Biblio

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Presentation
[fg-625] Fox, G. C., M. Pierce, J. Wang, Y. Ma, J. Ji, and X. Gao, QuakeSim Science Gateway: ACES Update, , 7th Aces International Workshop OTARU, 10/2010.
[fg-1280] von Laszewski, G., J. Diaz, F. Wang, G. Fox, and A. J. Younge, RAIN: A system to Dynamically Generate & Provision Images on Bare Metal by Application Users, : ISC Cloud'11, Mannheim, Germany, 09/2011.
[fg-2584] Fox, G., Remarks on MOOC's: Open Grid Forum BOF, , XSEDE13, San Diego, CA, 7/24/2013.  Download: OGFMOOC-July24-2013.pptx (4.4 MB)
[fg-629] Fox, G. C., Research in Grids and Clouds and FutureGrid, , Melbourne University Seminar, 09/2010.
[fg-2071] Chandra, A., "Running MapReduce in Non-Traditional Environments", Science Cloud Summer School 2012, Bloomington, IN, University of Minnesota, 07/2012.  Download: 
[fg-634] Qiu, J., SALSA Laboratory Work on FutureGrid, , User Advisory Board at TG'10, 08/2010.
[fg-626] Qiu, J., Scalable Programming and Algorithms for Data Intensive Life Science Applications, , NSF Data-Intensive Sciences Workshop: Seattle, WA, 09/2010.
[fg-2084] Juve, G., "Scientific Workflows in the Cloud", Science Cloud Summer School 2012, Bloomington, IN, USC, 07/2012.  Download: juve_cloud_summer_school.ppt (4.78 MB)
[fg-2537] Figueiredo, R., "Self-organizing Virtual Private Networks and Applications", , Delft, The Netherlands, February 2013.
[fg-628] Fox, G. C., Services, Security, and Privacy in Cloud Computing Panel , , IEEE HPCC-10 International Conference on High Performance Computing and Communications: Melbourne, AUS, 09/2010.
[fg-2063] von Laszewski, G., J. Bresnahan, and F. Wang, "Signing up for a FutureGrid Account", Science Cloud Summer School 2012, vol. 2012, no. 07/2012, Bloomington, FutureGrid Portal, 2012.
[fg-632] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey, Sky Computing on FutureGrid and Grid'5000 Poster, , TG'10 TeraGrid Users Meeting, 08/2010.
[fg-1039] Fox, G., SOIC Lightning, , Indiana University School of Informatics and Computing , 02/2011.
[fg-640] Hancock, D., SPXXL (IBM Large User Group), , 01/2010.
[fg-1269] von Laszewski, G., F. Wang, and M. Hanlon, Sumary: Status of the FG Portal, , 09/2011.
[fg-1288] Smallen, S., P. Luszczek, and T. William, Summary: Status of Monitoring and Information Services and Performance Tools, , 09/2011.
[fg-1273] Vöckler, J. - S., and E. Deelman, Summary: Pegasus in FutureGrid and Experiment Management, , 09/2011.  Download: fg-pegasus-20110922.pptx (1.68 MB)
[fg-1270] Diaz, J., G. von Laszewski, F. Wang, and A. J. Younge, Summary: Status of Image Management in FG, , 09/2011.
[fg-1271] Bresnahan, J., and K. Keheay, Summary: Status of the FG Nimbus Deployments, , 09/2011.
[fg-1272] Diaz, J., Summary: Status of the FG OpenNebula Deployment, , 09/2011.
[fg-1291] Pike, G., Summary: Systems Software Deployments, , 09/2011.  Download: Software-20110922 (2).pptx (45.75 KB)
[fg-218] Figueiredo, R., and et al, TeraGrid 2010 Presentation on Virtual Appliances, , 08/2010.
[fg-216] Stewart, C., TeraGrid Meeting, , 03/2010.
[fg-2129] Wu, T. - L., "Tutorial: Reproducible Environment for Scientific Applications", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2105] , twister resource donwload link, , Submitted.
[fg-224] , Vampir Workshop at IU, , 04/2010.
