-1977] Luckow, A., and S. Jha, "Abstractions for Loosely-Coupled and Ensemble-Based Simulations on Azure", IEEE International Conference on Cloud Computing Technology and Science, 2010.
[fg-1914] Simmhan, Y., Adaptive Energy Forecasting and Information Diffusion for Smart Power Grids, , IEEE SCALE Challenge, 2012.
[fg-2044] , Agenda for the Science Cloud Summer School 2012, , Bloomington, IN, 2012.
[fg-1892] William, T., D. K. Berry, and R. Henschel, "Analysis and Optimization of a Molecular Dynamics Code using PAPI and the Vampir Toolchain", Cray User Group 2012, Stuttgart, CUG, 05/2012. Abstract  Download: 2012-CUG-pap142.pdf (2.82 MB); 2012-CUG-pap142-presentation.pdf (10.5 MB)
[fg-1015] Younge, A. J., R. Henschel, J. Brown, G. von Laszewski, J. Qiu, and G. C. Fox, "Analysis of Virtualization Technologies for High Performance Computing Environments", The 4th International Conference on Cloud Computing (IEEE CLOUD 2011), Washington, DC, IEEE, 07/2011.
[fg-2736] Nelson, J., "Analyzing PAPI Performance on Virtual Machines", VMware Technical Journal, vol. Winter 2013, 2013.
[fg-2065] Schatz, M., "Application: Biology on the Cloud", Science Cloud Summer School 2012, Bloomington, IN, Cold Spring Harbor, 07/2012.
[fg-2086] Stevens, R., "Applications of Cloud: DOE Systems Biology Knowledgebase", Science Cloud Summer School 2012, Bloomington, IN, Argonne and University of Chicago, 07/2012.  Download: Summer-School-2012.ppt (42.12 MB)
[fg-2088] Stanzione, D., "Applications of Cloud: The iPlant Collaborative: Science in the Cloud for Plant Biology", Science Cloud Summer School 2012, Bloomington, IN, TACC, 07/2012.  Download: VSCSE_iPlant_Stanzione_Aug_2012.pdf (14.55 MB)
[fg-2265] Funika, W., and P. Koperek, "Automatic Scaling in Cloud Computing Environments Based on Business Metrics", Conference on Parallel Programming and Applied Mathematics (PPAM'2011), 11-14 September 2011, Torun, Poland, LNCS, Springer, 2012 : NA, NA, 2011.
[6133211] Juve, G., and E. Deelman, "Automating Application Deployment in Infrastructure Clouds", Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, pp. 658 -665, 29 2011-dec. 1. Abstract
[fg-nsf-abstract] NSF, Award Abstract #091081 - FutureGrid: An Experimental, High-Performance Grid Test-bed, , 2009.
B
[Kwan:2013hy] Kwan, J. C., and E. W. Schmidt, "Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.", PloS One, vol. 8, no. 12, pp. e80822, 2013.
[fg-2588] Chen, W., R. F. da Silva, E. Deelman, and R. Sakellariou, "Balanced Task Clustering in Scientific Workflows", The 9th IEEE International Conference on e-Science (eScience 2013), to appear, Beijing, China, Oct 23-25, 2013, Submitted.  Download: balance.pdf (513.81 KB)
[fg-219] Fox, G., Big Data Virtual School for Computational Science and Engineering Presentation "FutureGrid 100 and FutureGrid 101 (Part 1)", , 07/2010.
[fg-220] Stewart, C., Big Data Virtual School for Computational Science and Engineering Presentation "FutureGrid 101 (Part 2) - Getting Started", , 07/2010.
[fg-2267] Younge, A. J., A. Wu, B. Rothrock, F. Xin, K. Pagel, R. Konz, and T. Gao, Bioinformatics and Cyberinfrastructure project - 1000 Genomes protein analysis, , 2011.
[fg-2820] Smith, W., and S. Smallen, "Building an Information System for a Distributed Testbed", the 2014 Annual ConferenceProceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment - XSEDE '14, Atlanta, GA, USANew York, New York, USA, ACM Press, pp. 1 - 8, 2014.
[fg-1978] Kim, J., S. Maddineni, and S. Jha, "Building Gateways for Life-Science Applications using the Dynamic Application Runtime Environment (DARE) Framework", The 2011 TeraGrid Conference: Extreme Digital Discovery, 2011.
