Biblio
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[fg-2587] Keahey, K., D. Lifka, M. Parashar, W. Smith, C. Song, and S. Wang,
XSEDE BOF: Science Clouds or It Takes a Village to Give a Talk on Cloud Computing,
, 07/24/2013.
Download: xsede2013bof.pdf (9.84 MB)
[fg-1979] Kim, J., S. Maddineni, and S. Jha,
"Characterizing Deep Sequencing Analytics using BFAST: Towards a Scalable Distributed Architecture for Next-Generation Sequencing Data",
The Second International Workshop on Emerging Computational Methods for the Life Sciences, 06/2011.
[fg-1978] Kim, J., S. Maddineni, and S. Jha,
"Building Gateways for Life-Science Applications using the Dynamic Application Runtime Environment (DARE) Framework",
The 2011 TeraGrid Conference: Extreme Digital Discovery, 2011.
[fg-2076] Kinney, J.,
"Commercial IaaS/PaaS I: AWS for Scientists",
Science Cloud Summer School 2012, Bloomington, IN, Amazon Web Services, 07/2012.
[fg-2072] Klinginsmith, J.,
"Virtual Clusters Supporting MapReduce in Cloud",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2292] Klinginsmith, J., M. Mahoui, and Y. M. Wu,
"Towards Reproducible eScience in the Cloud",
Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, Athens, pp. 582-586, November, 2011.
Abstract
[fg-1316] Klinginsmith, J., M. Mahoui, and Y. M. Wu,
"Towards Reproducible eScience in the Cloud",
IEEE International Conference on Cloud Computing Technology and Science, 07/2011.
[fg-2102] Klinginsmith, J., and T. - L. Wu,
Virtualbox Appliance Installation Guide,
, 2012.
[fg-1361] Klinginsmith, J., M. Mahoui, and Y. M. Wu,
"Towards Reproducible eScience in the Cloud",
CloudCom2011, Athens, Greece, IEEE, 12/2011.
[fg-622] Knepper, R.,
FutureGrid: Cyberinfrastructure for Computational Research,
, TeraGrid Campus Champtions Meeting, 10/2010.
[Kwan:2013hy] Kwan, J. C., and E. W. Schmidt,
"Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.",
PloS One, vol. 8, no. 12, pp. e80822, 2013.
[fg-2392] Kwan, J. C., M. S. Donia, A. W. Han, E. Hirose, M. G. Haygood, and E. W. Schmidt,
"Genome streamlining and chemical defense in a coral reef symbiosis",
Proceedings of the National Academy of Sciences, 2012.
L
[10.1371/journal.pcbi.1002950] Larsson, P., and P. M. Kasson,
"Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models",
PLoS Comput Biol, vol. 9, no. 3: Public Library of Science, pp. e1002950, 03, 2013.
Abstract
Download: journal.pcbi_.1002950.pdf (1022.66 KB)
[fg-171] von Laszewski, G., G. C. Fox, F. Wang, A. J. Younge, A. Kulshrestha, G. G. Pike, W. Smith, J. Voeckler, R. J. Figueiredo, J. Fortes, et al.,
"Design of the FutureGrid Experiment Management Framework",
GCE2010 at SC10, New Orleans, IEEE, 11/2010.
[fg-1013] von Laszewski, G., L. Wang, F. Wang, G. C. Fox, and G. K. Mahinthakumar,
"Threat Detection in Urban Water Distribution Systems with Simulations Conducted in Grids and Clouds",
The Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, Ajaccio - Corsica - France, Civil-Comp Press, 04/2011.
[fg-ccgrid2011-tutorial] von Laszewski, G., A. J. Younge, and P. Marshall,
FutureGrid CCGrid2011 Tutorial,
, Newport Beach, CA, IEEE, 05/2011.
[fg-1280] von Laszewski, G., J. Diaz, F. Wang, G. Fox, and A. J. Younge,
RAIN: A system to Dynamically Generate & Provision Images on Bare Metal by Application Users,
: ISC Cloud'11, Mannheim, Germany, 09/2011.
[fg-653] von Laszewski, G.,
FutureGrid Software Architecture,
, FutureGrid All Hands Meeting at the IUPUI Conference Center: Indianapolis, IN USA, 10/2009.
