Publications 1990-2021

Selected Publications 1991-2021

Digital Science Center Publications

Reports and Papers

  1. Gregor von Laszewski, Anthony Orlowski, Richard H. Otten, Reilly Markowitz, Sunny Gandh, Adam Chai, Geoffrey C. Fox, Wo L. Chang (2021). “Using GAS for Speedy Generation of HybridMulti-Cloud Auto Generated AI Services ". IEEE COMPSAC 2021: Intelligent and Resilient Computing for a Collaborative World 45th Anniversary Conference .

  2. John B. Rundle, Andrea Donnellan, Geoffrey Fox, James P Crutchfield, Robert A Granat, “Nowcasting Earthquakes: Imaging the Earthquake Cycle in California with Machine Learning”, Earth and Space Science Open Archive, 28 Mar 2021, DOI 10.1002/essoar.10506614.1 ,

  3. Vibhatha Abeykoon Geoffrey Fox and Minje Kim and Saliya Ekanayake and Supun Kamburugamuve and Kannan Govindarajan and Pulasthi Wickramasinghe and Niranda Perera and Chathura Widanage and Ahmet Uyar and Gurhan Gunduz and Selahatin Akkas, "Stochastic gradient descent‐based support vector machines training optimization on Big Data and HPC frameworks", published in Concurrency and Computation: Practice and Experience: 30 March 2021 https://doi.org/10.1002/cpe.6292

  4. Quetzalcóatl Toledo-Marín, J; Fox, Geoffrey; Sluka, James P; Glazier, James A, " Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations" February 10, 2021 Arxiv Researchgate

  5. Thanh Nguyen, Tongbin Zhang, Geoffrey Fox, Sisi Zeng, Ni Cao, Chuandi Pan, Jake Y. Chen, “Linking Clinotypes to Phenotypes and Genotypes from Laboratory Test Results in Comprehensive Physical Exams " BMC Medical Informatics and Decision Making volume 21, Article number: 51 (2021). DOI Researchgate February 24, 2021

  6. Pulasthi Wickramasinghe, Geoffrey Fox, “Multidimensional Scaling for Gene Sequence Data with Autoencoders", Best paper award at Data Science conference CONF-CDS 2021 January 28 2021 Stanford online. Arxiv

  7. Bo Feng and Geoffrey Fox, “TSEQPREDICTOR: Spatiotemporal Extreme Earthquakes Forecasting for Southern California”, preprint December 20, 2020,. Arxiv

  8. Niranda Perera, Vibhatha Abeykoon,Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Pulasthi Wickramasinghe, Ahmet Uyar, Hasara Maithree, Damitha Lenadora, Geoffrey Fox, “A Fast, Scalable, Universal Approach For Distributed Data Reductions ", International Workshop on Big Data Reduction held with 2020 IEEE International Conference on Big Data Atlanta, GA December 10,2020

  9. César Fernández Ramírez, Jorge Antonio Silva-Castro, Miguel Albaladejo, Igor Danilkin, Andrew Jackura, Vincent Mathieu, Jannes Nys, Alessandro Pilloni, Adam Szczepaniak, Geoffrey Fox, “Nucleon resonance spectrum from Regge systematic”, Bulletin of American Physical Society, 2020 Fall Meeting of the APS Division of Nuclear Physics, Thursday–Sunday, October 29–November 1 2020

  10. Bo Feng, Qian Lou, Lei Jiang, and Geoffrey C. Fox, “CryptoGRU: Low Latency Privacy-Preserving Text Analysis With GRU”, Technical report October 21,2020. Arxiv .

  11. SungRyeol Yang, Geoffrey Fox, and Bokyoon Na, " Taxonomic Classification of Objects with Convolutional Neural Networks ", Special Session 4: Machine Learning on Big Data (MLBD 2020), Friday December 11,2020, IEEE Big Data Conference Atlanta GA. Technical Report Sep 06, 2020

  12. Geoffrey Fox, “DRAFT Deep Learning for Spatial Time Series ", Technical Report, 17 November 2020. ResearchGate

  13. Spidal Collaboration (NSF 1443054): Arizona State (Oliver Beckstein), Indiana (Geoffrey Fox, Judy Qiu, David Crandall, Gregor von Laszewski), Kansas (John Paden), Rutgers (Shantenu Jha), Stony Brook (Fusheng Wang), University of Virginia (Madhav Marathe, Anil Vullikanti) and Utah (Thomas Cheatham) ; “Summary Perspectives of the SPIDAL Project NSF #1443054 from 2014-2020 " Technical Report, October 26, 2020

  14. Qian Lou, Bo Feng, Geoffrey C. Fox, and Lei Jiang, “Glyph: Fast and Accurately Training Deep Neural Networks on Encrypted Data”, Technical report arxiv to appear in updated form at NeurIPS 2020

  15. H. He, W. Zhao, S. Huang, G. C. Fox, and Q. Wang, "Research on the Architecture and its Implementation for Instrumentation and Measurement Cloud," IEEE Trans. Serv. Comput., vol. 13, no. 5, pp. 944–957, 2020 [Online]. Available: http://dx.doi.org/10.1109/TSC.2017.2723006

  16. Dimuthu Wannipurage, “Tensorflow Integration with Twister2 " Technical Report from Independent Study August 5 2020

  17. Bokyoon Na and Geoffrey Fox, “Object Detection by a Super-Resolution Method and a Convolutional Neural Networks" in International Journal of Data Mining Science. Vol 1, Issue 1, pages 16-23, May 17 2021

  18. Vibhatha Abeykoon, Niranda Perera, Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Hasara Maithree, Pulasthi Wickramasinghe, Ahmet Uyar, Geoffrey Fox, “Data Engineering for HPC with Python " at 9th Workshop on Python for High-Performance and Scientific Computing, November 13, 2020. Held at SC20 conference

  19. César Fernández Ramírez, Jorge Antonio Silva-Castro, Miguel Albaladejo, Igor Danilkin, Andrew Jackura, Vincent Mathieu, Jannes Nys, Alessandro Pilloni, Adam Szczepaniak, Geoffrey Fox, " Abstract: FQ.00003 : Nucleon resonance spectrum from Regge systematic", 2020 Fall Meeting of the APS Division of Nuclear Physics

  20. W. Gao, J. Zhan, G. Fox, X. Lu, and D. Stanzione, “Benchmarking, Measuring, and Optimizing: Second BenchCouncil International Symposium ", Bench 2019, Denver, CO, USA, November 14–16, 2019, Revised Selected Papers. Springer Nature, July 29, 2020

  21. Yuchen Wang, Mingze Xu, John D. Paden, Lora S. Koenig, Geoffrey C. Fox, David J. Crandall, " Deep Tiered Image Segmentation for Detecting Internal Ice Layers in Radar Imagery " Technical Report July 23 2020. Arxiv: 2010.03712v1

  22. Bo Peng, Jiayu Li, Selahattin Akkas, Fugang Wang, Takuya Araki, Ohno Yoshiyuki, Judy Qiu, “Rank Position Forecasting in Car Racing", Technical Report July 12, 2020

  23. Geoffrey C. Fox, Gregor von Laszewski, Fugang Wang, and Saumyadipta Pyne "AICov: An Integrative Deep Learning Framework for COVID-19 Forecasting with Population Covariates”Technical Report July 3 2020 Arxiv with update . Published in J. data sci.(2021), 1-21, DOI 10.6339/21-JDS1007

  24. Ahmet F. Mustacoglu, Ferhat O. Catak, Geoffrey C. Fox, "Password-based encryption approach for securing sensitive data" Security and Privacy, July 1 2020 DOI and ResearchGate

  25. Chathura Widanage, Niranda Perera, Vibhatha Abeykoon, Supun Kamburugamuve, Thejaka Amila Kanewalaz, Hasara Maithreek, Pulasthi Wickramasinghe, Ahmet Uyar, Gurhan Gunduz, and Geoffrey Fox, "High Performance Data Engineering Everywhere", Technical report J une 30, 2020. 2020 IEEE International Conference on Smart Data Services (SMDS), 122-132.

  26. Ahmet Uyar, Gurhan Gunduz, Supun Kamburugamuve, Pulasthi Wickramasinghe, Chathura Widanage, Kannan Govindarajan, Niranda Perera, Vibhatha Abeykoon, Selahattin Akkas, Geoffrey Fox, "Twister2 Cross-Platform Resource Scheduler for Big Data", Technical Report June 30, 2020. 6th National High Performance Computing Conference Basarim 2020, Ankara Yıldırım Beyazıt University, Ankara Turkey October 8-9, 2020

  27. Geoffrey Fox, “Deep Learning Based Time Evolution" Technical Report June 8 2020, ResearchGate

  28. Qian Lou, Bo Feng, Geoffrey Charles Fox, Lei Jiang “Glyph: Fast and Accurately Training Deep Neural Networks on Encrypted Data" Technical report November 2019 updated May 30, 2020. ResearchGate Arxiv: 1911.07101v1

  29. Nesreen Ahmed, Richard Alo, Catherine Amelink, Young Yun Baek, Aashish Chudhary, Kristy Collins, Albert Esterline, Edward Fox, Geoffrey Fox, Aric Hagberg, Ron Kenyon, Chris J. Kuhlman, Jure Leskovec, Dustin Machi1, Madhav V. Marathe, Nataragan Meghanathan, Yasuo Miyasaki, Judy Qiu, Naren Ramakrishnan, S. S. Ravi, Ryan Rossi, Roc Sosic, Gregor von Laszewski, “net.science: A Cyberinfrastructure for Sustained Innovation in Network Science and Engineering" Technical Report May 18 2020

  30. Pete Beckman, Jack Dongarra, Nicola Ferrier, Geoffrey Fox, Terry Moore, Dan Reed, Micah Beck, “Harnessing the Computing Continuum for Programming Our World", Technical Report March 11 2019 published in “Fog Computing: Theory and Practice " published by Wiley and edited by Albert Zomaya Assad Abbas Samee Khan, DOI 25 April 2020

  31. JCS Kadupitiya, Geoffrey C. Fox and Vikram Jadhao, “Simulating Molecular Dynamics with Large Timesteps using Recurrent Neural Networks" arXiv: 2004.06493v2 and ResearchGate 12 April 2020. Revised and GitHub site.

  32. Bokyoon Na, Geoffrey C Fox, "Object Classifications by Image Super-Resolution Preprocessing for Convolutional Neural Networks", Advances in Science, Technology and Engineering Systems Journal (ASTESJ) Volume 5, Issue 2, Page No 476-483, 2020 DOI: 10.25046/aj050261 March 12 2020

  33. J. C. S. Kadupitiya, F. Sun, G. Fox, and V. Jadhao, “Machine learning surrogates for molecular dynamics simulations of soft materials ," J. Comput. Sci. , vol. 42, p. 101107, Apr. 2020 [Online]. Journal link

  34. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao "Abstract: L45.00002 : Recurrent Neural Networks Based Integrators for Molecular Dynamics Simulations", at Session L45: Emerging Trends in Molecular Dynamics Simulations and Machine Learning II, 8:00 AM–11:00 AM, Wednesday, March 4, 2020, Denver, Colorado

  35. Aristeidis Tsaris, Jacob Balma, Murali Emani, Steve Farrell, Geoffrey C Fox, Yin Junqi, Thorsten Kurth, Abid Malik, Prabhat, Mallikarjun Shankar, Venkatram Vishwanath, “Exploring Deep Learning for Science Benchmarks on DOE Supercomputers", Oak Ridge National Lab, Cray Inc., Argonne National Laboratory, Lawrence Berkeley National Laboratory, Brookhaven National Laboratory, Indiana University Bloomington, NVIDIA, insideHPC article and Exascale Computing Project Poster February 24, 2020

  36. Geoffrey Fox, and Shantenu Jha, “MLforCI and CIforML: Future Cyberinfrastructure" Technical Report February 23 2020 ResearchGate

  37. Geoffrey C. Fox, Gregor von Laszewski, “Automated Big Data REST Service Creation in Support of Big Data Applications" Technical Report December 26, 2019

  38. Online Book: E222 Spring 2019 Introduction to Clouds and Machine Learning Undergraduate Class 484 pages

  39. Online Book: Cloud Computing Topics Fall 2019 590 pages

  40. Online Book: Python for Cloud Computing Fall 2019 242 pages

  41. Online Book: Linux for Cloud Computing Fall 2019 40 pages

  42. Online Book: E516 Engineering Cloud Computing Class Lectures Fall 2019 62 pages

  43. Online Book: E516 Engineering Cloud Computing OpenStack and Chameleon Cloud Fall 2019 78 pages

  44. Online Book: E516 Engineering Cloud Computing Proceedings -- Student Projects Fall 2019 128 pages

  45. Online Book: E534 Big Data Applications and Analytics Class Lectures Fall 2018 141 pages

  46. Online Book: E534 Big Data Applications and Analytics Class (Deep Learning version) Lectures Fall 2019 73 pages

  47. Xinyuan Huang, Geoffrey C. Fox, Sergey Serebryakov, Ankur Mohan, Pawel Morkisz, Debojyoti Dutta, “Benchmarking Deep Learning for Time Series: Challenges and Directions", presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019

  48. Vibhatha Abeykoon, Supun Kamburugamuve, Kannan Govindrarajan, Pulasthi Wickramasinghe, Chathura Widanage, Niranda Perera, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, Gregor Von Laszewski, and Geoffrey Fox, “Streaming Machine Learning Algorithms with Big Data Systems " with update presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019

  49. Thanh Nguyen, Tongbin Zhang, Geoffrey Fox, Sisi Zeng, Ni Cao, Chuandi Pan, Jake Y. Chen, “Linking Clinotypes to Phenotypes and Genotypes from Laboratory Test Results in Comprehensive Physical Exams " submitted to MCBIOS 2019 Proceedings to be published in BMC Medical Informatics and Decision Making .