[fg-1159] Vöckler, J., G. Juve, E. Deelman, and B. G. Berriman, A Very Brief Introduction To Cloud Computing, , 06/2011. Abstract  Download: grits-caltech-talk.ppt (1.19 MB)
[fg-2072] Klinginsmith, J., "Virtual Clusters Supporting MapReduce in Cloud", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-1290] Tsugawa, M., R. Figueiredo, and J. Fortes, Virtual Networks on FutureGrid, , 09/22/2011.  Download: sw-review-2011-vine.ppt (2.24 MB)
[fg-2587] Keahey, K., D. Lifka, M. Parashar, W. Smith, C. Song, and S. Wang, XSEDE BOF: Science Clouds or It Takes a Village to Give a Talk on Cloud Computing, , 07/24/2013.  Download: xsede2013bof.pdf (9.84 MB)
Newspaper Article
[10] Smith, E. D., "IU gets $10.1M grant to develop supercomputer network", The Indianapolis Star, Indianapolis, IN, 09/10/2009.
[fg-132] , IU to lead nationwide research network to expand supercomputer capabilities, , no. 09/10/2009, Bloomington, IN, 2009.
[9] , "IU to lead project linking research supercomputers", Chicago Tribune, 09/10/2009.
[fg-759] Riley, D., "IU Wins $10M National Science Foundation Grant ", WIBC, Indianapolis, 09/10/2009.
[fg-123] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, and K. Keahey, "Large-Scale Cloud Computing Research: Sky Computing on FutureGrid and Grid’5000", ERCIM News, 83, 2010.
[fg-126] Boon, M., "Reaching for sky computing", iSGTW, 10, vol. 2010, 2010.
[fg-185] Bright Computing, I., "TACC Selects Bright Cluster Manager for FutureGrid Project", HPCwire, 12/2010.
Miscellaneous
[fg-1914] Simmhan, Y., Adaptive Energy Forecasting and Information Diffusion for Smart Power Grids, , IEEE SCALE Challenge, 2012.
[fg-2044] , Agenda for the Science Cloud Summer School 2012, , Bloomington, IN, 2012.
[fg-nsf-abstract] NSF, Award Abstract #091081 - FutureGrid: An Experimental, High-Performance Grid Test-bed, , 2009.
[fg-2267] Younge, A. J., A. Wu, B. Rothrock, F. Xin, K. Pagel, R. Konz, and T. Gao, Bioinformatics and Cyberinfrastructure project - 1000 Genomes protein analysis, , 2011.
[fg-50] Bresnahan, J., K. Keahey, T. Freeman, and D. LaBissoniere, Cumulus: Open Source Storage Cloud for Science, , vol. Supercomputing 2010, Conference Poster, 11/2010.
[fg-2300] Altintas, I., and J. Wang, Distributed Execution of Kepler Scientific Workflow on Future Grid, , http://dev.mygrid.org.uk/wiki/display/scape/Relevant+Publications, 2010.
[fg-1380] William, T., D. K. Berry, R. Henschel, M. Weber, D. Röhrig, and C. J. Horowitz, Electronic Poster: Performance Studies Of A Molecular Dynamics Code, , ePoster Presentation at SuperComputing conference 2011, 2011. Abstract  Download: ePost114-william-slides-4up.pdf (13.36 MB); ePost114-william-movie.zip (406.34 MB)
[fg-1051] von Laszewski, G., and others, FutureGrid Developers Manual, , 2011.
[fg-1061] von Laszewski, G., and J. Diaz, FutureGrid Software: Image Repository REST API, , 2011.
[fg-1050] von Laszewski, G., and others, FutureGrid User Manual, , update, Web Page, 04/2011.
[fg-1048] Diaz, J., G. von Laszewski, F. Wang, A. J. Younge, and G. Fox, Generic FutureGrid Image Management, , 2011.
[fg-2304] Chuchaisri, P., D. Wolinsky, and R. Figueiredo, Grid Appliances, , 2011.
[fg-124] Smallen, S., Monitoring User-level Functionality and Performance Using Inca, , vol. CloudCom 2010, Conference Poster, 2010.
[fg-120] Freeman, T., D. LaBissoniere, P. Marshall, J. Bresnahan, and K. Keahey, Nimbus Elastic Scaling in the Clouds, , vol. CloudCom 2010, Conference Poster, 12/2010.
[fg-125] Younge, A. J., J. Brown, R. Henschel, J. Qiu, and G. Fox, Performance Analysis of HPC Virtualization Technologies within FutureGrid, , vol. CloudCom 2010, Conference Poster, 2010.
[fg-2049] , Public Forum for the Summer School 2012, , 2012.
