Improved next generation sequencing analytics
Project Information
- Discipline
- Genetics (610)
- Subdiscipline
- 51.1306 Medical Genetics
- Orientation
- Research
Development of next generation of computational algorithms for analyzing large-scale genomic data.
Intellectual MeritComputational algorithmic improvements and fundamental innovations in dealing with big data in medical genomics.
Broader ImpactsLong term goal would be to be able to deploy the improved algorithms in clinics.
Project Contact
- Project Lead
- Sarath Chandra Janga (scjanga)
- Project Manager
- Sarath Chandra Janga (scjanga)
- Project Members
- Seyedsasan Hashemikhabir
Resource Requirements
- Hardware Systems
-
- alamo (Dell optiplex at TACC)
- foxtrot (IBM iDataPlex at UF)
- hotel (IBM iDataPlex at U Chicago)
- india (IBM iDataPlex at IU)
- sierra (IBM iDataPlex at SDSC)
- xray (Cray XM5 at IU)
- bravo (large memory machine at IU)
- delta (GPU Cloud)
Develop improved algorithms in genomics domain.
Scale of UseResearch work in the lab. I want to run a set of comparisons on entire systems and for each I'll need about 10 days to do that.
Project Timeline
- Submitted
- 04/17/2014 - 14:44