  50. Supun Kamburugamuve, Geoffrey Fox, Pulasthi Wickramasinghe, Niranda Perera, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, “Twister2 Status October 2019",Technical Report, October 10, 2019

  51. Victor Berger, Mingze Xu, Mohanad Al-Ibadi, Shane Chu, David Crandall, John Paden, Geoffrey Fox, Automated Ice-Bottom Tracking of 2D and 3D Ice Radar Imagery Using Viterbi and TRW-S , IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, Sept 2019, vol 12, no 9, pp. 3272-3285, DOI: 10.1109/JSTARS.2019.2930920

  52. Victor Berger, John Paden, Mohanad Al-Ibadi, David Crandall, Geoffrey Fox, Anjali Pare, Maryam Rahnemoonfar, Mingze Xu, Masoud Yari, “Comparison of 2-D and 3-D ice-bottom tracking algorithms ," in INTERNATIONAL GLACIOLOGICAL SOCIETY Five Decades of Radioglaciology, Stanford, California, USA, 2019.

  53. Yuchen Wang, David Crandall, Mingze Xu, Lora Koenig, John Paden, Geoffrey Fox, “Automatic detection of snow layers in radar images ", International Glaciological Society International Symposium on Five Decades of Radioglaciology, July 8-12, 2019.

  54. Vibhatha Abeykoon, Zhengchun Liu, Rajkumar Kettimuthu, Geoffrey Fox and Ian Foster,"Scientific Image Restoration Anywhere", 1st Annual Workshop on Large-Scale Experiment-in-the-Loop-Computing (XLOOP) SC19 Conference , Colorado Convention Center, November 18, 2019

  55. Geoffrey Fox and Shantenu Jha, “Next Generation Cyberinfrastructure for BDEC ", BDEC2 Meeting October 15-17, 2019, San Diego, California,

  56. Geoffrey Fox and Shantenu Jha, “Understanding ML driven HPC: Applications and Infrastructure ", 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California. Arxiv 1909.02363

  57. Geoffrey Fox and Shantenu Jha, “Learning Everywhere: A Taxonomy for the Integration of Machine Learning and Simulations ", 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California, Arxiv 1909.13340

  58. Pulasthi Wickramasinghe, Niranda Perera, Supun Kamburugamuve, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, Geoffrey Fox, “High-Performance Iterative Dataflow Abstractions in Twister2:TSet",Technical Report, September 2, 2019

  59. Fanbo Sun, JCS Kadupitiya, Geoffrey Fox, Vikram Jadhao, “Machine Learning Molecular Dynamics Simulations for Enhanced Student Learning", Technical Report September 5, 2019

  60. Vibhatha Abeykoon, Geoffrey Fox, Minje Kim, Saliya Ekanayake, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Niranda Perera, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, “Stochastic Gradient Descent Based Support Vector Machines Training Optimization on Big Data and HPC Frameworks", Technical Report August 7, 2019. Updated version June 28, 2020 published in Concurrency" li-bullet-0"> Hyungro Lee and Geoffrey C. Fox, " Big Data Benchmarks of High-Performance Storage Systems on Commercial Bare Metal Clouds", Proceedings of IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy

  61. Mahzad Khoshlessan, Ioannis Paraskevakos, Geoffrey C. Fox, Shantenu Jha, Oliver Beckstein, “Parallel Performance of Molecular Dynamics Trajectory Analysis", Technical Report June 21 2019

  62. Geoffrey Fox, “A review of the Learning Everywhere area or the Intersection of Machine Learning, Big Data and HPC ", June 8 2019.

  63. Geoffrey Fox, “Perspectives on High-Performance Computing in a Big Data World" or with frontispiece , ACM HPDC 2019 The 28th International Symposium on High-Performance Parallel and Distributed Computing, Phoenix, Arizona, USA - June 27, 2019. This describes the award talk “Perspectives on High-Performance Computing in a Big Data World" using video nugget . There is a Google Slides version and a YouTube video (short) or longer version in 5 parts. There was a plaque awarded

  64. Geoffrey Fox, Vibhatha Abeykoon, Selahattin Akkas, Kannan Govindarajan, Gurhan Gunduz, Supun Kamburugamuve, Niranda Perera, Ahmet Uyar, Pulasthi Wickramasinghe, Chathura Widanage, “Twister2 Demonstrations for BDEC2", BDEC2 Meeting May 14-16 2019, Poznan Poland

  65. Vibhatha Abeykoon, Geoffrey Fox and Minje Kim,"Performance Optimization on Model Synchronization in Parallel Stochastic Gradient Descent Based SVM",HPML 2019 : 2nd High Performance Machine Learning Workshop May 14 2019 as part of CCGrid2019 Larnaca Cyprus

  66. Pulasthi Wickramasinghe, Supun Kamburugamuve, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Niranda Perera, Ahmet Uyar , Gurhan Gunduz, Selahattin Akkas, Geoffrey Fox,"Twister2:TSet High-Performance Iterative Dataflow", Technical Report April 5 2019. Best paper award in 2019 International IEEE Conference on High Performance Big Data and Intelligent Systems. HPBD and IS2019 Shenzhen, China May 9-11 201

  67. C.-H. Hsu, G. Fox, G. Min, and S. Sharma, "Advances in big data programming, system software and HPC convergence," J. Supercomput., vol. 75, no. 2, pp. 489–493, Feb. 2019 DOI

  68. Geoffrey Fox, James A. Glazier, JCS Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, and Shantenu Jha, “Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation", accepted for HPBDC workshop at IPDPS , Rio de Janeiro, Brazil, Monday, May 20th, 2019. Arxiv:1902.10810)

  69. Geoffrey Fox, James A. Glazier, JCS Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, and Shantenu Jha, “Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation: Application Background", Technical Report February 16 2019

  70. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao, “Machine Learning for Auto-tuning of Simulation Parameters in Car-Parrinello Molecular Dynamics”, Bulletin of the American Physical Society for March meeting , 2019 - APS March 6, 2019; Boston, Massachusetts

  71. Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Twister2: Design of a Big Data Toolkit" in Concurrency and Computation, Practice and Experience Special issue for EXAMPI 2017 workshop November 12 2017 at SC17 conference, Denver CO 2017. Published as https://onlinelibrary.wiley.com/doi/full/10.1002/cpe.5189 .

  72. Geoffrey Fox and Gregor von Laszewski, “E534 Big Data Algorithms and Applications Class" as epub or PDF Class Book Fall 2018

  73. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao, “Machine learning for performance enhancement of molecular dynamics simulations", Technical Report December 28, 2018; International Conference on Computational Science ICCS2019 Faro, Algarve, Portugal 12-14 June 2019.

  74. Bokyoon Na and Geoffrey Fox, " Object Detection by a Super-Resolution Method and a Convolutional Neural Networks " in 4th Special Session on Intelligent Data Mining at IEEE International Conference on Big Data 2018 December 11, 2018, Westin Hotel, Seattle, WA, USA

  75. Sahil Tyagi, Bo Peng, Judy Qiu,"Anomaly Detection over Streaming Data:Indy 500", E500 Class report December 2018.

  76. Dilshan Niranda Perera “Coarse-grained and Fine-grained Analytics in a Single Framework", E500 Class report December 2018.

  77. Judy Qiu, “Real-Time Anomaly Detection from Edge to HPC-Cloud”, white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  78. Oliver Beckstein, Geoffrey Fox, Shantenu Jha, “Convergence of data generation and analysis in the biomolecular simulation community ", white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  79. Geoffrey Fox, “Computational and Data Intelligence linked in the Intelligent Aether for Applications”, white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  80. JCS Kadupitiya, Geoffrey C. Fox and Vikram Jadhao, “Machine Learning for Parameter Auto-tuning in Molecular Dynamics Simulations: Efficient Dynamics of Ions near Polarizable Nanoparticles", Technical report November 30 2018. The international journal of high performance computing applications to be published.

  81. Spidal Collaboration (NSF 1443054): Arizona State (Oliver Beckstein), Indiana (Geoffrey Fox, Judy Qiu, David Crandall, Gregor von Laszewski), Kansas (John Paden), Rutgers (Shantenu Jha), Stony Brook (Fusheng Wang), University of Virginia (Madhav Marathe, Anil Vullikanti) and Utah (Thomas Cheatham); “Contributions to High-Performance Big Data Computing", Technical Report September 30, 2018 with June 21, 2019 Update . Published as a chapter in " Future Trends of HPC in a Disruptive Scenario" Editors: Grandinetti, L., Joubert, G.R., Michielsen, K., Mirtaheri, S.L., Taufer, M., Yokota, R., IOS Press Volume 34 of Advances in Parallel Computing, ISBN print 978-1-61499-998-0, SEptember 2019

  82. JCS Kadupitiya, Nicholas Brunk, Sohile Ali, Geoffrey C. Fox, Vikram Jadhao, “Nanosphere Electrostatics Lab" tool on nanoHUB , doi: 10.4231/D34X54J88

  83. Judy Qiu, "Harp-DAAL for High Performance Big Data Computing", report for Intel Parallel Universe Magazine - Issue 32 , March 2018

  84. Bingjing Zhang, Bo Peng, Langshi Chen, Ethan Li, Yiming Zhou, Judy Qiu, “Introduction to Harp: when Big Data Meets HPC" Internal Report on Harp June 2017

  85. JPAC collaboration: J.A. Silva-Castro, C. Fernandez-Ramirez, M. Albaladejo, I.V. Danilkin, A. Jackura, V. Mathieu, J. Nys, A. Pilloni, A.P. Szczepaniak, G. Fox, “Regge phenomenology of the N* and Delta* poles", September 6, 2018, arXiv: 1809.01954 [hep-ph] Physical Review D, 2019

  86. John Paden, Victor Berger, Mohanad Al-Ibadi, Shane Chu, Mingze Xu, David Crandall, Geoffrey Fox, “Subglacial bed topography using machine learning and geostatistical analysis applied to 2D and 3D radar sounding", abstract for AGU Fall Meeting December 10-14 2018 Washington DC

  87. John Paden; Mingze Xu; Jordan Sprick; Sravya Athinarapu; David Crandall; David O Burgess; Martin J Sharp; Geoffrey C Fox; Carl Leuschen, “3D Imaging and Automated Ice Bottom Tracking of Canadian Arctic Archipelago Ice Sounding Data", Poster, American Geophysical Union (AGU) Fall Meeting , 2016

  88. Gregor von Laszewski Editor “Technology Snapshots Volume 1", Spring 2017 Intelligent Systems Engineering E616 Student Reports printed August 10 2018

  89. Gregor von Laszewski Editor “Technology Snapshots Volume 2", Spring 2017 Intelligent Systems Engineering E616 Student Reports printed August 10 2018

  90. M Asch, T Moore, R Badia, M Beck, P Beckman, T Bidot, F Bodin, F Cappello, A Choudhary, B de Supinski, E Deelman, J Dongarra, A Dubey, G Fox, H Fu, S Girona, W Gropp, M Heroux, Y Ishikawa, K Keahey, D Keyes, W Kramer, J-F Lavignon, Y Lu, S Matsuoka, B Mohr, D Reed, S Requena, J Saltz, T Schulthess, R Stevens, M Swany, A Szalay, W Tang, G Varoquaux, J-P Vilotte, R Wisniewski, Z Xu, I Zacharov, “Big data and extreme-scale computing: Pathways to Convergence-Toward a shaping strategy for a future software and data ecosystem for scientific inquiry", The International Journal of High Performance Computing Applications Volume: 32 issue: 4, page(s): 435-479 July 16, 2018. DOI

  91. Wo Chang, Geoffrey Fox, and NIST Big Data Public Working Group : Volume 3. “NIST Big Data Interoperability Framework: Volume 3, Use Cases and General Requirements" NIST technical report N IST SP 1500-3r1 June 2018

  92. Wo Chang, Gregor von Laszewski, and NIST Big Data Public Working Group : Volume 8. “NIST Big Data Interoperability Framework: Volume 8, Reference Architecture Interfaces" NIST technical report NIST SP 1500-9r1 June 2018

  93. JPAC Collaboration, J. Nys, A. N. Hiller Blin, V. Mathieu, C. Fernández-Ramírez, A. Jackura, A. Pilloni, J. Ryckebusch, A. P. Szczepaniak, G. Fox, “Global analysis of charge exchange meson production at high energies" Technical Report June 5 2018. Arxiv

  94. Hamid Kamangir, Maryam Rahnemoonfar, Dugan Dobbs, John Paden, Geoffrey Fox, “DEEP HYBRID WAVELET NETWORK FOR ICE BOUNDARY DETECTION IN RADAR IMAGERY ", in IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2018

  95. Fugang Wang, Gregor von Laszewski, Timothy Whitson, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo, “Evaluating the Scientific Impact of XSEDE", PEARC18 conference Technical Program, July 22-26, 2018 Pittsburgh PA. Older version here .

  96. Supun Kamburugamuve, Pulasthi Wickramasinghe, Kannan Govindarajan, Ahmet Uyar, Gurhan Gunduz, Vibhatha Abeykoon, Geoffrey Fox, " Twister:Net - Communication Library for Big Data Processing in HPC and Cloud Environments", Proceedings of Cloud 2018 Conference July 2-7 2018, San Francisco.