[fg-51] Fox, G. C., W. Smith, A. Grimshaw, J. Fortes, K. Keahey, and G. von Laszewski, Rain: Dynamically Provisioning Clouds within FutureGrid, , vol. Supercomputing 2010, Conference Poster, New Orleans, LA, IEEE, 11/2010.
[fg-1058] von Laszewski, G., A. J. Younge, A. Kulshrestha, F. Wang, and G. C. Fox, Rain: Dynamically Provisioning Clouds within FutureGrid, , A slightly modified version was presented as poster at SC10 and CloudCom10, 2010.
[map-reduce-gordon] Lockwood, G. K., Running Hadoop Clusters on Gordon, , SDSC, 2014.
[fg-2207] Matsunaga, A., M. Tsugawa, and J. Fortes, Scaling-out CloudBLAST: Combining Technologies to BLAST on the Sky, , The Third IEEE International Scalable Computing Challenge (SCALE 2010), Melbourne, Australia, 2010. Abstract
[fg-127] Riteau, P., M. Tsugawa, A. Matsunaga, J. Fortes, T. Freeman, D. LaBissoniere, and K. Keahey, Sky Computing on FutureGrid and Grid’5000, , vol. TeraGrid 2010, Conference Poster, 2010.
Journal Article
[fg-2736] Nelson, J., "Analyzing PAPI Performance on Virtual Machines", VMware Technical Journal, vol. Winter 2013, 2013.
[Kwan:2013hy] Kwan, J. C., and E. W. Schmidt, "Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.", PloS One, vol. 8, no. 12, pp. e80822, 2013.
[fg-1923] Bosin, A., M. Dessalvi, G. M. Mereu, and G. Serra, "Enhancing Eucalyptus Community Cloud", Intelligent Information Management, vol. 04, issue 03, pp. 52 - 59, 2012. Abstract
[fg-2047] Wolinsky, D. I., P. Chuchaisri, K. Lee, and R. J. Figueiredo, "Experiences with self-organizing, decentralized grids using the grid appliance", Cluster Computing, 01/2012. Abstract
[fg-2392] Kwan, J. C., M. S. Donia, A. W. Han, E. Hirose, M. G. Haygood, and E. W. Schmidt, "Genome streamlining and chemical defense in a coral reef symbiosis", Proceedings of the National Academy of Sciences, 2012.
[fg-2801] Lin, Z., M. M. Zachariah, L. Marett, R. W. Hughen, R. W. Teichert, G. P. Concepcion, M. G. Haygood, B. M. Olivera, A. R. Light, and E. W. Schmidt, "Griseorhodins D–F, Neuroactive Intermediates and End Products of Post-PKS Tailoring Modification in Griseorhodin Biosynthesis", Journal of Natural Products, vol. 77, issue 5, pp. 1224 - 1230, 05/2014.
[10.1371/journal.pcbi.1002950] Larsson, P., and P. M. Kasson, "Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models", PLoS Comput Biol, vol. 9, no. 3: Public Library of Science, pp. e1002950, 03, 2013. Abstract  Download: journal.pcbi_.1002950.pdf (1022.66 KB)
[fg-2719] Cunha, L., R. Montiel, M. Novo, P. Orozco-terWengel, A. Rodrigues, A. J. Morgan, and P. Kille, "Living on a volcano’s edge: genetic isolation of an extremophile terrestrial metazoan", Heredtiy, 09/2013.
[5719579] Chen, D., L. Wang, G. Ouyang, and X. Li, "Massively Parallel Neural Signal Processing on a Many-Core Platform", Computing in Science Engineering, vol. 13, no. 6, pp. 42 -51, nov.-dec., 2011.
[fg-2208] Lee, K., T. Choi, P. O. Boykin, and R. J. Figueiredo, "MatchTree: Flexible, Scalable, and Fault-tolerant Wide-area Resource Discovery with Distributed Matchmaking and Aggregation", Future Generation Computer Systems, vol. to be published , issue to be published , to be published , 2012.
[fg-1934] Furlani, T. R., M. D. Jones, S. M. Gallo, A. E. Bruno, C. - D. Lu, A. Ghadersohi, R. J. Gentner, A. Patra, R. L. DeLeon, G. von Laszewski, et al., "Performance metrics and auditing framework using application kernels for high performance computer systems", Concurrency Experience and Practice, issue to be published, 05/2012. Abstract
[fg-2695] S, S., and A. Basu, "Performance of Eucalyptus and OpenStack Clouds on FutureGrid", International Journal of Computer Applications, vol. 80, issue 13, pp. 31 - 37, 10/2013.