[fg-2075] Thain, D., "Building Scalable Data Intensive Applications on the Cloud with Makeflow and WorkQueue", Science Cloud Summer School 2012, Bloomington, IN, Notre Dame, 07/2012.
C
[fg-222] Fortes, J., and et al, CCGrid 2010 Demo, description, , 05/2010.
[fg-1979] Kim, J., S. Maddineni, and S. Jha, "Characterizing Deep Sequencing Analytics using BFAST: Towards a Scalable Distributed Architecture for Next-Generation Sequencing Data", The Second International Workshop on Emerging Computational Methods for the Life Sciences, 06/2011.
[fg-624] Fox, G. C., Cloud Architecture for Earthquake Science , , 7th Aces International Workshop OTARU, 10/2010.
[fg-276-cloud] von Laszewski, G., Cloud Computing for K-12, , Purdue University, 10/2012.  Download: Cloud Computing for K-12-oct-5.pptx (48.07 MB)
[fg-642] Fox, G. C., Cloud Technologies and GeoScience Applications Including FutureGrid International Symposium on Geo-Computation and Analysis, , ISGA 2009 LIESMARS at Wuhan University , 12/2009.
[fg-2087] Wang, X. F., "Cloud Technology: Cloud Security: New Challenges and New Opportunities", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: cloud security - 3.pptx (2.32 MB)
[fg-2089] Younge, A. J., "Cloud Technology: GPU on Clouds", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: ajy-cloud-school-2012_0.pptx (2.96 MB)
[fg-2085] Figueiredo, R., "Cloud Technology: Virtual Private Clusters: Virtual Appliances and Networks in the Cloud", Science Cloud Summer School 2012, Bloomington, IN, University of Florida, 07/2012.  Download: cloud-summer-school12-figueiredo.ppt (1.41 MB)
[fg-639] Fox, G. C., Clouds and FutureGrid MSI-CIEC All Hands Meeting SDSC, , 01/2010.
[fg-1041] Fox, G., Clouds, Grids, Clusters and FutureGrid, , IUPUI Computer Science Department Seminar, 02/2011.
[fg-2721] Canonico, M., A. Lombado, and I. Lovotti, "CloudTUI: a multi Cloud platform Text User Interface", International conference on Perfomance Evaluation Methodologies and Tools, Turin, Italy, 12/2013.  Download: cloudtui.pdf (202.24 KB)
[fg-2538] Montes, J. D., M. Parashar, I. Rodero, J. Zola, B. Ganapathysubramanian, and Y. Xie, "CometCloud: Using a Federated HPC-Cloud to Understand Fluid Flow in Microchannels", HPC in the Cloud, no. May 2013, 2013.
[fg-2076] Kinney, J., "Commercial IaaS/PaaS I: AWS for Scientists", Science Cloud Summer School 2012, Bloomington, IN, Amazon Web Services, 07/2012.
[fg-2077] Gunarathne, T., "Commercial IaaS/PaaS II: Windows Azure and Twister4Azure", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2833] de Silva, R. F., W. Chen, G. Juve, K. vahi, and E. Deelman, "Community Resources for Enabling Research in Distributed Scientific Workflows", the 10th IEEE International Conference on eScience 2014 (eScience 2014), Guaruja, SP, Brazil, Oct 20-24, 2014.  Download: communityresources-weiweichen.pdf (421.05 KB)
[Marathe:2013:CSH:2493123.2462919] Marathe, A., R. Harris, D. K. Lowenthal, B. R. de Supinski, B. Rountree, M. Schulz, and X. Yuan, "A comparative study of high-performance computing on the cloud", Proceedings of the 22nd international symposium on High-performance parallel and distributed computing, New York, NY, USA, ACM, pp. 239–250, 2013.  Download: cloud-final.pdf (194.15 KB)
[fg-1933] von Laszewski, G., J. Diaz, F. Wang, and G. Fox, "Comparison of Multiple Cloud Frameworks", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: laszewski-IEEECloud2012_id-4803.pdf (603.3 KB)
[las12fg-bookchapter] Fox, G. C., G. von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, and A. Grimshaw, Contemporary HPC Architectures, , draft, 2012.
[fg-637] Hancock, D., Cray User Group, , 05/2010.
[ inria-00625203] Matsunaga, A., P. Riteau, M. Tsugawa, and J. Fortes, "Crosscloud Computing", High Performance Computing: From Grids and Clouds to Exascale, vol. 20: IOS Press, pp. 94-108, 2011. Abstract
[fg-2289] Bresnahan, J., K. Keahey, T. Freeman, and D. LaBissoniere, Cumulus, , 2010.