  97. Hyungro Lee, Kumar Satyam and Geoffrey C. Fox, “Evaluation of Production Serverless Computing Environments",Technical report April 3 2018 DOI , Third International Workshop on Serverless Computing ( WoSC3) 2018 July 2 2018 at Cloud 2018 Conference July 2-7 2018, San Francisco

  98. Hyungro Lee, Geoffrey C. Fox, “Big Data Benchmarks on Bare Metal Cloud" Technical Report May 31 2018.

  99. JPAC Collaboration: V. Mathieu, J. Nys, A. H. Blin, C. Fernandez-Ramirez, A. Jackura, M. Mikhasenko, V. Pauk, A. Pilloni, A. P. Szczepaniak, and G. Fox, “Structure of Pion Photoproduction Amplitudes" Technical Report May 25 2018. Arxiv June 21, 2018

  100. JPAC Collaboration: V. Mathieu, J. Nys, C. Fernández-Ramírez, A. Jackura, A. Pilloni, N. Sherrill, A. Szczepaniak, G. Fox, " Vector Meson Photoproduction with a Linearly Polarized Beam", 26 Feb 2018 Arxiv . Published DOI , Phys. Rev. D 97, 094003 – Published 9 May 2018

  101. Mark Asch and Terry Moore Editors, "BIG DATA AND EXTREME-SCALE COMPUTING: PATHWAYS TO CONVERGENCE Toward a Shaping Strategy for a Future Software and Data Ecosystem for Scientific Inquiry", Tech Report No. ICL-UT-17-08. Authors: J.-C. Andre, G. Antoniu, M. Asch, R. Badia Sala, M. Beck, P. Beckman, T. Bidot, F. Bodin, F. Cappello, A. Choudhary, B. de, Supinski, E. Deelman, J. Dongarra, A. Dubey, G. Fox, H. Fu, S. Girona, W. Gropp, M. Heroux, Y. Ishikawa, K. Keahey, D. Keyes, W. Kramer, J.-F. Lavignon, Y. Lu, S. Matsuoka, B. Mohr, T. Moore, D. Reed, S. Requena, J. Saltz, T. Schulthess, R. Stevens, M. Swany, A. Szalay, W. Tang, G. Varoquaux, J.-P. Vilotte, R. Wisniewski, Z. Xu, and, I. Zacharov

  102. Lei Jiang, Langshi Chen and Judy Qiu, " Performance Characterization of Multi-threaded Graph Processing Applications on Many-Integrated-Core Architecture", 2018 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), April 2-4, Belfast, Northern Ireland, United Kingdom, 2018.

  103. Bo Peng, Bingjing Zhang, Langshi Chen, Mihai Avram, Robert Henschel, Craig Stewart, Shaojuan Zhu, Emily Mccallum, Lisa Smith, Tom Zahniser, Jon Omer, Judy Qiu, “HarpLDA+: Optimizing Latent Dirichlet Allocation for Parallel Efficiency", the IEEE Big Data 2017 conference , Boston, MA, USA, December 11-14, 2017.

  104. Langshi Chen, Bo Peng, Sabra Ossen, Anil Vullikanti, Madhav Marathe, Lei Jiang, Judy Qiu, “High-Performance Massive Subgraph Counting using Pipelined Adaptive-Group Communication”, Technical Report, April 25 2018.

  105. Mohanad Al-Ibadi, Jordan Sprick, Sravya Athinarapu, Victor Berger, Theresa Stumpf, John Paden, Carl Leuschen, Fernando Rodríguez, Mingze Xu, David Crandall, Geoffrey Fox, David Burgess, Martin Sharp, Luke Copland, and Wesley Van Wychen, “Crossover Analysis and Automated Layer-Tracking Assessment of the Extracted DEM of the Basal Topography of the Canadian Arctic Archipelago Ice-Caps", Poster presentation at the 2018 IEEE Radar Conference , Oklahoma City, USA, April 23-27, 2018.

  106. Mingze Xu, Chenyou Fan, John Paden, Geoffrey Fox and David Crandall, “Multi-Task Spatiotemporal Neural Networks for Structured Surface Reconstruction", 2018 IEEE Winter Conference on Applications of Computer Vision ( WACV2018), March 12-14, 2018 at Harvey’s Casino in Lake Tahoe, NV/CA

  107. Hyungro Lee, Advisor: Geoffrey C. Fox, “Event-driven Computing on HPC: Experiments with Scientific Applications" RIKEN AICS HPC Youth Workshop FY2017 Feb 7-8 2018, AICS International Symposium in KOBE, JAPAN.

  108. Ioannis Paraskevakos, Andre Luckow, George Chantzialexiou, Mahzad Khoshlessan, Oliver Beckstein, Geoffrey C. Fox, Shantenu Jha, " Task-parallel Analysis of Molecular Dynamics Trajectories", Technical Report 23 January 2018 arXiv , Proceedings of ICPP 2018, 47th International Conference on Parallel Processing, August 13-16, 2018, University of Oregon, Eugene, Oregon, USA

  109. Victor Berger, Mingze Xu, David Crandall, John Paden, Geoffrey C. Fox, “AUTOMATED TRACKING OF 2D AND 3D ICE RADAR IMAGERY USING VITERBI AND TRW-S", Technical Report January 9, 2018. Published in IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2018

  110. Hamid Kamangir, Maryam Rahnemoonfar, Dugan Dobbs, John Paden, Geoffrey Fox, “DETECTING ICE LAYERS IN RADAR IMAGES WITH DEEP LEARNING", Technical Report January 9, 2018

  111. Kadupitiya Kadupitige, “Intersection of HPC and Machine Learning", Final Report of Independent Study December 26, 2017

  112. Kadupitiya Kadupitige, “Performance enhancement of Ionic structure in liquids confined by dielectric interfaces (A nanoconfinement framework)", Final Report on Semester research, December 26, 2017

  113. Kadupitige Kadupitiya, Suresh Marru, Geoffrey C. Fox, Vikram Jadhao, “Ions in Nanoconfinement" tool on nanoHUB , doi: 10.4231/D3T14TR83 21 December 2017

  114. Andrew J. Younge, Shantenu Jha, and Geoffrey C. Fox, “HPC and Big Data Convergence for Extreme Heterogeneous Systems", December 1, 2017

  115. Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Twister2: Design of a Big Data Toolkit" in EXAMPI 2017 workshop November 12 2017 at SC17 conference, Denver CO 2017.

  116. J. Nys, V. Mathieu, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, A. Pilloni, N. Sherrill, J. Ryckebusch, A. P. Szczepaniak, G. Fox (JPAC Collaboration), “Features of pi Delta Photoproduction at High Energies", Technical report 7 November 2017 Arxiv . Published DOI Physics Letters B, Volume 779, 10 April 2018, Pages 77-81

  117. Kannan Govindarajan, Supun Kamburugamuve, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Task Scheduling in Big Data - Review, Research: Challenges, and Prospects" Technical Report October 31 2017 published in 9th INTERNATIONAL CONFERENCE ON ADVANCED COMPUTING December 14-16, 2017 Anna University, MIT Campus, Chennai

  118. Langshi Chen, Bo Peng, Zhao Zhao, Saliya Ekanayake, Anil Vullikanti, Madhav Marathe, Shaojuan Zhu, Emily Mccallum, Lisa Smith, Lei Jiang, Judy Qiu, “A New Pipelined Adaptive-Group Communication for Large-Scale Subgraph Counting", Technical Report October 22 2017

  119. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham), “Summary of NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science”, September 23 2017.

  120. Geoffrey Fox, “Special Issue on 12th International Workshop on Java Technologies for Real-Time and Embedded Systems JTRES2014", Editorial for Concurrency and Computation: Practice and Experience, 2017. Published DOI Volume 29, issue 22, 25 November 2017

  121. Judy Qiu, Supun Kamburugamuve, Hyungro Lee, Jerome Mitchell, Rebecca Caldwelly, Gina Bullockz, Linda Hayden, “Teaching, Learning and Collaborating through Cloud Computing Online Classes”, technical report September 2017.

  122. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low latency stream processing: Apache Heron with Infiniband and Intel Omni-Path", technical report September 2017. To be presented at UCC conference at Austin Texas December 5-8, 2017.

  123. Zhao Zhao, Langshi Chen, Mihai Avram, Meng Li, Guanying Wang, Ali Butt, Maleq Khan, Madhav Marathe, Judy Qiu, Anil Vullikanti, " Finding and counting tree-like subgraphs using MapReduce", technical report, August 2017.

  124. JPAC Collaboration: V. Mathieu, J. Nys, A. Pilloni, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, V. Pauk, A. P. Szczepaniak, G. Fox, “Analyticity Constraints for Hadron Amplitudes: Going High to Heal Low Energy Issues", 25 August 2017, arXiv:1708.07779

  125. Geoffrey C. Fox, Vatche Ishakian, Vinod Muthusamy, Aleksander Slominski, “Status of Serverless Computing and Function-as-a-Service(FaaS) in Industry and Research", Report from workshop and panel at the First International Workshop on Serverless Computing ( WoSC) Atlanta, June 5 2017 DOI arXiv:1708.08028

  126. Supun Kamburugamuve and Geoffrey Fox, “Designing Twister2: Efficient Programming Environment Toolkit for Big Data" Digital Science Center, technical report August 6 2017 DOI

  127. Mark McCombe, Gregor von Laszewski and Geoffrey C. Fox, " Teaching Big Data and Open Source Software on Chameleon Cloud", Chameleon User Meeting , September 13-14 2017 in the Theory and Computer Science building at the Argonne National Laboratory

  128. Gregor von Laszewski and Geoffrey C. Fox, “Automated Sharded MongoDB Deployment and Benchmarking for Big Data Analysis", Chameleon User Meeting , September 13-14 2017 in the Theory and Computer Science building at the Argonne National Laboratory

  129. L. Chen, J. Qiu. “Development of Harp-DAAL Interface" Technical Report (December 2016)

  130. L. Chen, J. Qiu. “Harp-DAAL: A High Performance Data-Intensive Machine Learning Framework" Technical Report (March 2017)

  131. B. Peng, B. Zhang, L. Chen, M. Avram, R. Henschel, C. Stewart, S. Zhu, E. Mccallum, L. Smith, T. Zahniser, J. Omer, J. Qiu. " HarpLDA+: Optimizing Latent Dirichlet Allocation for Parallel Efficiency" Technical Report (August 2017) to be published in IEEE Big Data conference December 11-14 2017, Boston, MA

  132. A. Jackura, C. Fernandez-Ramirez, M. Mikhasenko, A. Pilloni, V. Mathieu, J. Nys, V. Pauk, A. P. Szczepaniak, G. Fox, and COMPASS Collaboration(235 total authors), “New analysis of ηπ tensor resonances measured at the COMPASS experiment ", 10 July 2017, CERN-EP-2017-169 , arXiv:1707.02848 [hep-ph] , April 2018, Physics Letters B 779 published

  133. hengjing he, Wei Zhao, Songling Huang, Geoffrey Fox and Qing Wang, “Research on the Architecture and its Implementation for Instrumentation and Measurement Cloud" IEEE Transactions on Services Computing, 4 July 2017, DOI :10.1109/TSC.2017.2723006

  134. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low Latency Stream Processing: Twitter Heron with Infiniband and Omni-Path", Proceedings of Strata Data Conference New York NY September 26-28, 2017

  135. Mingze Xu, David J. Crandall, Geoffrey C. Fox, John D. Paden, " AUTOMATIC ESTIMATION OF ICE BOTTOM SURFACES FROM RADAR IMAGERY" Published in ICIP2017, 2017 IEEE International Conference on Image Processing, at the China National Convention Center in Beijing, China from 17-20 September 2017

  136. M. Rahnemoonfar; G. C. Fox; M. Yari; J. Paden, “[Automatic Ice
    Surface and Bottom Boundaries Estimation in Radar Imagery Based on
    Level-Set Approach](http://infomall.org/publications/ice_rev1.pdf)
    ," in IEEE Transactions on Geoscience and Remote Sensing , vol.55,
    Issue 9, pp.1-8 DOI
    10.1109/TGRS.2017.2702200

  137. Geoffrey C. Fox and Shantenu Jha, “A Tale of Two Convergences: Applications and Computing Platforms", Extended abstract for 2017 New York Scientific Data Summit ( NYSDS'17) Data-Driven Discovery in Science and Industry, August 6-9, 2017

  138. Geoffrey C. Fox, Devarshi Ghoshal, Shantenu Jha, Andre Luckow, Lavanya Ramakrishnan, “Streaming Computational Science: Applications, Technology and Resource Management for HPC" Extended abstract for 2017 New York Scientific Data Summit ( NYSDS'17) Data-Driven Discovery in Science and Industry, August 6-9, 2017

  139. Geoffrey C. Fox, Shantenu Jha, “Conceptualizing A Computing Platform for Science Beyond 2020: To Cloudify HPC, or HPCify Clouds?", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  140. Hyungro Lee and Geoffrey C. Fox, “Efficient Software Defined Systems using Common Core Components", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  141. Langshi Chen, Bo Peng, Bingjing Zhang, Tony Liu, Yiming Zou, Lei Jiang, Robert Henschel, Craig Stewart, Zhang Zhang, Emily Mccallum, Tom Zahniser, Jon Omer, Judy Qiu, “Benchmarking Harp-DAAL: High Performance Hadoop on KNL Clusters ", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  142. Hyungro Lee, “Software Defined Systems with DevOps Tools and Infrastructure Provisioning ", Ph.D. Forum at IPDPS conference Orlando FL May 30-June 2, 2017

  143. Supun Kamburugamuve, “Designing Efficient Programming Environment Toolkits for Big Data Applications: Integrating Parallel and Distributed Computing Runtimes", Ph.D. Thesis Proposal Indiana University July 6 2017

  144. Bingjing Zhang “HARP: A MACHINE LEARNING FRAMEWORK ON TOP OF THE COLLECTIVE COMMUNICATION LAYER FOR THE BIG DATA SOFTWARE STACK", Indiana University Ph.D. Thesis May 2017

  145. V. Mathieu, J. Nys, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, A. Pilloni, A. P. Szczepaniak, G. Fox, “On the η and η’ Photoproduction Beam Asymmetry at High Energies”, (Joint Physics Analysis Center) Arxiv 1704.07684 JLAB-THY-17-2450 April 25, 2017. Published DOI Physics Letters B Volume 774, 10 November 2017, Pages 362-367

  146. Jim Bottum, Dustin Atkins, Alan Blatecky, Rick McMullen, Todd Tannenbaum, Jan Cheetham, Jim Wilgenbusch, Karan Bhatia, Erik Deumens, Barr von Oehsen, Geoffrey C. Fox, Marcin Ziolkowski, Asbed Bedrossian, Dan Fay, “The Future of Cloud for Academic Research Computing", Results of an NSF-Supported Cloud Forward Workshop Washington DC, Westin Hotel, December 7-8 2016

  147. Geoffrey C. Fox and Shantenu Jha, “HPC in a Mist of Cloud Technologies and Infrastructures", Internal Report April 8, 2017

  148. Zhao Zhao, Meng Li, Guanying Wang, Ali Butt, Maleq Khan, Madhav Marathe, Judy Qiu, Anil Vullikanti, “Finding and counting subgraphs using MapReduce", April 2017

  149. Bingjing Zhang, Bo Peng, Judy Qiu, "Parallelizing Big Data Machine Learning Applications with Model Rotation", in the book series on Advances in Parallel Computing published by IOS Press, 2017.