[DBLP:journals/procedia/AllenBHJLS11] Allen, G., W. Benger, A. Hutanu, S. Jha, F. Löffler, and E. Schnetter, "A practical and comprehensive graduate course preparing students for research involving scientific computing", Procedia CS, vol. 4, pp. 1927-1936, 2011.
[Allen20111927] Allen, G., W. Benger, A. Hutanu, S. Jha, F. Löffler, and E. Schnetter, "A practical and comprehensive graduate course preparing students for research involving scientific computing", Procedia Computer Science, vol. 4, pp. 1927 - 1936, 2011. Abstract
[fg-1280] von Laszewski, G., J. Diaz, F. Wang, G. Fox, and A. J. Younge, RAIN: A system to Dynamically Generate & Provision Images on Bare Metal by Application Users, : ISC Cloud’11, Mannheim, Germany, 09/2011.
[fg-2550] Tilak, S., "Real-World Deployments of Participatory Sensing Applications: Current Trends and Future Directions", ISRN Sensor Networks, vol. 2013, March 17, 2013. Abstract  Download: 583165.pdf (1.58 MB)
[fg-2603] Bosin, A., "Resource Provisioning for e-Science Environments", International Journal of Grid and High Performance Computing, vol. 5, issue 1: IGI Global, pp. 1 - 24, 31/2013. Abstract
[fg-2526] Fox, G., "Robust Scalable Visualized Clustering in Vector and non Vector Semimetric Spaces", Parallel Processing Letters, May 17, 2013.
[fg-2307] Bosin, A., "A SOA-based model for the integrated provisioning of cloud and grid resources", Advances in Software Engineering, vol. 2013, 2013. Abstract
[fg-1975] Sehgal, S., M. Erdelyi, A. Merzky, and S. Jha, "Understanding application-level interoperability: Scaling-out MapReduce over high-performance grids and clouds", Future Generation Computer Systems, vol. 27, issue 5, 2011.
Conference Proceedings
[fg-1977] Luckow, A., and S. Jha, "Abstractions for Loosely-Coupled and Ensemble-Based Simulations on Azure", IEEE International Conference on Cloud Computing Technology and Science, 2010.
[fg-1978] Kim, J., S. Maddineni, and S. Jha, "Building Gateways for Life-Science Applications using the Dynamic Application Runtime Environment (DARE) Framework", The 2011 TeraGrid Conference: Extreme Digital Discovery, 2011.
[fg-1979] Kim, J., S. Maddineni, and S. Jha, "Characterizing Deep Sequencing Analytics using BFAST: Towards a Scalable Distributed Architecture for Next-Generation Sequencing Data", The Second International Workshop on Emerging Computational Methods for the Life Sciences, 06/2011.
[fg-2721] Canonico, M., A. Lombado, and I. Lovotti, "CloudTUI: a multi Cloud platform Text User Interface", International conference on Perfomance Evaluation Methodologies and Tools, Turin, Italy, 12/2013.  Download: cloudtui.pdf (202.24 KB)
[fg-2441] Mitchell, J. E., G. Fox, R. Figueiredo, B. A. O'Leary, L. Hayden, S. Jha, M. Canonico, and J. Qiu, "FutureGrid education: Using case studies to develop a curriculum for communicating parallel and distributed computing concepts", XSEDE12, 07/2012.  Download: FutureGrid_Education_pdf.pdf (3.39 MB)
[fg-1976] Luckow, A., L. Lacinski, and S. Jha, "SAGA BigJob: An Extensible and Interoperable Pilot-Job Abstraction for Distributed Applications and Systems", 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2010.
[fg-1913] Yin, W., Y. Simmhan, and V. Prasanna, "Scalable Regression Tree Learning on Hadoop using OpenPlanet", International Workshop on MapReduce and its Applications (MAPREDUCE), 06/2012.
[fg-2266] Funika, W., and P. Koperek, "Scalable Resource Provisioning in the Cloud Using Business Metrics", Advanced Engineering Computing and Applications in Sciences (ADVCOMP'2011), 20-25 November 2011, Lisbon, Portugal, 2011, 2011.
