Improved next generation sequencing analytics

Project Information

Discipline
Genetics (610) 
Subdiscipline
51.1306 Medical Genetics 
Orientation
Research 
Abstract

Development of next generation of computational algorithms for analyzing large-scale genomic data.

Intellectual Merit

Computational algorithmic improvements and fundamental innovations in dealing with big data in medical genomics.

Broader Impacts

Long term goal would be to be able to deploy the improved algorithms in clinics.

Project Contact

Project Lead
Sarath Chandra Janga (scjanga) 
Project Manager
Sarath Chandra Janga (scjanga) 
Project Members
Seyedsasan Hashemikhabir  

Resource Requirements

Hardware Systems
  • alamo (Dell optiplex at TACC)
  • foxtrot (IBM iDataPlex at UF)
  • hotel (IBM iDataPlex at U Chicago)
  • india (IBM iDataPlex at IU)
  • sierra (IBM iDataPlex at SDSC)
  • xray (Cray XM5 at IU)
  • bravo (large memory machine at IU)
  • delta (GPU Cloud)
 
Use of FutureGrid

Develop improved algorithms in genomics domain.

Scale of Use

Research work in the lab. I want to run a set of comparisons on entire systems and for each I'll need about 10 days to do that.

Project Timeline

Submitted
04/17/2014 - 14:44 
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