  150. Fox, Geoffrey; Jha, Shantenu; Ramakrishnan, Lavanya; " STREAM2016: Streaming Requirements, Experience, Applications and Middleware Workshop", Final Report of Workshop March 22-23 2016 at Washington DC, LBNL--1006355 October 1, 2016

  151. Hyungro Lee, “Building Software Defined Systems on HPC and Clouds", PhD Proposal Indiana University February 19 2017

  152. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Tutorial Program ", BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017 DOI

  153. Badi’ Abdul-Wahid, Hyungro Lee, Gregor von Laszewski, and Geoffrey Fox, “Scripting Deployment of NIST Use Cases" Technical Report January 20 2017 DOI

  154. Geoffrey Fox,"Approaches to Physical Optimization", Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, Houston, Texas, USA, March 25-27, 1991 DOI

  155. Geoffrey Fox, “Special Issue on Java Technologies for Real-Time and Embedded Systems JTRES2013", Concurrency and Computation: Practice and Experience, 2017.

  156. Pulasthi Wickramasinghe, Geoffrey Fox, “Similarities and Differences Between Parallel Systems and Distributed Systems", Technical Report January 20 2017

  157. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox, “Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink", The International Journal of High Performance Computing Applications, July 2, 2017 DOI

  158. Jangwon Lee, Jingya Wang, David Crandall, Selma Sabanovic, and Geoffrey Fox, Real-Time, "Cloud-based Object Detection for Unmanned Aerial Vehicles", The First IEEE International Conference on Robotic Computing Taichung, Taiwan April 10-12 2017

  159. Mohanad Al-Ibadi, Jordan Sprick, Sravya Athinarapu, Theresa Stumpf, John Paden, Carl Leuschen, Fernando Rodríguez, Mingze Xu, David Crandall, Geoffrey Fox, David Burgess, Martin Sharp, Luke Copland, and Wesley Van Wychen, “DEM EXTRACTION OF THE BASAL TOPOGRAPHY OF THE CANADIAN ARCHIPELAGO ICE CAPS VIA 2D AUTOMATED LAYER-TRACKER", Technical report January 9 2017, 2017 IEEE International Geoscience and Remote Sensing Symposium , July 23–28, 2017, Fort Worth, Texas, USA

  160. Maryam Rahnemoonfar, Amin Abbasi Habashi, John Paden, Geoffrey C. Fox, “AUTOMATIC ICE THICKNESS ESTIMATION IN RADAR IMAGERY BASED ON CHARGED PARTICLES CONCEPT", Technical report January 9 2017, 2017 IEEE International Geoscience and Remote Sensing Symposium , July 23–28, 2017, Fort Worth, Texas, USA

  161. Supun Kamburugamuve, “Demonstration of Turtlebot controlled in cloud", for CES 2017 Las Vegas January 5-8, 2017.

  162. J. Nys, V. Mathieu, C. Fernández-Ramírez, A. N. Hiller Blin, A. Jackura, M. Mikhasenko, A. Pilloni, A. P. Szczepaniak, G. Fox, J. Ryckebusch, “Finite-Energy Sum Rules in Eta Photoproduction off the Nucleon", arXiv link . Phys. Rev. D 95, 034014 – Published 15 February 2017

  163. Ahmet Sayar, Marlon Pierce, Geoffrey C. Fox, “An adaptive range-query optimization technique with distributed replicas", Central South University Press and Springer, Journal of Central South University, January 2014, Volume 21, Issue 1, pp 190–198. DOI: 10.1007/s11771-014-1930-7

  164. Davis CA, Ciampaglia GL, Aiello LM, Chung K, Conover MD, Ferrara E, Flammini A, Fox GC, Gao X, Gonçalves B, Grabowicz PA, Hong K, Hui P, McCaulay S, McKelvey K, Meiss MR, Patil S, Peli Kankanamalage C, Pentchev V, Qiu J, Ratkiewicz J, Rudnick A, Serrette B, Shiralkar P, Varol O, Weng L, Wu T, Younge AJ, Menczer F. (2016) “OSoMe: the IUNI observatory on social media” . PeerJ Computer Science 2 : e87 DOI for paper and preprint

  165. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham)” Datanet: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science NSF14-43054 Progress Report " July 2016 21 month Project Report

  166. Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Geoffrey Charles Fox, “Java Thread and Process Performance for Parallel Machine Learning on Multicore HPC Clusters", Technical Report August 8 2016, DOI Published in 2016 IEEE International Conference on Big Data, December 5 - December 8, 2016 • Washington DC, USA with this version .

  167. James Fox, Yiming Zou, Judy Qiu “Software Frameworks for Deep Learning at Scale" with summary “RaPyDLI Deep Learning Framework" Internal Indiana University Technical Report July 29 2016

  168. Dennis Gannon, “A Quick Dive into Cloud Data Streaming Technology", paper adapted from the blog at www.esciencegroup.com May 24 2016

  169. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, Supun Kamburugamuve, “White Paper: Big Data, Simulations and HPC Convergence", Technical Report May 20 2016 DOI . Presented at BDEC Frankfurt workshop June 16 2016

  170. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena, Milinda Pathirage, Geoffrey Fox, “TSmap3D: Browser Visualization of High Dimensional Time Series Data", Technical report May 10 2016. Published in Advances in High Dimensional Big Data (2nd Workshop) in 2016 IEEE International Conference on Big Data, December 5 - December 8, 2016 • Washington DC, USA with this version .

  171. Rick Wagner, Philip Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineti (San Diego Supercomputer Center), Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox, "User Managed Virtual Clusters in Comet", Proceedings of XSEDE All Hands Meeting , Miami July 17-21, 2016. ACM Digital Library DOI 10.1145/2949550.2949555

  172. Maryam Rahnemoonfar, Masoud Yari, Geoffrey C. Fox, “Automatic polar ice thickness estimation from SAR images", SPIE Defense + Security Conference Baltimore Convention Center April 18 2016

  173. Hengjing He, Wei Zhao, Songling Huang, Geoffrey C. Fox, "Research on the Architecture and its implementation for Instrumentation and Measurement Cloud", Technical Report February 2016

  174. Bingjing Zhang, Peng Bo, Judy Qiu, “Model Data-Centric Computation Abstractions in Machine Learning Applications", in 3rd Workshop on Algorithms and Systems for MapReduce and Beyond (BeyondMR2016), held in conjunction with SIGMOD/PODS2016 , July 1, 2016

  175. Bingjing Zhang, Bo Peng, Judy Qiu, “High Performance LDA through Collective Model Communication Optimization”, Proceedings of International Conference on Computational Science ( ICCS2016) conference, June 6-8, 2016, San Diego, California.

  176. Bingjing Zhang,"A Collective Communication Layer for the Software Stack of Big Data Analytic s", Doctoral Symposium. Proceedings of IEEE International Conference on Cloud Engineering ( IC2E2016) Conference, April 4-8, 2016, Berlin, Germany.

  177. Sangyoon Oh, Mehmet Aktas, Marlon Pierce, Geoffrey Fox, " Architecture for high-performance web service communications using an information service", WSEAS Transactions on Computers, Issue 7 Vol. 5, July 2006.

  178. Hyungro Lee, Min Su Lee, Wazim Mohammed Ismail, Mina Roh, Sangyoon Oh, Geoffrey C. Fox, Haixu Tang, "MGEScan: a Galaxy based system for identifying retrotransposons in genomes", Published in Bioinformatics (2016) 32 (16): 2502-2504, Oxford Journal 2016 DOI

  179. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, and Supun Kamburugamuve, “Big Data, Simulations and HPC Convergence " Technical Report January 30 2016. DOI: 10.13140/RG.2.1.1858.8566 for WBDB 2015 Seventh Workshop on Big Data Benchmarking, New Delhi India, December 14, 2015. Published in Springer Lecture Notes in Computer Science LNCS 10044 DOI

  180. Supun Kamburugamuve, Saliya Ekanayake, Milinda Pathirage, Geoffrey Fox, “Towards High Performance Processing of Streaming Data in Large Data Centers " Technical Report January 26 2016. Published in proceedings of HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016

  181. Andrew J. Younge, Christopher Reidy, Robert Henschel, Geoffrey C. Fox, “Evaluation of SMP Shared Memory Machines for Use With In-Memory and OpenMP Big Data Applications", Technical Report January 23 2016. Published in proceedings of HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016. 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), May 2016, pp. 1597-1606.

  182. Ahmet F. Mustacoglu, Ahmet E. Topcu, Ferhat O. Catak, Geoffrey C. Fox, “Cloud-enabled Digital Information Service Framework", Technical Report January 20 2016

  183. Supun Kamburugamuve and Geoffrey Fox, "Survey of Distributed Stream Processing" , Technical Report January 8 2016

  184. Saliya Ekanayake, Supun Kamburugamuve and Geoffrey Fox, “SPIDAL: High Performance Data Analytics with Java and MPI on Large Multicore HPC Clusters ", Technical Report January 5 2016; Proceedings of 24th High Performance Computing Symposium (HPC 2016), April 3-6, 2016, Pasadena, CA, USA as part of the SCS Spring Simulation Multi-Conference (SpringSim'16)

  185. DELSA Global (18 authors including Geoffrey Fox and led by Eugene Kolker), “In praise of open research measures " Nature, 06/13/print, 2013. 498(7453): p. 170-170. DOI:10.1038/498170b or ResearchGate , December 2012

  186. Jangwon Lee, Jingya Wang, David Crandall, Selma Sabanovic and Geoffrey Fox, “Real-Time Object Detection for Unmanned Aerial Vehicles based on Cloud-based Convolutional Neural Networks", Technical Report December 2015

  187. Tak Lon (Stephen) Wu, Judy Qiu, Towards an Understanding of Scalable Query and Data Analysis for Social Media Data and Analysis on High-Level Dataflow Systems , MTAGS workshop , SC15 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015

  188. Bingjing Zhang, Bo Peng, Judy Qiu, Parallel LDA Through Synchronized Communication Optimizations , Technical report November 16 2015.

  189. Supun Kamburugamuve, Saliya Ekanayake, Pulasthi Wickramasinghe, Milinda Pathirage and Geoffrey Fox, Dimension Reduction and Visualization of the Structure of Financial Systems , Technical Report November 26 2015. WebPlotViz Homepage

  190. Geoffrey L. House, Saliya Ekanayake, Yang Ruan, Ursel Schütte, Wittaya Kaonongbua, Geoffrey Fox, Yuzhen Ye, James D. Bever, " Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering ", Applied and Environmental Microbiology, American Society of Microbiology, June 3 2016. DOI .

  191. Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan, “STREAM2015 Final Report" of Workshop Indianapolis October 27-28, 2015. DOI

  192. Supun Kamburugamuve, Geoffrey C. Fox, Streaming Applications for IOT with Real Time QoS , Streaming and Steering Applications: Requirements and Infrastructure STREAM2015 workshop white paper October 27-29 2015

  193. Geoffrey Fox, Sidd Maini, Howard Rosenbaum, David Wild, Data Science and Online Education , Proceedings of DTW: 2015 Data Teaching Workshop – 2nd IEEE STC CC and RDA Workshop on Curricula and Teaching Methods in Cloud Computing, Big Data, and Data Science as part of CloudCom 2015 , Vancouver, Nov 30-Dec 3, 2015.

