Metagenomics analysis of environmental samples
Project Information
- Discipline
- Microbiology, Immunology, and Virology (611)
- Subdiscipline
- 26.0603 Ecology
- Orientation
- Research
Analyze metagenomic and metatranscriptomics of environmental samples.
Intellectual MeritTo analyze metagenomic data using existing programs.
Broader ImpactsDetermine methods to process large sequencing data.
Project Contact
- Project Lead
- Devesh Shrestha (dshrestha)
- Project Manager
- Devesh Shrestha (dshrestha)
Resource Requirements
- Hardware Systems
-
- alamo (Dell optiplex at TACC)
- foxtrot (IBM iDataPlex at UF)
- hotel (IBM iDataPlex at U Chicago)
- india (IBM iDataPlex at IU)
- sierra (IBM iDataPlex at SDSC)
- xray (Cray XM5 at IU)
- bravo (large memory machine at IU)
- delta (GPU Cloud)
- Network Impairment Device
Analyze metagenomic data generated by Illumina technology.
Scale of UseRun computer intensive programs to analyze metagenomic data.
Project Timeline
- Submitted
- 07/10/2012 - 17:05