Genomic Mapping

Project Information

Discipline
Biology (603) 
Orientation
Research 
Abstract

do some genomic mapping and simple bioinformatics analysis

Intellectual Merit

Could help analysis the RNA-seq data in Arabidopsis

Broader Impacts

Understanding the mechanism of transcription in general

Project Contact

Project Lead
Junzhou Wang (junzwang) 
Project Manager
Junzhou Wang (junzwang) 

Resource Requirements

Hardware Systems
  • alamo (Dell optiplex at TACC)
  • foxtrot (IBM iDataPlex at UF)
  • hotel (IBM iDataPlex at U Chicago)
  • india (IBM iDataPlex at IU)
  • sierra (IBM iDataPlex at SDSC)
  • xray (Cray XM5 at IU)
  • bravo (large memory machine at IU)
  • delta (GPU Cloud)
  • Network Impairment Device
 
Use of FutureGrid

help store of the huge amount of sequencing data and run some program to analysis the sequencing data

Scale of Use

I prefer a long term usage of the service because we are doing a lot of sequencing and I will need to have access to futuregrid for a long time

Project Timeline

Submitted
04/08/2012 - 16:25 
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