  194. Maryam Rahnemoonfar, Geoffrey C. Fox, Masoud Yari, Automatic Bedrock and Ice Layer Boundaries Estimation in Radar Imagery Based on Level Set Approach , Technical report September 17 2015

  195. Ahmet F. Mustacoglu, Geoffrey C. Fox, "A novel digital information service for federating distributed digital entities", Information Systems, Volume 55, January 2016, Pages 20–36

  196. Jahanzeb Maqbool, Sangyoon Oh, Geoffrey C. Fox, "Evaluating ARM HPC clusters for scientific workloads", DOI Concurrency and Computation: Practice and Experience Volume 27, Issue 17, 10 December 2015, Pages 5390–5410

  197. Geoffrey Fox, Judy Qiu, Shantenu Jha, and Supun Kamburugamuve, Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies , Technical report August 22 2015

  198. Supun Kamburugamuve, Hengjing He, Geoffrey Fox, and David Crandall, “Cloud-based Parallel Implementation of SLAM for Mobile Robots” . Technical report July 18 2015.Published in International Conference on Internet of things and Cloud Computing (ICC 2016) The Møller Centre-CHURCHILL COLLEGE, Cambridge, United Kingdom, March 22-23 2016

  199. Gregor von Laszewski, Cloudmesh Virtual Cluster Management for Data Intensive Applications , DePy 2015 1st Annual Conference on Python applications in Data Analysis, Machine Learning, and Web, Chicago, Ill, May 29-30 2015

  200. Hengjing He, Supun Kamburugamuve, and G.C. Fox, Cloud based real-time multi-robot collision avoidance for swarm robotics Technical Report, May 7, 2015. Published in International Journal of Grid and Distributed Computing.

  201. V. Mathieu, I. V. Danilkin, C. Fernández-Ramírez, M. R. Pennington, D. Schott, A. P. Szczepaniak, G. Fox, Toward Complete Pion Nucleon Amplitudes , JLAB-THY-15-205 arXiv:1506.01764 June 5 2015. Phys. Rev. D 92, 074004 (2015)

  202. V. Mathieu, G. Fox, A. P. Szczepaniak, Neutral Pion Photoproduction in a Regge Model , arXiv:1505.02321 , May 9 2015. Phys. Rev. D 92, 074013 (2015) .

  203. Tak-Lon Wu, Bingjing Zhang, Clayton Davis, Emilio Ferrara, Sandra Flammini, Filippo Menczer, Judy Qiu, Scalable Query and Analysis for Social Networks: An Integrated High-Level Dataflow System with Pig and Harp, technical report, May 2015

  204. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack Invited talk at 2nd International Workshop on Scalable Computing For Real-Time Big Data Applications (SCRAMBL'15) May 4 2015 at.CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China

  205. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow, Implications of the HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack for workflows , Technical report May 17 2015. Submitted to Workshop on the Future of Scientific Workflows, Washington DC April 20-21 2015

  206. Geoffrey Fox, Shantenu Jha, and Lavanya Ramakrishnan, Scalable HPC Workflow Infrastructure for Steering Scientific Instruments and Streaming Applications . Technical report April 14 2015. Submitted to Workshop on the Future of Scientific Workflows, Washington DC April 20-21 2015

  207. Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox, Jilu Li, John Paden, Scalability Analysis of the Multi-Look Time Domain Processor on XSEDE Compute Resources , Technical report April 2015

  208. Judy Qiu, Bingjing Zhang, Thomas Wiggins, Implementing High Performance Computing with the Apache Big Data Stack: Experience with Harp , Globus World April 14-15 2015 Argonne National Laboratory (near Chicago Illinois, USA.

  209. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies March 9 2015. See web site

  210. Geoffrey Fox, Supun Kamburugamuve, Hengjing He Current and Planned IoT Cloud Research at Digital Science Center March 5 2015 and updated June 20 2015

  211. Geoffrey C. Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Proceedings of 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday Annapolis October 14 2014 DOI ACM Proceedings

  212. Geoffrey C. FOX, Shantenu JHA, Judy QIU, Saliya EKANAYAKE and Andre LUCKOW Towards a Comprehensive Set of Big Data Benchmarks Technical Report submitted for publication February 15 2015. Chapter in Big Data and High Performance Computing, Lucio Grandinetti and Gerhard Joubert, Editors. 2015, IOS. DOI

  213. Saliya Ekanayake Towards a Systematic Approach to Big Data Benchmarking Indiana University PhD Thesis Proposal February 4 2015

  214. Andrew J. Younge, John Paul Walters, Stephen P. Crago, Geoffrey C. Fox Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirect 11th ACM SIGPLAN/SIGOPS International Conference on Virtual Execution Environment ( VEE'15) Istanbul March 14-15 2015

  215. Geoffrey Fox, Shantenu Jha, Judy Qiu, Andre Luckow; Ogres: A Systematic Approach to Big Data Benchmarks (also here) White paper at workshop on Big Data and Extreme-scale Computing ( BDEC) Barcelona, January 29 to January 30, 2015, Barceló Sants Hotel

  216. Xiaoming Gao (Advisor Judy Qiu) Scalable Architecture for Integrated Batch and Streaming Analysis of Big Data Indiana University PhD Thesis Exam January 21 2015

  217. E. Kolker and others including Geoffrey Fox, Towards more transparent and reproducible omics studies through a common metadata checklist and data publications Big Data Journal, Volume 1, Number 4, 2013

  218. E. Kolker and others including Geoffrey Fox, Towards more transparent and reproducible omics studies through a common metadata checklist and data publications , OMICS. 2014 Jan. 18(1):10-4. doi: 10.1089/omi.2013.0149.

  219. Geoffrey Fox FutureGrid NSF Outcomes Technical Report January 11 2015

  220. Sidd Maini and Geoffrey Fox, Building a Culturally Sensitive portal for Indigenous Nations Unpublished Technical report on e-humanity project

  221. Sidd Maini, Final NEH Narrative , Unpublished Technical report on e-humanity project Dec 21 2012

  222. Bingjing Zhang, Yang Ruan, Judy Qiu Harp: Collective Communication on Hadoop IEEE International Conference on Cloud Engineering ( IC2E) conference Tempe AZ March 9-12 2015

  223. Judy Qiu, Geoffrey Fox, Shantenu Jha Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies December 24 2014 Technical Report December 24 2014. See web site .updated as March 9 2015 and May 31 2015

  224. M. Battaglieri, B. J. Briscoe, A. Celentano, S.-U. Chung, A. D'Angelo, R. De Vita, M. Döring, J. Dudek, S. Eidelman, S. Fegan, J. Ferretti, G. Fox, G. Galata, H. Garcia-Tecocoatzi, D. I. Glazier, B. Grube, C. Hanhart, M. Hoferichter, S. M. Hughes, D. G. Ireland, B. Ketzer, F. J. Klein, B. Kubis, B. Liu, P. Masjuan, V. Mathieu, B. McKinnon, R. Mitchell, F. Nerling, S. Paul, J. R. Pelaez, J. Rademacker, A. Rizzo, C. Salgado, E. Santopinto, A. V. Sarantsev, T. Sato, T. Schlüter, M. L. L. da Silva, I. Stankovic, I. Strakovsky, A. Szczepaniak, A. Vassallo, N. K. Walford, D. P. Watts, L. Zana Analysis Tools for Next-Generation Hadron Spectroscopy Experiments Proceedings of the ATHOS 2012 and ATHOS 2013 meetings in ArXiv 30 March 2015

  225. Hyungro Lee PhD Qualifying paper Virtualization Basics: Understanding Techniques and Fundamentals December 8 2014

  226. Hyungro Lee PhD Qualifying paper Using Bioinformatics Applications on the Cloud December 8 2014

  227. Supun Kamburugamuve, Leif Christiansen, Geoffrey Fox A Framework for Real-Time Processing Processing of Sensor Data in the Cloud , Journal of Sensors, 2015. 2015: p. 11. DOI:10.1155/2015/468047.

  228. Andrew Younge, John Paul Walters, Geoffrey Fox Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirect Technical report submitted for publication November 25, 2014

  229. Bingjing Zhang, Yang Ruan, Judy Qiu Harp: Collective Communication on Hadoop Technical Report November 17 2014

  230. Xiaoming Gao, Emilio Ferrara, Judy Qiu Parallel Clustering of High-Dimensional Social Media Data Streams Technical Report November 8 2014. Presented at CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China

  231. Shrideep Pallickara and Geoffrey Fox Routing events using the Grid Event Service Technical Report

  232. Saliya Ekanayake and Geoffrey Fox Parallel Java Performance with additional new results one and two Technical Report October 12 2014

  233. Tak Lon Wu, Abhilash Koppula, Judy Qiu Integrating Pig with Harp to Support Iterative Applications with Fast Cache and Customized Communication 5th International Workshop on Data Intensive Computing in the Clouds (DataCloud) 2014

  234. Geoffrey C.Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Original Paper for 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday Annapolis October 14 2014 DOI

  235. Yang Ruan Study of Conjugate Gradient in WDA-SMACOF and Fixed Points Technical Report August 22 2014

  236. Yang Ruan Displaying Phylogenetic Tree with 3D Clustering Technical Report August 22 2014

  237. Geoffrey Fox and Wo Chang Big Data Use Cases and Requirements to be published in proceedings of 1st Big Data Interoperability Framework Workshop: Building Robust Big Data Ecosystem ISO/IEC JTC 1 Study Group on Big Data March 18 - 21, 2014 San Diego Supercomputer Center, San Diego, CA, USA

  238. Judy Qiu, Shantenu Jha, Andre Luckow, Geoffrey C.Fox Towards HPC-ABDS: An Initial High-Performance BigData Stack to be published in proceedings of 1st Big Data Interoperability Framework Workshop: Building Robust Big Data Ecosystem ISO/IEC JTC 1 Study Group on Big Data March 18 - 21, 2014 San Diego Supercomputer Center, San Diego, CA, USA

  239. Geoffrey C Fox, Judy Qiu, and Shantenu Jha Integrating the Apache Big Data Stack with HPC for Big Data in AGU Fall Meeting , Session IN025: Leveraging Enabling Technologies and Architectures to enable Data Intensive Science - Abstract of Invited Talk. August 7, 2014. San Francisco, 15-19 December 2014

  240. Andrew J. Younge, John Paul Walters, Geoffrey C. Fox High Performance Molecular Dynamics in Cloud Infrastructure with SR-IOV and GPUDirect Poster August 7 2014

  241. Natiele Bohn, Oliver Lewis, Gregor von Laszewski, Fugang Wang Cloudmesh Resource Reservation Poster at Indiana University Summer REU Program July 25 2014

  242. Jefferson Ridgeway, Ifeanyi Rowland Onyenweaku, Gregor von Laszewski, Fugang Wang A Project Management Framework for Cloud and HPC Resource Providers Poster at Indiana University Summer REU Program July 25 2014

  243. Leif Christiansen, Supun Kamburugamuva, Geoffrey Fox Building a Cloud Control Framework for the TurtleBot Poster at Indiana University Summer REU Program July 25 2014

  244. Lorander Saggu, Saliya Ekanayake, Yang Ruan, Gregor von Laszewski, Geoffrey Fox Genomic Sequence Analysis Automation Poster at Indiana University Summer REU Program July 25 2014

  245. Nigel Pugh, Tori Wilbon, Saliya Ekanayake Evaluating the Performance of MPI Java in FutureGrid Poster at Indiana University Summer REU Program July 25 2014

  246. Tatyana Mathews, Scott McCaulay Apache Big Data Stack Poster at Indiana University Summer REU Program July 25 2014

  247. Geoffrey C.Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Technical Report July 20 2014

  248. Gregor von Laszewski and Geoffrey C. Fox The FutureGrid Testbed for Big Data Book Chapter in Cloud Computing for Data-Intensive Applications, editors Xiaolin Li and Judy Qiu Springer Verlag New York 2014 10.1007/978-1-4939-1905-5 ISBN 978-1-4939-1904-8

  249. Geoffrey Fox Experience with Online Teaching June 10 2014 Internal memo. Slideshare

  250. Geoffrey Fox Big Data at the Intersection of Clouds and HPC The 2014 High Performance Computing "c0"> Conference (HPCS 2014) July 21 - 25, 2014 Bologna, Italy

  251. Stefan Lee Jerome Mitchell David J. Crandall and Geoffrey C. Fox ESTIMATING BEDROCK AND SURFACE LAYER BOUNDARIES AND CONFIDENCE INTERVALS IN ICE SHEET RADAR IMAGERY USING MCMC The International Conference on Image Processing (ICIP) Paris France October 27-29 2014

  252. Yang Ruan Scalable and Robust Clustering and Visualization for Large-scale Bioinformatics Data Indiana University PhD Thesis Abstract June 9 2014

  253. John Paul Walters, Andrew J. Younge, Dong-In Kang, Ke-Thia Yao, Mikyung Kang, Stephen P. Crago, and Geoffrey C. Fox GPU-Passthrough Performance: A Comparison of KVM, Xen, VMWare ESXi, and LXC for CUDA and OpenCL Applications Applications "c0"> Conference on Cloud Computing June 27 - July 2, 2014, Alaska, USA

  254. Gregor von Laszewski, Fugang Wang, Hyungro Lee, Heng Chen and Geoffrey C. Fox, Accessing Multiple Clouds with Cloudmesh BigSystem 2014 workshop at The ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)

  255. Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schütte, James D. Bever, Haixu Tang and Geoffrey Fox Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions FIRST INTERNATIONAL WORKSHOP ON CLOUD FOR BIO (Bio 2014) to be held as part of CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  256. Xiaoming Gao and Judy Qiu Supporting Queries and Analyses of Large-Scale Social Media Data with Customizable and Scalable Indexing Techniquesover NoSQL Databases PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  257. Andrew Younge and Geoffrey Fox Advanced Virtualization Techniques for High Performance Cloud Cyberinfrastructure PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  258. Thilina Gunarathne, Judy Qiu and Dennis Gannon Towards a Collective Layer in the Big Data Stack CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  259. Andrew J. Younge, John Paul Walters, Stephen Crago, Geoffrey C. Fox Evaluating GPU Passthrough in Xen for High Performance Cloud Computing High-Performance Grid and Cloud Computing Workshop May 19, 2014, Phoenix, Arizona, USA in conjunction with International Parallel and Distributed Processing Symposium - IPDPS 2014