[fg-1058] von Laszewski, G., A. J. Younge, A. Kulshrestha, F. Wang, and G. C. Fox,
Rain: Dynamically Provisioning Clouds within FutureGrid,
, A slightly modified version was presented as poster at SC10 and CloudCom10, 2010.
[fg-1050] von Laszewski, G., and others,
FutureGrid User Manual,
, update, Web Page, 04/2011.
[fg-2063] von Laszewski, G., J. Bresnahan, and F. Wang,
"Signing up for a FutureGrid Account",
Science Cloud Summer School 2012, vol. 2012, no. 07/2012, Bloomington, FutureGrid Portal, 2012.
[fg-2079] von Laszewski, G., and J. Diaz,
"IaaS in Action II: Eucalyptus OpenStack",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
Download: OpenStackTutorial_slides.ppt (2.1 MB)
[fg-tutorial-cloudcom-2010] von Laszewski, G., G. Pike, A. Kulshrestha, A. J. Younge, and F. Wang,
"FutureGrid Tutorial",
CloudCom 2010, Indianapolis, IEEE, 12/2010.
[fg-1155] von Laszewski, G., J. Diaz, F. Wang, A. J. Younge, A. Kulshrestha, and G. Fox,
"Towards Generic FutureGrid Image Management",
TG11: ACM, 07/2011.
Download: TG11-image-repo-overview.docx (178.83 KB); fg-repo-generator-TG11.pptx (1.76 MB)
[fg-1060] von Laszewski, G., and F. Wang,
FuturegGrid Software: Portal Development,
, Bloomington, IN, Indiana University, 04/2011.
[fg-1280] von Laszewski, G., J. Diaz, F. Wang, G. Fox, and A. J. Younge,
RAIN: A system to Dynamically Generate & Provision Images on Bare Metal by Application Users,
: ISC Cloud’11, Mannheim, Germany, 09/2011.
[fg-1935] von Laszewski, G., S. Islam, J. Diaz, and G. C. Fox,
Eucalyptus on FutureGrid: A case for Eucalyptus 3,
, New York City, NY, 05/2012.
[fg-2080] von Laszewski, G., and J. Diaz,
"IaaS in Action II: RAIN Dynamic Provisioning on Bare Metal and IaaS",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
Download: RainTutorial_slides.ppt (4.35 MB)
[fg-648] von Laszewski, G.,
FutureGrid and Green Aware Computing Keynote Address,
, 3rd International Conference on Network & System Security (NSS 2009), 10/2009.
[fg-2045] von Laszewski, G., H. Lee, J. Diaz, F. Wang, K. Tanaka, S. Karavinkoppa, G. C. Fox, and T. Furlani,
"Design of a Dynamic Provisioning System for a Federated Cloud and Bare-metal Environment",
Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, CA, IEEE, 09/2012.
Download: vonLaszewski-federated-cloud-07-14-2012.pdf (1.06 MB)
[fg-1051] von Laszewski, G., and others,
FutureGrid Developers Manual,
, 2011.
[fg-276-cloud] von Laszewski, G.,
Cloud Computing for K-12,
, Purdue University, 10/2012.
Download: Cloud Computing for K-12-oct-5.pptx (48.07 MB)
[fg-2583] von Laszewski, G., and G. C. Fox,
FutureGrid UAB Meeting,
, XSEDE13 San Diego, CA, 7/24/2013.
Download: FG-XSEDE13-July24-2013.pptx (2.09 MB)
[fg-131] von Laszewski, G.,
Future Grid Software Architecture,
, Bloomington, IN, Indiana University, 2009.
[fg-1061] von Laszewski, G., and J. Diaz,
FutureGrid Software: Image Repository REST API,
, 2011.
[fg-1936] von Laszewski, G., S. Crago, K. Keahey, T. Omtzigt, and B. Renski,
OpenStack Conference: Panel on Cloud and HPC,
, San Francisco, 05/2012.
[fg-2081] von Laszewski, G., and J. Diaz,
"IaaS in Action II: fg-move: Moving Resources Between Federated Clouds and Bare Metal",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
Download: MoveTutorial_slides.pptx (2.52 MB)
[fg-1269] von Laszewski, G., F. Wang, and M. Hanlon,
Sumary: Status of the FG Portal,
, 09/2011.