[fg-50] Bresnahan, J., K. Keahey, T. Freeman, and D. LaBissoniere, Cumulus: Open Source Storage Cloud for Science, , vol. Supercomputing 2010, Conference Poster, 11/2010.
[fg-2150] , Cygwin 1.7.16-1, , 2012.  Download: cygwin.zip (46.3 MB)
D
[ruan2012dacidr] Ruan, Y., S. Ekanayake, M. Rho, H. Tang, S. - H. Bae, J. Qiu, and G. Fox, "DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences", Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine: ACM, pp. 329–336, 2012.
[fg-2074] Qiu, J., "Data Mining with Iterative MapReduce: Twister & Twister4Azure", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2112] Qiu, J., and B. Zhang, Data Mining with Twister Iterative MapReduce, , Submitted.
[fg-2045] von Laszewski, G., H. Lee, J. Diaz, F. Wang, K. Tanaka, S. Karavinkoppa, G. C. Fox, and T. Furlani, "Design of a Dynamic Provisioning System for a Federated Cloud and Bare-metal Environment", Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, CA, IEEE, 09/2012.  Download: vonLaszewski-federated-cloud-07-14-2012.pdf (1.06 MB)
[fg-171] von Laszewski, G., G. C. Fox, F. Wang, A. J. Younge, A. Kulshrestha, G. G. Pike, W. Smith, J. Voeckler, R. J. Figueiredo, J. Fortes, et al., "Design of the FutureGrid Experiment Management Framework", GCE2010 at SC10, New Orleans, IEEE, 11/2010.
[fg-2231] Bates, A., B. Mood, J. Pletcher, H. Pruse, M. Valafar, and K. Butler, "Detecting Co-Residency with Active Traffic Analysis Techniques", ACM Cloud Computer Security Workshop, Raleigh, NC, ACM, 10/2012.
[fg-2288] Marshall, P., Differentiated Leases for Infrastructure-as-a-Service, , 2011.
[fg-2300] Altintas, I., and J. Wang, Distributed Execution of Kepler Scientific Workflow on Future Grid, , http://dev.mygrid.org.uk/wiki/display/scape/Relevant+Publications, 2010.
[fg-32] von Laszewski, G., DOE MAGIC Meeting, , 04/2010.
[fg-217] von Laszewski, G., G. C. Fox, and F. G. team, Dynamic Provisioned Experiments in FutureGrid, , 11/2010.
E
[fg-1197] Figueiredo, R., D. Wolinsky, and P. Chuchaisri, Educational Virtual Clusters for On-demand MPI/Hadoop/Condor in FutureGrid, , 07/2011.  Download: tg-2011.ppt (648 KB)
[fg-1196] Figueiredo, R. J., D. I. Wolinsky, and P. Chuchaisri, "Educational Virtual Clusters for On-demand MPI/Hadoop/Condor in FutureGrid [extended abstract]", TeraGrid Conference, Salt Lake City, Utah, 07/2011.  Download: tg11_extended_abstract_figueiredo.doc (41.5 KB)
[fg-1380] William, T., D. K. Berry, R. Henschel, M. Weber, D. Röhrig, and C. J. Horowitz, Electronic Poster: Performance Studies Of A Molecular Dynamics Code, , ePoster Presentation at SuperComputing conference 2011, 2011. Abstract  Download: ePost114-william-slides-4up.pdf (13.36 MB); ePost114-william-movie.zip (406.34 MB)
[Chen] Chen, D., L. Wang, S. Wang, M. Xiong, G. von Laszewski, and X. Li, "Enabling Energy-Efficient Analysis of Massive Neural Signals Using GPGPU", Proceedings of the 2010 IEEE/ACM Int'l Conference on Green Computing and Communications & Int'l Conference on Cyber, Physical and Social Computing, Washington, DC, USA, IEEE Computer Society, pp. 147–154, 2010.
[fg-1923] Bosin, A., M. Dessalvi, G. M. Mereu, and G. Serra, "Enhancing Eucalyptus Community Cloud", Intelligent Information Management, vol. 04, issue 03, pp. 52 - 59, 2012. Abstract
[fg-621] Fox, G. C., eScience: Grids, Clouds and Parallel Computing and Video, , 10/2010.