  260. Bingjing Zhang and Yang Ruan Harp: Collective Communication on Hadoop Internal memo June 2 2014

  261. Sherif Abdelhamid, Maksudul Alam, Richard Alo, Shaikh Arifuzzaman, Pete Beckman, Tirtha Bhattacharjee, Hasanuzzaman Bhuiyan, Keith Bisset, Stephen Eubank, Albert C. Esterline, Edward A. Fox, Geoffrey C. Fox, S.M.Shamimul Hasan, Harshal Hayatnagarkar, Maleq Khan, Chris J. Kuhlman, Madhav V. Marathe, Natarajan Meghanathan, Henning S. Mortveit, Judy Qiu, S.S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Samarth Swarup, Anil Kumar S. Vullikanti, and Tak-Lon Wu CINET 2.0: A CyberInfrastructure for Network Science May 19 2014 Technical Report published in The 10th IEEE International Conference on e-Science Guarujá, SP, Brazil 20th – 24th October 2014

  262. Jahanzeb Maqbool, Sangyoon Oh, Geoffrey C. Fox Evaluating Energy Efficient HPC Clusters for Scientific Workloads Internal memo May 14 2014

  263. JUSTIN M DELOATCH Utilizing HUBzero to Create and Test an Educational Hub from CReSIS Educational Data Elizabeth City State University Masters Thesis April 17 2014

  264. Mashar Cenk Gencal Summary of Robust Scalable Visualized Clustering in Vector and non Vector Semimetric Spaces Independent Study Indiana University April 15 2014

  265. Sun Zhanquan, Geoffrey Fox, Gu Weidong A Parallel Clustering Method Combined Information Bottleneck Theory and Centroid-based Clustering Internal Report April 8 2014, The Journal of Supercomputing 69(1):452-467 · July 2014 DOI

  266. Feng Xie, Zhen Chen, Jiaxing Shang, Geoffrey C. Fox Grey forecast model for accurate recommendation in presence of data sparsity and correlation Knowledge-Based Systems (Elsevier) to be published April 5 2014

  267. Fugang Wang, Gregor von Laszewski, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon and Steven M. Gallo Towards a Scientific Impact Measuring Framework for Large Computing Facilities - a Case Study on XSEDE Accelerating Discovery in Scholarly Research XSEDE14 All Hands Meeting July 13-18 Atlanta

  268. Richard L. Moore, Chaitan Baru, Diane Baxter, Geoffrey C. Fox, Amit Majumdar, Phillip Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Shawn Strande, Mahidhar Tatineni, Richard P. Wagner, Nancy Wilkins-Diehr, Michael L. Norman Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science Technology Track XSEDE14 All Hands Meeting July 13-18 Atlanta

  269. Hyungro Lee, Gregor von Laszewski, Fugang Wang and Geoffrey Fox Towards Understanding Cloud Usage through Resource Allocation Analysis on XSEDE Technical Report March 25 2014

  270. Geoffrey Fox and Ilkay Altintas Big Data Use Cases: Progress and Futures Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  271. Shantenu Jha, Judy Qiu and Geoffrey Fox HPBDS: The Case for an Integrating Apache Big Data Stack with HPC Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  272. Geoffrey Fox, Judy Qiu, Shantenu Jha Understanding Big Data Applications and Architectures Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  273. Minh Duc Nguyen, Min Su Lee, Sangyoon Oh and Geoffrey C. Fox SPARQL Query Optimization for Structural Indexed RDF Data Technical Report March 11 2014

  274. Saliya Ekanayake Evaluation of Java Message Passing in High Performance Data Analytics Technical Report March 9 2014

  275. Shantenu Jha, Judy Qiu, Andre Luckow, Pradeep Mantha, and Geoffrey C.Fox, A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures Preprint March 6 2014 to be published in Application and Experience track of 3rd International Congress on Big Data June 27 - July 2, 2014, Anchorage, Alaska, USA. Another unpublished version

  276. Ahmet F. Mustacoglu and Geoffrey Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report March 5 2014

  277. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical report February 21 2014

  278. Geoffrey Fox, Judy Qiu and Shantenu Jha High Performance High Functionality Big Data Software Stack or local white paper, International Workshop on Extreme Scale Scientific Computing (Big Data and Extreme Computing (BDEC)) Fukuoka Japan February 27 2014

  279. Jerome Mitchell PhD Qualifying paper Near surface layers and global climate change with its implications for sea level rise February 19 2014

  280. Jerome Mitchell PhD Qualifying paper Global optimization techniques, specifically simulated annealing, genetic algorithms, and tabu search February 17 2014

  281. Jerome Mitchell PhD Qualifying paper Research in Layer Identification February 17 2014

  282. Geoffrey Fox FutureGrid Summary January 31 2014

  283. Marco Battaglieri, Bill Briscoe, Su-Urk Chung, Geoffrey Fox, Bernhard Ketzer, Vincent Mathieu and Adam Szczepaniak Analysis Tools for Next Generation Hadron Spectroscopy Experiments February 13 2014 summary of ATHOS 2013 Kloster Seon, Germany, May 20-24, 2013 and ATHOS 2012 International Workshop on NEW PARTIAL WAVE ANALYSIS TOOLS FOR NEXT GENERATION HADRON SPECTROSCOPY EXPERIMENTS, June 20-23, 2012

  284. Judy Qiu, Geoffrey Fox Community MOOC's for Computing Technologies and Applications Report on SC13 Birds of a Feather November 20 2013

  285. Thilina Gunarathne, Thomas Wiggins, Judy Qiu Collective Communication Patterns for Iterative MapReduce Technical Report October 11 2013

  286. Bingjing Zhang and Judy Qiu Harp project Summary Technical Report January 12 2014

  287. Xiaoming Gao Investigation and Comparison of Distributed NoSQL Database Systems Technical Report December 21 2013

  288. TAK LON (Stephen) WU, Thomas Wiggins, Judy Qiu CINET Collaboration Report October 13 2013

  289. Supun Kamburugamuve Survey of Apache Big Data Stack Technical report December 19 2013. This motivated the ABDS (Apache Big Data Stack) Kaleidoscope

  290. Supun Kamburugamuve Survey of Distributed Stream Processing for Large Stream Sources Technical report December 19 2013

  291. Supun Kamburugamuve Survey of Streaming Data AlgorithmsSurvey of Streaming Data Algorithms Technical report December 19 2013

  292. Xiaoming Gao and Judy Qiu Supporting End-to-End Social Media Data Analysis with the IndexedHBase Platform Invited talk at 6th Workshop on Many-Task Computing on Clouds, Grids, and Supercomputers (MTAGS) 2013, November 17 2013 at SC13

  293. E. Kolker and others including Geoffrey Fox, "Towards more transparent and reproducible omics studies through a common metadata checklist and data publications", Big Data journal to be published, December 2013

  294. Thilina Gunarathne, Judy Qiu and Dennis Gannon Towards a Collective Layer in the Big Data Stack Technical Report November 18 2013

  295. Zhanquan Sun and Geoffrey Fox Traffic Flow Forecasting Based on Combination of Multidimensional Scaling and SVM International Journal of Intelligent Transportation Systems Research November 2013 DOI

  296. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical Report November 18 2013

  297. Sanghyuk Park, Jai-Hoon Kim and Geoffrey Fox, Effective Real-Time Scheduling Algorithms for Cyber Physical Systems Society , Future Generation Computing Systems 30 October 2013 DOI

  298. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a MapCollective Programming Model Technical Report October 27 2013

  299. Yang Ruan and Geoffrey Fox A Robust and Scalable Solution for Interpolative Multidimensional Scaling with Weighting 9th International conference on e-Science 22-25 October 2013 ( Best Student Paper) DOI

  300. Thilina Gunarathne, Thomas Wiggins, Judy Qiu Collective Communication Patterns for Iterative MapReduce Report to Microsoft on Azure use October 11 2013

  301. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical Report October 7 2013

  302. TAK LON (Stephen) WU, Thomas Wiggins, Judy Qiu CINET Collaboration Report Technical Report October 6 2013

  303. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a Map-Collective Programming Model Poster at ACM Symposium on Cloud Computing 2013 Santa Clara CA October 1-3 2013

  304. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, Maryam Rahnemoonfar and John D. Paden A Semi-Automatic Approach for Estimating Bedrock and Surface Layers from Multichannel Coherent Radar Depth Sounder Imagery SPIE Remote Sensing Conference 23 - 26 September 2013 in Dresden, Germany, in Proc. SPIE 8892, Image and Signal Processing for Remote Sensing XIX. October 17, 2013: Vol. 8892. pages. 88921E-88921E-6. DOI .

  305. Hui Li, Geoffrey Fox, Gregor von Laszewski, Arun Chauhan Co-processing SPMD computation on CPUs and GPUs cluster IEEE Cluster Conference Indianapolis September 23-27 2013 DOI

  306. Andrew J. Younge, John Paul Walters, Steve Crago, Geoffrey C. Fox Enabling High Performance Computing in Cloud Infrastructure using Virtualized GPUs Technical Report September 24 2013

  307. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a Map-Collective Programming Model Technical Report September 3 2013

  308. Xiaoming Gao, Evan Roth, Karissa McKelvey, Clayton Davis, Andrew Younge, Emilio Ferrara, Filippo Menczer, Judy Qiu Supporting a Social Media Observatory with Customizable Index Structures - Architecture and Performance Technical Report September 3 2013, Book chapter to appear in Cloud Computing for Data Intensive Applications, to be published by Springer Publisher, 2014

  309. Ilya Baldin, José Fortes, Ian Foster, Geoffrey Fox Big Data Grand Challenge for Terabit Networks White paper for OSA Incubator and NSF Workshop on Scaling Terabit Networks: Breaking Through Capacity Barriers and Lowering Cost with New Architectures and Technologies, August 16 2013

  310. Geoffrey Fox FutureGrid Sumnmary Technical Report August 16 2013

  311. Geoffrey Fox Minutes of 2020-2025 Scientific Computing Environments (Distributed Computing in an Exascale era) meeting at NITRD MAGIC meeting August 7 2013

  312. Geoffrey Fox, Judy Qiu Community MOOC's for Computing Technologies and Applications Accepted Proposal for SC13 Birds of a Feather July 31 2013

  313. Xiaoming Gao and Judy Qiu Efficient Cloud Storage Solutions for Data-Intensive Scientific Applications Technical Report July 31 2013

  314. Bingying Zhang, Judy Qiu High Performance Clustering of Social Images in a MapCollective Programming Model Technical Report July 2 2013

  315. Judy Qiu, Ian Foster, Carole Goble Editorial for Emerging Computational Methods for the Life Sciences Workshop Special Issue 2012 June 29 2013 To be published in Concurrency" li-bullet-0"> Geoffrey Fox , D. R. Mani, Saumyadipta Pyne Parallel Deterministic Annealing Clustering and its Application to LC-MS Data Analysis Proceedings of 2013 IEEE International Conference on Big Data October 6-9, 2013, Santa Clara, CA, USA, Technical Report June 23 2013 DOI

  316. Geoffrey Fox , D. R. Mani, Saumyadipta Pyne Detailed Results of Evaluation of DAVS(c) Deterministic Annealing Clustering and its Application to LC-MS Data Analysis Technical Report June 22 2013

  317. Tak-Lon (Stephen) Wu salsaDPI: a dynamic provisioning interface for IaaS cloud Technical Report June 25 2013

  318. Tak-Lon (Stephen) Wu MapReduce and Data Intensive Applications Technical Report June 25 2013

  319. Tak-Lon (Stephen) Wu An Overview of Present NoSQL Solutions and Features Technical Report June 25 2013

  320. Ahmet Fatih Mustacoglu, Geoffrey Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report April 2013

  321. Yang Ruan, Geoffrey Fox A Robust and Scalable Solution for Interpolative Multidimensional Scaling With Weighting Proceeeding of eScience2013, the 2013 IEEE 9th International Conference on e-Science, 23-25, October, 2013, Beijing, China

  322. Jay Parker, Andrea Donnellan, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, Jun Wang, Yu Ma Advantages to Geoscience and Disaster Response from the QuakeSim Implementation of Interferometric Radar Maps in a GIS Database System Technical Report May 24 2013 published in Pure and Applied Geophysics July 2014 DOI

  323. Geoffrey Fox Robust Scalable Visualized Clustering in Vector and non Vector Semimetric Spaces Parallel Process. Lett., 23, 1340006 (2013) [15 pages] DOI: 10.1142/S0129626413400069

  324. Judy Qiu and Bingjing Zhang Clustering Social Images with MapReduce and High Performance Collective Communication To be published in Proceedings of HPC 2012 Conference at Cetraro, Italy June 28 2012

  325. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden A SEMI-AUTOMATIC APPROACH FOR ESTIMATING NEAR SURFACE INTERNAL LAYERS FROM SNOW RADAR IMAGERY May 15 2013 paper at IGARSS 2013 Sunday 21 - Friday 26 July 2013 IEEE International Geoscience and Remote Sensing Symposium Melbourne, Australia "Building a Sustainable Earth through Remote Sensing"

  326. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden A Survey of Techniques for Detecting Layers in Polar Radar Imagery Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  327. Maryam Rahnemoonfar, Geoffrey Fox Ice Layer Detection from RADAR Depth Sounder Data using Novel Approach based on theory of Electrostatics Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  328. David J. Crandall, Geoffrey C. Fox AUTOMATIC IDENTIFICATION OF ICE LAYERS IN RADAR ECHOGRAMS Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  329. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe To be published in Concurrency"c0"> ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands, January 2013 DOI

  330. Geoffrey Fox Distributed Data and Software Defined Systems White Paper April 20 2013 BDEC Big Data and Extreme-Scale Computing Charleston April 30 to May 01 Renaissance Charleston Historic District Hotel