[fg-1339] von Laszewski, G., E. Damiani, S. Diamond, A. M. Goscinski, and D. S. Milojicic,
Panel: Opportunities of Services Business in Cloud Age ,
, Cloud2011, 7/2011.
[fg-1933] von Laszewski, G., J. Diaz, F. Wang, and G. Fox,
"Comparison of Multiple Cloud Frameworks",
IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.
Download: laszewski-IEEECloud2012_id-4803.pdf (603.3 KB)
[fg-217] von Laszewski, G., G. C. Fox, and F. G. team,
Dynamic Provisioned Experiments in FutureGrid,
, 11/2010.
[fg-646] von Laszewski, G.,
FutureGrid and Green Aware Computing,
, Northern Illinois University, 10/2009.
[fg-1909] Lee, K., D. I. Wolinsky, and R. Figueiredo,
"PonD : Dynamic Creation of HTC Pool on Demand Using a Decentralized Resource Discovery System",
Proceedings of the 21st international symposium on High Performance Distributed Computing (HPDC), Delft, the Netherlands, ACM, 06/2012.
[fg-2217] Lee, K., and R. J. Figueiredo,
"MapReduce on Opportunistic Resources Leveraging Resource Availability",
IEEE CloudCom 2012, Taipei, Taiwan, 12/2012.
[fg-2208] Lee, K., T. Choi, P. O. Boykin, and R. J. Figueiredo,
"MatchTree: Flexible, Scalable, and Fault-tolerant Wide-area Resource Discovery with Distributed Matchmaking and Aggregation",
Future Generation Computer Systems, vol. to be published , issue to be published , to be published , 2012.
[fg-2133] Li, H., and J. Qiu,
"Hands on Tutorial: Pig ",
Virtual Cloud Summer School 2012, Bloomington, IN, 07/2012.
[fg-2101] Li, H., and J. Qiu,
"High Level Language: Pig Latin",
Virtual Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2801] Lin, Z., M. M. Zachariah, L. Marett, R. W. Hughen, R. W. Teichert, G. P. Concepcion, M. G. Haygood, B. M. Olivera, A. R. Light, and E. W. Schmidt,
"Griseorhodins D–F, Neuroactive Intermediates and End Products of Post-PKS Tailoring Modification in Griseorhodin Biosynthesis",
Journal of Natural Products, vol. 77, issue 5, pp. 1224 - 1230, 05/2014.
[map-reduce-gordon] Lockwood, G. K.,
Running Hadoop Clusters on Gordon,
, SDSC, 2014.
[Loffler:2011:UTT:2016741.2016800] Löffler, F., G. Allen, W. Benger, A. Hutanu, S. Jha, and E. Schnetter,
"Using the TeraGrid to teach scientific computing",
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, New York, NY, USA, ACM, pp. 55:1–55:7, 2011.
Abstract
[Loffler:2011:UTT:2016741.2016800] Löffler, F., G. Allen, W. Benger, A. Hutanu, S. Jha, and E. Schnetter,
"Using the TeraGrid to teach scientific computing",
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, New York, NY, USA, ACM, pp. 55:1–55:7, 07/2011.
[fg-1976] Luckow, A., L. Lacinski, and S. Jha,
"SAGA BigJob: An Extensible and Interoperable Pilot-Job Abstraction for Distributed Applications and Systems",
10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2010.
[fg-1977] Luckow, A., and S. Jha,
"Abstractions for Loosely-Coupled and Ensemble-Based Simulations on Azure",
IEEE International Conference on Cloud Computing Technology and Science, 2010.
[fg-1232] Luszczek, P., E. Meek, S. Moore, D. Terpstra, V. M. Weaver, and J. Dongarra,
"Evaluation of the HPC Challenge Benchmarks in Virtualized Environments",
VHPC 2011, 6th Workshop on Virtualization in High-Performance Cloud Computing, Bordeaux, France, 08/2011.
Download: Evaluartion of the HPC Challenge Benchmarks in Virtualized Environments.pdf (229.51 KB)
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[Marathe:2013:CSH:2493123.2462919] Marathe, A., R. Harris, D. K. Lowenthal, B. R. de Supinski, B. Rountree, M. Schulz, and X. Yuan,
"A comparative study of high-performance computing on the cloud",
Proceedings of the 22nd international symposium on High-performance parallel and distributed computing, New York, NY, USA, ACM, pp. 239–250, 2013.