[fg-1935] von Laszewski, G., S. Islam, J. Diaz, and G. C. Fox, Eucalyptus on FutureGrid: A case for Eucalyptus 3, , New York City, NY, 05/2012.
[fg-1232] Luszczek, P., E. Meek, S. Moore, D. Terpstra, V. M. Weaver, and J. Dongarra, "Evaluation of the HPC Challenge Benchmarks in Virtualized Environments", VHPC 2011, 6th Workshop on Virtualization in High-Performance Cloud Computing, Bordeaux, France, 08/2011.  Download: Evaluartion of the HPC Challenge Benchmarks in Virtualized Environments.pdf (229.51 KB)
[fg-1057] Vöckler, J. - S., E. Deelman, M. Rynge, and G. B. Berriman, "Experiences Using Cloud Computing for a Scientific Workflow Application", Workshop on Scientific Cloud Computing (ScienceCloud) , 06/2011.
[Vockler:2011:EUC:1996109.1996114] Vöckler, J. - S., G. Juve, E. Deelman, M. Rynge, and B. Berriman, "Experiences using cloud computing for a scientific workflow application", Proceedings of the 2nd international workshop on Scientific cloud computing, New York, NY, USA, ACM, pp. 15–24, 2011.
[fg-2047] Wolinsky, D. I., P. Chuchaisri, K. Lee, and R. J. Figueiredo, "Experiences with self-organizing, decentralized grids using the grid appliance", Cluster Computing, 01/2012. Abstract
[Wolinsky:2011:ESD:1996130.1996156] Wolinsky, D. I., and R. Figueiredo, "Experiences with self-organizing, decentralized grids using the grid appliance", Proceedings of the 20th international symposium on High performance distributed computing, New York, NY, USA, ACM, pp. 183–194, 2011. Abstract
[fg-1352] Vöckler, J. - S., and E. Deelman, "Experiment Management from a Pegasus Perspective", Support for Experimental Computer Science Workshop in conjunction with SC11, Seatle, WA, 11/2011.  Download: SC-EM-PWMS.ppt (353 KB)
F
[fg-2636] Chen, W., and E. Deelman, "Fault Tolerant Clustering in Scientific Workflows", IEEE International Workshop on Scientific Workflows (SWF), in conjunction with 8th IEEE World Congress on Servicess, Honolulu, Hawaii, Jun 2012.  Download: ft-final.pdf (998.71 KB)
[fg-2082] Parashar, M., and M. AbdelBaky, "Federating HPC, Cyberinfrastructure and Clouds using CometCloud", Science Cloud Summer School 2012, Bloomington, IN, Rutgers University, 07/2012.  Download: 1.introduction.pdf (1.51 MB); 2.cometcloud.masterworker.pdf (960.79 KB); 3.hands_on.pdf (455.36 KB); 4.cometcloud.mapreduce.pdf (648.24 KB); comet.xml (1.05 KB); CometCloud developer guide.pdf (129.23 KB); CometCloud installation guide-matrixmultiplication.pdf (137.91 KB); CometCloud installation guide-sample.pdf (121.87 KB)
[fg-131] von Laszewski, G., Future Grid Software Architecture, , Bloomington, IN, Indiana University, 2009.
[fg-1060] von Laszewski, G., and F. Wang, FuturegGrid Software: Portal Development, , Bloomington, IN, Indiana University, 04/2011.
[fg-2034] Fox, G., G. von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, and A. Grimshaw, "FutureGrid - a reconfigurable testbed for Cloud, HPC, and Grid Computing", Contemporary High Performance Computing: From Petascale toward Exascale: Chapman & Hall, 04/2013.  Download: vonLaszewski-fg-bookchapter.pdf (1.6 MB)
[fg-641] Fox, G. C., FutureGrid and Applications, , Indiana University Innovation Center, 12/2009.
[fg-623] Fox, G. C., FutureGrid and Cyberinfrastructure Supporting Data Analysis, , Googleplex Mountain View, CA, 10/2010.
[fg-646] von Laszewski, G., FutureGrid and Green Aware Computing, , Northern Illinois University, 10/2009.
[fg-648] von Laszewski, G., FutureGrid and Green Aware Computing Keynote Address, , 3rd International Conference on Network & System Security (NSS 2009), 10/2009.