  331. Geoffrey Fox, Jose Fortes, Andrew Grimshaw, Kate Keahey, Warren Smith FutureGrid: An Experimental High -Performance Test-bed April 19 2013 Birds of a Feather submission to XSEDE13 : Gateway to Discovery July 22-25 2013 Marriott Marquis and Marina San Diego

  332. Geoffrey Fox Collaboration in the Cloud and Online Education Environments April 15 2013 Abstract of Invited Talk at The 2013 International Conference on Collaboration Technologies and Systems (CTS 2013) May 20-24, 2013 The Sheraton San Diego Hotel and Marina San Diego, California, USA

  333. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden An Approach to Estimating Bedrock and Surfaces Layers in Polar Radar Imagery April 1 2013 Abstract for SPIE Remote Sensing Meeting 23 - 26 September 2013 Internationales Congress Center Dresden, Germany

  334. Ilia Baldine, Jeff Chase, Geoffrey Fox , Gregor von Laszewski Federating FutureGrid and GENI White paper March 25 2013

  335. Hui Li, Geoffrey Fox, Gregor Laszewski, Judy Qiu Scalable Data Clustering Using Fermi GPUs on FutureGrid with Application Details Technical Report April 6 2013

  336. Hui Li, Geoffrey Fox, Gregor Laszewski, Judy Qiu Memo for GlobalReductions Study Technical Report April 5 2013

  337. Hui Li, Geoffrey Fox, Gregor Laszewski, Zhenhua Guo, Judy Qiu Co-processing SPMD Computation on GPUs and CPUs on Shared Memory System Technical Report January 18 2013

  338. Geoffrey Fox and Gregor von Laszewski High Performance Data Analytics Ecosystem A Proposed PTI Megaproject February 7 2013

  339. Geoffrey Fox (Indiana University, USA), Tony Hey (Microsoft Research, USA) and Anne Trefethen (Oxford University, UK) Where does all the data come from? Book Chapter in "Data Intensive Science" edited by Terence Critchlow and Kerstin Kleese Van Dam, June 3, 2013 by Chapman and Hall/CRC.

  340. Yuduo Zhou Large Scale Distributed File System Survey Technical Report January 20 2013

  341. Saliya Ekanayake Study of Biological Sequence Clustering Technical Report January 18 2013

  342. Saliya Ekanayake Survey on High Productivity Computing Systems (HPCS) Languages Technical Report January 18 2013

  343. Saliya Ekanayake Sequence Clustering Tools Technical Report January 18 2013

  344. Xiaoming Gao and Judy Qiu Scalable Inverted Indexing on NoSQL Table Storage Technical Report January 21 2013

  345. David J. Crandall, and Geoffrey C. Fox AUTOMATIC IDENTIFICATION OF ICE LAYERS IN RADAR ECHOGRAMS January 13 2013 Abstract at IGARSS 2013 Sunday 21 - Friday 26 July 2013 IEEE International Geoscience and Remote Sensing Symposium Melbourne, Australia "Building a Sustainable Earth through Remote Sensing"

  346. Geoffrey Fox and Dennis Gannon Using Clouds for Technical Computing in Proceedings of HPC 2012 Conference at Cetraro, Italy June 28 2012. Chapter in "Cloud Computing and Big Data", C. Catlett, W. Gentzsch, L. Grandinetti, G.R. Joubert, and J.L. Vazquez-Poletti, Editors. 2013, IOS Press: Cetraro, Italy.

  347. Judy Qiu and Bingjing Zhang Mammoth Data in the Cloud: Clustering Social Images Technical Report January 2 2013. Book chapter in Cloud Computing and Big Data , IOS Press, 2013, edited by Catlett, C. , Gentzsch, W., Grandinetti, L., Joubert, G.R., Vazquez-Poletti, J.L.. ISBN 978-1-61499-321-6.

  348. Shrideep Pallickara and Geoffrey Fox Recent Work in Utility and Cloud Computing Editorial of Future Generation Computer Systems Special Issue. Future Generation Computer Systems, 6//, 2013. 29(4): p. 986-987. DOI .

  349. John Rundle and Geoffrey Fox, Computational Earthquake Science, Editorial for Computing in Science and Engineering Special Issue 14(5): p. 7-9. DOI

  350. Andrea Donnellan, Jay Parker, Margaret Glasscoe, Eric De Jong, Marlon Pierce, Geoffrey Fox, Dennis McLeod, John Rundle, Davis Lisa Grant Ludwig A Distributed Approach to Computational Earthquake Science: Opportunities and Challenges April 11 2012, Computing in Science and Engineering Vol. 14(5): p. 31-42. DOI

  351. Jun Wang, Marlon E. Pierce, Yu Ma, Geoffrey C. Fox, Andrea Donnellan, Jay W. Parker, Margaret Glasscoe Using Service-Based Geographical Information System to Support Earthquake Research and Disaster Response April 5 2012, Computing in Science and Engineering 14(5): p. 21-30. DOI

  352. Shrideep Pallickara and Geoffrey Fox Enabling Hierarchical Dissemination of Streams in Content Distribution Networks Technical report August 15 2008, Concurrency and Computation: Practice and Experience. Vol. 24 (14), pp. 1594-1606. 2012.

  353. Geoffrey Fox Robust Scalable Visualized Clustering in Metric and non-Metric Spaces Submitted for Publication December 12 2012

  354. Geoffrey Fox Large scale data analytics on clouds keynote in CloudDB '12 Proceedings of the fourth international workshop on Cloud data management Pages 21-24 October 29 2012 Sheraton Maui DOI

  355. Judy Qiu, Ian Foster, Ronald Taylor Editorial for Special Issue for Emerging Computational Methods for the Life Sciences Workshop 2011 Concurrency and Computation:Practice and Experience to be published 2013

  356. Geoffrey Fox White Paper on Clouds and the Internet of Things (Sensor Clouds) November 25 2012

  357. Jonathan Klinginsmith Reproducibility and Scalability in Experimentation through Cloud Computing Technologies Doctoral Showcase November 14 2012 SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  358. Hyungro Lee; Youngik Yang; Heejoon Chae; Seungyoon Nam; Donghoon Choi; Tangchaisin, P.; Herath, C.; Marru, S.; Nephew, K.P.; Sun Kim; , BioVLAB-MMIA: A Cloud Environment for microRNA and mRNA Integrated Analysis (MMIA) on Amazon EC2 , NanoBioscience, IEEE Transactions on , vol.11, no.3, pp.266-272, Sept. 2012 DOI

  359. Saliya Ekanayake Survey on High Productivity Computing Systems (HPCS) Languages Technical report 13 November 2012

  360. Andrea Donnellan, Margaret Glasscoe, Jay W. Parker, Robert Granat, Marlon Pierce, Jun Wang, Geoffrey Fox, Dennis McLeod, John Rundle, Lisa Grant Ludwig Integrating Remotely Sensed and Ground Observations for Modeling, Analysis, and Decision Support 2013 IEEE Aerospace Conference Big Sky Montana Mar 2-9 2013

  361. Geoffrey Fox Cloud Value Proposition for Science and Engineering Technical report October 26 2012

  362. Manish Parashar, Geoffrey Fox, Kate Keahey Integrating Clouds and Cyberinfrastructure for CDS and E: Research Challenges Technical report October 26 2012

  363. Jong Youl Choi, Mohammad H. Abbasi, David Pugmire, Scott Klasky, Judy Qiu, Geoffrey Fox Mining Hidden Mixture Context With ADIOS-P To Improve Predictive Pre-fetcher Accuracy 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  364. Geoffrey Fox, Marlon Pierce, Gregor von Laszewski Cloud Computing and QuakeSim APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  365. Geoffrey Fox Radar Informatics APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  366. Jay Parker, Andrea Donnellan, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, Jun Wang, and Yu Ma Advantages to Geoscience and Disaster Response from the QuakeSim Implementation of Interferometric Radar Maps in the GeoServer GIS System APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  367. Lisa Grant Ludwig , Dennis McLeod, Andrea Donnellan, Jay Parker, Rami Al-Ghanmi, Marlon Pierce, and Geoffrey Fox Fault Data and Fault Model Provenance Issues and Challenges for QuakeSim APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  368. Manish Parashar and Geoffrey Fox Integrating Clouds and Cyberinfrastructure for CDS and E: Research Challenges Technical Report 30 August 2012

  369. Jonathan Klinginsmith, Judy Qiu Using Cloud Computing for Scalable, Reproducible Experimentation Technical Report 22 August 2012

  370. Robert Grossman, Michael Kozuch, Gregor von Laszewski, Rick McGeer, Dejan Milojicic Frontispiece FederatedClouds '12 Proceedings of the 2012 workshop on Cloud services, federation, and the 8th open cirrus summit Pages 25-32 September 21 2012

  371. Gregor von Laszewski, Hyungro Lee, Javier Diaz, Fugang Wang, Koji Tanaka, Shubhada Karavinkoppa, Geoffrey C. Fox , Tom Furlani Design of an Accounting and Metric-based Cloud-shifting and Cloud-seeding framework for Federated Clouds and Bare-metal Environments FederatedClouds '12 Proceedings of the 2012 workshop on Cloud services, federation, and the 8th open cirrus summit Pages 25-32 September 21 2012

  372. Hui Li, Geoffrey Fox, Judy Qiu Performance Model for Parallel Matrix Multiplication with Dryad: Dataflow Graph Runtime 2012 International Symposium on Big Data and MapReduce (BigDataMR2012) 01-03 November 2012, Xiangtan, Hunan, China

  373. Geoffrey Fox FutureGrid Annual Summary August 2012

  374. Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey Fox DACIDR: Deterministic Annealed Clustering with Interpolative Dimension Reduction using a Large Collection of 16S rRNA Sequences ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB) Orlando Florida October 7-10 2012

  375. Feng Xie, Zhen Chen, Jiaxing Shang and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation in Presence of Data Sparsity and Correlation The 2nd International Conference on Social Computing and its Applications (SCA2012), 1-3 November 2012, Xiangtan, Hunan, China

  376. Jerome E. Mitchell, David Crandall, Geoffrey Fox, and John Paden, Automatic Near Surface Estimation from Radar Imagery Abstract 2012 AGU Fall Meeting 3-7 December 2012, at the Moscone Convention Center, San Francisco, California

  377. Andrew J. Younge, John Paul Walters, Jinwoo Suh, Dong-In D. Kang, Youngsam Park, Stephen P. Crago, Geoffrey C. Fox Towards a High Performance Virtualized IaaS Deployment Poster August 1 2012

  378. Andrew J. Younge and Geoffrey C. Fox Bridging the Gap Between HPC and IaaS Technical Report August 1 2012

  379. Geoffrey Fox, José A.B. Fortes Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing Technical Report July 31 2012 Birds of a Feather on November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  380. Manish Parashar, Geoffrey Fox, Kate Keahey Science-as-a-Service: Exploring Clouds for Computational and Data-Enabled Science and Engineering Technical Report July 31 2012 Birds of a Feather on November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  381. Linda Hayden, Prasad Gogineni, Geoffrey C Fox, Building capacity in polar sciences Technical Report July 31 2012 in International Innovation digital magazine

  382. Sherif Elmeligy Abdelhamid, Richard Alo, S. M. Arifuzzaman, Pete Beckman, Md Hasanuzzaman Bhuiyan, Keith Bisset, Edward A. Fox, Geoffrey C. Fox, Kevin Hall, S.M.Shamimul Hasan, Anurodh Joshi, Maleq Khan, Chris J. Kuhlman, Spencer Lee, Jonathan P. Leidig, Hemanth Makkapati, Madhav V. Marathe, Henning S. Mortveit, Judy Qiu, S.S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Rajesh Subbiah, Samarth Swarup, Nick Trebon, Anil Vullikanti, and Zhao Zhao CINET: A CyberInfrastructure for Network Science Technical Report July 19 2012 and Proceedings of 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  383. Jong Youl Choi, Mohammad H. Abbasi, David Pugmire, Scott Klasky, Judy Qiu, Geoffrey Fox Mining Hidden Mixture Context With ADIOS-P To Improve Predictive Pre-fetcher Accuracy Technical Report July 19 2012 and Proceedings of 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  384. David J. Crandall, Geoffrey C. Fox, John D. Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models Proceedings of twenty-first conference of the International Association for Pattern Recognition (IAPR), November 11-15, 2012 at the Tsukuba International Congress Center, Tsukuba, Japan, submitted July 16 2012

  385. Gregor von Laszewski, Hyungro Lee, Javier Diaz, Fugang Wang, Koji Tanaka, Shubhada Karavinkoppa, Geoffrey C. Fox, Tom Furlani Design of an Accounting and Metric-based Cloud-shifting and Cloud-seeding framework for Federated Clouds and Bare-metal Environments Technical Report August 20 2012, Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit,September 21, 2012, San Jose, CA (USA)

  386. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Visualization of Large High-Dimensional Data via Interpolation Approach of Multidimensional Scaling Technical Report July 14 2012

  387. Geoffrey C. Fox, Gregor von Laszewski, Javier Diaz, Kate Keahey, Jose Fortes, Renato Figueiredo, Shava Smallen, Warren Smith, and Andrew Grimshaw FutureGrid - a reconfigurable testbed for Cloud, HPC and Grid Computing Chapter in "Contemporary High Performance Computing: From Petascale toward Exascale", editor Jeff Vetter, April 23, 2013 by Chapman and Hall/CRC

  388. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Scalable Parallel Computing on Clouds Using Twister4Azure Iterative MapReduce Future Generation Computer Systems To be published June 19 2012