[fg-1155] von Laszewski, G., J. Diaz, F. Wang, A. J. Younge, A. Kulshrestha, and G. Fox, "Towards Generic FutureGrid Image Management", TG11: ACM, 07/2011.  Download: TG11-image-repo-overview.docx (178.83 KB); fg-repo-generator-TG11.pptx (1.76 MB)
[fg-1916] Peluso, S., P. Ruivo, P. Romano, F. Quaglia, and L. Rodrigues, "When Scalability Meets Consistency: Genuine Multiversion Update-Serializable Partial Data Replication", The 32nd International Conference on Distributed Computing Systems, Macau, China, IEEE, 06/2012.
Conference Paper
[fg-1932] Diaz, J., G. von Laszewski, F. Wang, and G. Fox, "Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: jdiaz-IEEECloud2012_id-4656.pdf (555.62 KB); _ImageManagement_slides.ppt (4.12 MB)
[fg-1892] William, T., D. K. Berry, and R. Henschel, "Analysis and Optimization of a Molecular Dynamics Code using PAPI and the Vampir Toolchain", Cray User Group 2012, Stuttgart, CUG, 05/2012. Abstract  Download: 2012-CUG-pap142.pdf (2.82 MB); 2012-CUG-pap142-presentation.pdf (10.5 MB)
[fg-1015] Younge, A. J., R. Henschel, J. Brown, G. von Laszewski, J. Qiu, and G. C. Fox, "Analysis of Virtualization Technologies for High Performance Computing Environments", The 4th International Conference on Cloud Computing (IEEE CLOUD 2011), Washington, DC, IEEE, 07/2011.
[fg-2265] Funika, W., and P. Koperek, "Automatic Scaling in Cloud Computing Environments Based on Business Metrics", Conference on Parallel Programming and Applied Mathematics (PPAM'2011), 11-14 September 2011, Torun, Poland, LNCS, Springer, 2012 : NA, NA, 2011.
[6133211] Juve, G., and E. Deelman, "Automating Application Deployment in Infrastructure Clouds", Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, pp. 658 -665, 29 2011-dec. 1. Abstract
[fg-2588] Chen, W., R. F. da Silva, E. Deelman, and R. Sakellariou, "Balanced Task Clustering in Scientific Workflows", The 9th IEEE International Conference on e-Science (eScience 2013), to appear, Beijing, China, Oct 23-25, 2013, Submitted.  Download: balance.pdf (513.81 KB)
[fg-2820] Smith, W., and S. Smallen, "Building an Information System for a Distributed Testbed", the 2014 Annual ConferenceProceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment - XSEDE '14, Atlanta, GA, USANew York, New York, USA, ACM Press, pp. 1 - 8, 2014.
[fg-2833] de Silva, R. F., W. Chen, G. Juve, K. vahi, and E. Deelman, "Community Resources for Enabling Research in Distributed Scientific Workflows", the 10th IEEE International Conference on eScience 2014 (eScience 2014), Guaruja, SP, Brazil, Oct 20-24, 2014.  Download: communityresources-weiweichen.pdf (421.05 KB)
[Marathe:2013:CSH:2493123.2462919] Marathe, A., R. Harris, D. K. Lowenthal, B. R. de Supinski, B. Rountree, M. Schulz, and X. Yuan, "A comparative study of high-performance computing on the cloud", Proceedings of the 22nd international symposium on High-performance parallel and distributed computing, New York, NY, USA, ACM, pp. 239–250, 2013.  Download: cloud-final.pdf (194.15 KB)
[fg-1933] von Laszewski, G., J. Diaz, F. Wang, and G. Fox, "Comparison of Multiple Cloud Frameworks", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: laszewski-IEEECloud2012_id-4803.pdf (603.3 KB)
[ruan2012dacidr] Ruan, Y., S. Ekanayake, M. Rho, H. Tang, S. - H. Bae, J. Qiu, and G. Fox, "DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences", Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine: ACM, pp. 329–336, 2012.
[fg-2045] von Laszewski, G., H. Lee, J. Diaz, F. Wang, K. Tanaka, S. Karavinkoppa, G. C. Fox, and T. Furlani, "Design of a Dynamic Provisioning System for a Federated Cloud and Bare-metal Environment", Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, CA, IEEE, 09/2012.  Download: vonLaszewski-federated-cloud-07-14-2012.pdf (1.06 MB)