[fg-1320] William, T., Futuregrid at ZIH, , Supercomputing 2010, 11/2010.  Download: sc10-vampir.png (568.59 KB)
[fg-ccgrid2011-tutorial] von Laszewski, G., A. J. Younge, and P. Marshall, FutureGrid CCGrid2011 Tutorial, , Newport Beach, CA, IEEE, 05/2011.
[fg-643] Fox, G. C., FutureGrid Cloud Technologies and Bioinformatics Applications Keynote Speech, , First International Conference on Cloud Computing: Beijing Jiaotong University, 12/2009.
[fg-1051] von Laszewski, G., and others, FutureGrid Developers Manual, , 2011.
[fg-630] Wang, F., A. Kulshrestha, G. G. Pike, G. von Laszewski, and G. C. Fox, FutureGrid Dynamic Provisioning Experiments Including Hadoop Internal FutureGrid, , 08/2010.
[fg-633] Fox, G. C., FutureGrid Early Projects, , User Advisory Board at TG'10, 08/2010.
[fg-2441] Mitchell, J. E., G. Fox, R. Figueiredo, B. A. O'Leary, L. Hayden, S. Jha, M. Canonico, and J. Qiu, "FutureGrid education: Using case studies to develop a curriculum for communicating parallel and distributed computing concepts", XSEDE12, 07/2012.  Download: FutureGrid_Education_pdf.pdf (3.39 MB)
[fg-1295] Diaz, J., G. von Laszewski, F. Wang, A. J. Younge, and G. C. Fox, "FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images", Third IEEE International Conference on Coud Computing Technology and Science (CloudCom2011), Athens, Greece, IEEE, 12/2011.  Download: jdiazCloudCom2011.pdf (937.38 KB); ImageRepo_CloudCom2011.pptx (2.27 MB)
[fg-644] Fox, G. C., FutureGrid Overview, , AIST Booth at SDSC 2009: Portland, OR USA, 11/2009.
[fg-649] Fox, G. C., FutureGrid Overview, , Cloud Computing and its Applications (CCA-09) Workshop at the Marriott Medical Center: Chicago, IL USA, 10/2009.
[fg-1037] Fox, G., FutureGrid Overview, , The Science of Cloud Computing Workshop, Washington D.C., 03/2011.
[fg-1042] Fox, G., FutureGrid Overview, , Institute for Mathematics and its Applications (IMA) Annual Program Year, Workshop for High Performance Computing and Emerging Architectures, University of Minneapolis, 01/2011.
[fg-645] Fox, G. C., FutureGrid Overview Template, , 11/2009.
[fg-650] Ruan, Y., FutureGrid Poster, , 10/2009.
[fg-1038] Fox, G., FutureGrid Poster, , The Science of Cloud Computing Workshop, Washington D.C., 03/2011.
[fg-636] Fox, G. C., FutureGrid Presentation, , TeraGrid Science Advisory Board Meeting: San Diego, CA USA, 07/2010.
[fg-653] von Laszewski, G., FutureGrid Software Architecture, , FutureGrid All Hands Meeting at the IUPUI Conference Center: Indianapolis, IN USA, 10/2009.
[fg-1061] von Laszewski, G., and J. Diaz, FutureGrid Software: Image Repository REST API, , 2011.
[fg-631] Fox, G., FutureGrid Summary, , TG'10 TeraGrid Users Meeting, 08/2010.
[fg-tutorial-cloudcom-2010] von Laszewski, G., G. Pike, A. Kulshrestha, A. J. Younge, and F. Wang, "FutureGrid Tutorial", CloudCom 2010, Indianapolis, IEEE, 12/2010.
[fg-2583] von Laszewski, G., and G. C. Fox, FutureGrid UAB Meeting, , XSEDE13 San Diego, CA, 7/24/2013.  Download: FG-XSEDE13-July24-2013.pptx (2.09 MB)
[fg-1050] von Laszewski, G., and others, FutureGrid User Manual, , update, Web Page, 04/2011.
[fg-652] Pierce, M., FutureGrid User Portal, , FutureGrid All Hands Meeting at the IUPUI Conference Center: Indianapolis, IN USA, 10/2009.
[fg-1233] Sarnowska-Upton, K., FutureGrid: An Experimental Computing Grid and Cloud Test-Bed, , Vilnius, Lithuania, EGI User Forum 2011, 04/2011.  Download: EGI.UserForum2011.FutureGrid.v0.pptx (3.59 MB)