Download: cloud-final.pdf (194.15 KB)
[fg-2288] Marshall, P.,
Differentiated Leases for Infrastructure-as-a-Service,
, 2011.
[fg-2207] Matsunaga, A., M. Tsugawa, and J. Fortes,
Scaling-out CloudBLAST: Combining Technologies to BLAST on the Sky,
, The Third IEEE International Scalable Computing Challenge (SCALE 2010), Melbourne, Australia, 2010.
Abstract
[fg-2104] Mitchell, J.,
"Good Ole Hadoop! How We Love Thee!",
Virtual Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
Download: good_ole_hadoop.pptx (49.59 MB)
[fg-2441] Mitchell, J. E., G. Fox, R. Figueiredo, B. A. O'Leary, L. Hayden, S. Jha, M. Canonico, and J. Qiu,
"FutureGrid education: Using case studies to develop a curriculum for communicating parallel and distributed computing concepts",
XSEDE12, 07/2012.
Download: FutureGrid_Education_pdf.pdf (3.39 MB)
[fg-2538] Montes, J. D., M. Parashar, I. Rodero, J. Zola, B. Ganapathysubramanian, and Y. Xie,
"CometCloud: Using a Federated HPC-Cloud to Understand Fluid Flow in Microchannels",
HPC in the Cloud, no. May 2013, 2013.
N
[fg-2305] Naab, J.,
"Overview of FutureGrid An Experimental Grid Cloud and HPC Test Bed",
Overview-of-FutureGrid-An-Experimental-Grid-Cloud-and-HPC-Test-Bed, 2011.
[fg-2736] Nelson, J.,
"Analyzing PAPI Performance on Virtual Machines",
VMware Technical Journal, vol. Winter 2013, 2013.
[fg-nsf-abstract] NSF,
Award Abstract #091081 - FutureGrid: An Experimental, High-Performance Grid Test-bed,
, 2009.
P
[fg-2082] Parashar, M., and M. AbdelBaky,
"Federating HPC, Cyberinfrastructure and Clouds using CometCloud",
Science Cloud Summer School 2012, Bloomington, IN, Rutgers University, 07/2012.
Download: 1.introduction.pdf (1.51 MB); 2.cometcloud.masterworker.pdf (960.79 KB); 3.hands_on.pdf (455.36 KB); 4.cometcloud.mapreduce.pdf (648.24 KB); comet.xml (1.05 KB); CometCloud developer guide.pdf (129.23 KB); CometCloud installation guide-matrixmultiplication.pdf (137.91 KB); CometCloud installation guide-sample.pdf (121.87 KB)
[fg-1916] Peluso, S., P. Ruivo, P. Romano, F. Quaglia, and L. Rodrigues,
"When Scalability Meets Consistency: Genuine Multiversion Update-Serializable Partial Data Replication",
The 32nd International Conference on Distributed Computing Systems, Macau, China, IEEE, 06/2012.
[fg-652] Pierce, M.,
FutureGrid User Portal,
, FutureGrid All Hands Meeting at the IUPUI Conference Center: Indianapolis, IN USA, 10/2009.
[fg-1291] Pike, G.,
Summary: Systems Software Deployments,
, 09/2011.
Download: Software-20110922 (2).pptx (45.75 KB)
[fg-2762] Prathibha, S.,
"Monitoring the Performance Analysis Of Executing Workflow applications with different resource types in a cloud environment,",
1st International Symposium on Big Data and Cloud Computing Challenges(ISBCC-2014), VIT University, Chennai, India, March 27-28,2013.
Download: soma.pdf (408.18 KB)
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[fg-634] Qiu, J.,
SALSA Laboratory Work on FutureGrid,
, User Advisory Board at TG'10, 08/2010.
[fg-2112] Qiu, J., and B. Zhang,
Data Mining with Twister Iterative MapReduce,
, Submitted.
[fg-626] Qiu, J.,
Scalable Programming and Algorithms for Data Intensive Life Science Applications,
, NSF Data-Intensive Sciences Workshop: Seattle, WA, 09/2010.
[fg-2074] Qiu, J.,
"Data Mining with Iterative MapReduce: Twister & Twister4Azure",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
R
[fg-2083] Ramakrishnan, L.,
"Magellan: Evaluating Cloud Computing for Science",
Science Cloud Summer School 2012, Bloomington, IN, Lawrence Berkeley National Laboratory, 07/2012.
Download: Magellan.pdf (4.74 MB)
[fg-759] Riley, D.,
"IU Wins $10M National Science Foundation Grant ",
WIBC, Indianapolis, 09/10/2009.
[fg-123] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, and K. Keahey,
"Large-Scale Cloud Computing Research: Sky Computing on FutureGrid and Grid’5000",
ERCIM News, 83, 2010.
[fg-632] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey,
Sky Computing on FutureGrid and Grid'5000 Poster,
, TG'10 TeraGrid Users Meeting, 08/2010.
[fg-127] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey,
Sky Computing on FutureGrid and Grid’5000,
, vol. TeraGrid 2010, Conference Poster, 2010.
[ruan2012dacidr] Ruan, Y., S. Ekanayake, M. Rho, H. Tang, S. - H. Bae, J. Qiu, and G. Fox,
"DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences",
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine: ACM, pp. 329–336, 2012.
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[fg-2695] S, S., and A. Basu,
"Performance of Eucalyptus and OpenStack Clouds on FutureGrid",
International Journal of Computer Applications, vol. 80, issue 13, pp. 31 - 37, 10/2013.
[fg-1233] Sarnowska-Upton, K.,
FutureGrid: An Experimental Computing Grid and Cloud Test-Bed,
, Vilnius, Lithuania, EGI User Forum 2011, 04/2011.
Download: EGI.UserForum2011.FutureGrid.v0.pptx (3.59 MB)
[fg-2065] Schatz, M.,
"Application: Biology on the Cloud",
Science Cloud Summer School 2012, Bloomington, IN, Cold Spring Harbor, 07/2012.
[fg-1975] Sehgal, S., M. Erdelyi, A. Merzky, and S. Jha,
"Understanding application-level interoperability: Scaling-out MapReduce over high-performance grids and clouds",
Future Generation Computer Systems, vol. 27, issue 5, 2011.
[fg-2833] de Silva, R. F., W. Chen, G. Juve, K. vahi, and E. Deelman,
"Community Resources for Enabling Research in Distributed Scientific Workflows",
the 10th IEEE International Conference on eScience 2014 (eScience 2014), Guaruja, SP, Brazil, Oct 20-24, 2014.
Download: communityresources-weiweichen.pdf (421.05 KB)
[fg-1914] Simmhan, Y.,
Adaptive Energy Forecasting and Information Diffusion for Smart Power Grids,
, IEEE SCALE Challenge, 2012.
[fg-1288] Smallen, S., P. Luszczek, and T. William,
Summary: Status of Monitoring and Information Services and Performance Tools,
, 09/2011.
[fg-124] Smallen, S.,
Monitoring User-level Functionality and Performance Using Inca,
, vol. CloudCom 2010, Conference Poster, 2010.
[10] Smith, E. D.,
"IU gets $10.1M grant to develop supercomputer network",
The Indianapolis Star, Indianapolis, IN, 09/10/2009.
[fg-2088] Stanzione, D.,
"Applications of Cloud: The iPlant Collaborative: Science in the Cloud for Plant Biology",
Science Cloud Summer School 2012, Bloomington, IN, TACC, 07/2012.
Download: VSCSE_iPlant_Stanzione_Aug_2012.pdf (14.55 MB)
[fg-2086] Stevens, R.,
"Applications of Cloud: DOE Systems Biology Knowledgebase",
Science Cloud Summer School 2012, Bloomington, IN, Argonne and University of Chicago, 07/2012.
Download: Summer-School-2012.ppt (42.12 MB)
[fg-647] Stewart, C.,
FutureGrid: An Experimental, High-Performance Grid Testbed,
, National Center for Supercomputing Applications at Urbana-Champaign, IL USA, 10/2009.
[fg-638] Stewart, C.,
FutureGrid: An Experimental, High-Performance Grid Testbed,
, 03/2010.
[fg-2078] Swany, M.,
"Networking and Clouds",
Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
Download: cloud-network-swany.pdf (393.51 KB)
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