  389. Geoffrey C. Fox, Siddharth Maini, Barbara Ann O’Leary Social Media Support of Research Technical Report June 9 2012 posted at EarthCube Governance group Ning web site with Interactive Resource

  390. Geoffrey C. Fox, Siddharth Maini, Barbara Ann O’Leary Analysis of EarthCube’s Governance Web Site Technical Report June 8 2012 posted at EarthCube Governance group Ning web site

  391. Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey Fox DACIDR: Deterministic Annealed Clustering with Interpolative Dimension Reduction using Large Collection of 16S rRNA Sequences Technical Report June 7 2012

  392. Yuduo Zhou Migration of Iterative MapReduce Runtime and Application onto Distributed File Systems Technical Report April 30 2012

  393. Feng Xie, Jiaxing Shang, Zhen Chen and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation in Presence of Data Sparsity and Correlation Technical report June 7 2012

  394. Ryan Hartman and Geoffrey Fox DRAFT Sensor Cloud Project Final Report AFRL SBIR Phase 3 Project Indiana University April 23 2012 and a Summary of Clouds

  395. Alex Ho and Geoffrey Fox GRID OF GRIDS FOR INFORMATION MANAGEMENT SBIR final report September 2008

  396. Alex Ho and Geoffrey Fox Advanced Cloud Computing Technology for Sensor Grids SBIR Final Report December 1 2010

  397. Hui Li, Geoffrey Fox, Judy Qiu Performance Model of Parallel Programs with Dryad: Dataflow Graph Runtime Technical Report May 31 2012

  398. Zhenhua Guo, Geoffrey Fox, Mo Zhou, Yang Ruan Improving Resource Utilization in MapReduce Technical Report May 31 2012

  399. Sun Zhanquan, Geoffrey Fox Large Scale Classification Based on Combination of Parallel SVM and Interpolative MDS Technical Report May 29 2012

  400. Sun Zhanquan, Geoffrey Fox A Parallel Clustering Method Study Based on MapReduce Technical Report May 29 2012

  401. Judy Qiu and Geoffrey Fox MapReduce and Data Intensive Applications Prepared May 15 2012 for Birds of a Feather at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago

  402. Geoffrey Fox, Renato Figueiredo, Barbara Ann O'Leary Hosting Cloud, HPC and Grid Educational Activities on FutureGrid Prepared May 15 2012 for Birds of a Feather at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago

  403. Furlani, T. R., M. D. Jones, S. M. Gallo, A. E. Bruno, C. - D. Lu, A. Ghadersohi, R. J. Gentner, A. Patra, R. L. DeLeon, G. von Laszewski, L. Wang, and A. Zimmerman Performance metrics and auditing framework using application kernels for high performance computer systems Concurrency and Computation: Practice and Experience to be published

  404. Sun Zhanquan, Geoffrey Fox Traffic Flow Forecasting Based on Combination of Multidimensional Scaling and SVM Technical Report May 14 2012

  405. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Visualization of Large High-Dimensional Data via Interpolation Approach of Multidimensional Scaling Technical report May 11 2012

  406. Sun Zhanquan, Geoffrey Fox Technical Report Study on Parallel SVM Based on MapReduce Report May 11 2012 Proceedings of PDPTA'12 - The 2012 International Conference on Parallel and Distributed Processing Techniques and Applications July 16-19 Las Vegas NV USA

  407. Gregor von Laszewski, Javier Diaz, Fugang Wang, Geoffrey Fox Comparison of Multiple Cloud Frameworks Technical Report May 6 2012 in Proceedings of IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA

  408. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey Fox Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures Technical Report May 6 2012 in Proceedings of IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA

  409. Bingjing Zhang, Judy Qiu Accelerating Data Transfers In Iterative MapReduce Framework Technical Report May 4 2012

  410. Jerome Mitchell, Judy Qiu, Massimo Canonico, Shantenu Jha, Linda Hadyen, Barbara Ann O’Leary, Renato Figueiredo, Geoffrey Fox FutureGrid Education: Using Case Studies to Develop A Curriculum for Communicating Parallel and Distributed Computing Concepts Presented at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago FutureGrid education: using case studies to develop a curriculum for communicating parallel and distributed computing concepts Jerome E. Mitchell , Judy Qiu , Massimo Canonio , Shantenu Jha , Linda Hayden , Barbara Ann O'Leary , Renato Figueiredo , Geoffrey Fox XSEDE '12 Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond, 2012 frames are not supported

  411. Seung-Hee Bae, Judy Qiu, Geoffrey Fox High Performance Multidimensional Scaling for Large High-Dimensional Data Visualization Technical report April 26 2012

  412. Gabriel Antoniu, Götz Brasche, Shane Canon, Geoffrey Fox Science Clouds Experiences: Sunny, Cloudy or Rainy? Panel at Science Clouds Workshop of ACM HPDC 2012 conference at Delft the Netherlands Science clouds experiences: sunny, cloudy or rainy? Gabriel Antoniu , Götz Brasche , Shane Canon , Geoffrey Fox ScienceCloud '12 Proceedings of the 3rd workshop on Scientific Cloud Computing Date, 2012 frames are not supported

  413. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe Technical Report April 23 2012 for Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands

  414. Yang Ruan, Zhenhua Guo, Yuduo Zhou, Judy Qiu, Geoffrey Fox HyMR: a Hybrid MapReduce Workflow System Technical Report April 23 2012, Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands

  415. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality and Fairness in MapReduce Technical Report April 23 2012 for The Third International Workshop on MapReduce and its Applications ( MAPREDUCE'12) of ACM HPDC 2012 conference at Delft the Netherlands Investigation of data locality and fairness in MapReduce Zhenhua Guo , Geoffrey Fox , Mo Zhou MapReduce '12 Proceedings of third international workshop on MapReduce and its Applications Date, 2012 frames are not supported

  416. Rajarshi Guha, Gary D. Wiggins, David J. Wild, Mu-Hyun Baik, Marlon E. Pierce, and Geoffrey C. Fox Improving usability and accessibility of cheminformatics tools for chemists through cyberinfrastructure and education Technical Report April 18 2007 published in In Silico Biology 11 (2011/2012) 41-60 DOI

  417. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Iterative Statistical Kernels on Contemporary GPUs Technical report April 11 2012, International Journal of Computational Science and Engineering (IJCSE) to be published

  418. Feng Xie, Jiaxing Shang, Zhen Chen and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation to Cope with Data Sparsity and Correlation Technical report April 4 2012

  419. David J. Crandall, Geoffrey C. Fox, John D. Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models Technical Report April 8 2012 submitted for publication

  420. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox Towards Cloud Deployments using FutureGrid Technical Report April 2012

  421. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures Technical Report March 2012

  422. Gilles Fedak, Geoffrey Fox, Gabriel Antoniu, Haiwu He Future of MapReduce for scientific computing Proceedings of the second international workshop on MapReduce and its applications MapReduce '11 Pages 75-76 ACM New York, NY, USA 2011 DOI Future of MapReduce for scientific computing Gilles Fedak , Geoffrey Fox , Gabriel Antoniu , Haiwu He MapReduce '11 Proceedings of the second international workshop on MapReduce and its applications, 2011 frames are not supported

  423. Kate Keahey, Frederic Desprez, Frederic Desprez, Geoffrey Fox, Emmanuel Jeannot, Kate Keahey, Michael Kozuch, David Margery, Pierre Neyron, Lucas Nussbaum, Christian Perez, Olivier Richard, Warren Smith, Jens Vöckler, Gregor von Laszewski Supporting Experimental Computer Science Technical Report March 9 2012 summarizing Support for Experimental Computer Science Workshop at SC11 Seattle November 18 2011

  424. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality and Fairness in MapReduce Technical Report March 4 2012 accepted at The Third International Workshop on MapReduce and its Applications (MAPREDUCE'12) of ACM HPDC 2012 conference at Delft the Netherlands

  425. Geoffrey Fox and Dennis Gannon Programming Paradigms for Technical Computing on Clouds and Supercomputers presented at Cloud Futures 2012: Hot Topics in Research and Education, Berkeley CA May 7-8 2012

  426. Judy Qiu and Thilina Gunarathne Twister4Azure: Parallel Data Analytics on Azure Technical Report February 29 2012

  427. Yang Ruan, Zhenhua Guo, Yuduo Zhou, Judy Qiu, Geoffrey Fox HyMR: a Hybrid MapReduce Workflow System Technical Report February 28 2012

  428. Gregor von Laszewski MapReduce for Scientist using FutureGrid Technical Report February 28 2012

  429. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe Technical Report February 24 2012

  430. Kangseok Kim, Marlon Pierce, Geoffrey Fox Performance of scalable, distributed database system built on multicore systems with deterministic annealing clustering Technical Report February 18 2012

  431. Zhenhua Guo, Geoffrey Fox, and Mo Zhou Improving Resource Utilization in MapReduce Technical Report February 18 2012

  432. Geoffrey C. Fox, Supun Kamburugamuve, Ryan Hartman Architecture and Measured Characteristics of a Cloud Based Internet of Things API Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications (IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems (CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA, Technical Report February 14 2012

  433. Tao Huang, Geoffrey Fox Collaborative Annotation of Real Time Streams on Android-Enabled Devices Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications (IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems (CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA, Technical Report February 14 2012

  434. Ahmet Fatih Mustacoglu, Geoffrey C. Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report February 12 2012

  435. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Scalable Parallel Scientific Computing Using Twister4Azure Technical Report February 11 2012

  436. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Adaptive Interpolation of Multidimensional Scaling International Conference on Computational Science ICCS Omaha Nebraska June 4-6 2012

  437. Zhenhua Guo, Geoffrey Fox Improving MapReduce Performance in Heterogeneous Network Environments and Resource Utilization Technical Report January 29 2012

  438. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Iterative Statistical Kernels on Contemporary GPUs Technical Report January 26 2012

  439. Sidd Maini, Thomas Wiggins, Eric Tsao, Justin Barnet, Geoffrey Fox Building a Culturally Sensitive portal for Indigenous Nations Technical Report January 21 2012

  440. Donnellan, Andrea; Parker, Jay W.; De Jong, Eric; Pierce, Marlon; Fox, Geoffrey; McLeod, Dennis; Rundle, John B.; Grant, Lisa A Distributed Approach to Computational Earthquake Science: Opportunities and Challenges Technical Report January 19 2012

  441. Andrea Donnellan, Geoffrey Fox, Dennis McLeod, Marlon Pierce, and John Rundle OpenQuake Social Networking for EarthCube Letter of Intent for NSF Earthcube activity January 18 2012

  442. Andrea Donnellan, Jay Parker, Robert Granat, Eric De Jong, Shigeru Suzuki, Marlon Pierce and Geoffrey Fox, John Rundle, Dennis McLeod, and Rami Al-Ghanmi, Lisa Grant Ludwig QuakeSim: Integrated Modeling and Analysis of Geologic and Remotely Sensed Data to be presented at 2012 IEEE Aerospace Conference , March 3–10, 2012 Big Sky, Montana with Final Version and DOI

  443. Geoffrey Fox and Dennis Gannon Cloud Programming Paradigms for Technical Computing Applications Technical Report January 17 2012

  444. Jun Wang, Marlon E. Pierce, Yu Ma, Geoffrey C. Fox, Andrea Donnellan, Jay W. Parker, Margaret Glasscoe Using Service-Based Geographical Information System to Support Earthquake Research and Disaster Response Technical Report January 15 2012

  445. Yunhee Kang and Geoffrey Fox Performance Analysis of Twister based MapReduce Applications on Virtualization System in FutureGrid Advanced Science Letters to appear 2012

  446. Jai-Hoon Kim and Geoffrey Fox Real-Time Scheduling in Cyber-Physical Systems Technical Report January 3 2012 for (aborted) Special Issue for 2012 International Conference on Computer and Applications March 30-31, 2012 at Olympic Parktel, Seoul, Korea

  447. Jai-Hoon Kim, Sanghyuk Park, Geoffrey Fox Real-Time Scheduling in Cyber-Physical Systems Abstract Accepted in 2012 International Conference on Computer and Applications March 30-31, 2012 at Olympic Parktel, Seoul, Korea

  448. Jai-Hoon Kim, Kangseok Kim and Geoffrey Fox Analysis for Optimal Degree of Replication updated from Old Version Technical Report January 3 2012 Information Science and Technology Conference IST2012 Shanghai China April 28-30 2012

  449. Thilina Gunarathne, Xiaoming Gao and Judy Qiu Twister4Azure: Data Analytics in the Cloud Technical Report December 30 2011

  450. Lizhe Wang, Gregor von Laszewski, Fang Huang, Jai Dayal, Tom Furlani, Geoffrey Fox Task scheduling with ANN-based temperature prediction in a data center: a simulation-based study Engineering with Computers (2011) 27:381–391 DOI 10.1007/s00366-011-0211-4

  451. Alex Ramirez and Geoffrey Fox, A REPORT OF THE NATIONAL SCIENCE FOUNDATION ADVISORY COMMITTEE FOR CYBERINFRASTRUCTURE: TASK FORCE ON CYBERLEARNING AND WORKFORCE DEVELOPMENT or local version March, 2011.

  452. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP (Revised) Technical report December 14 2011

  453. Geoffrey Fox Deterministic Annealing and Robust Scalable Data mining for the Data Deluge Invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011 Deterministic annealing and robust scalable data mining for the data deluge Geoffrey C. Fox PDAC '11 Proceedings of the 2nd international workshop on Petascal data analytics: challenges and opportunities, 2011 frames are not supported

  454. Judy Qiu Generalizing MapReduce as a Unified Cloud and HPC Runtime invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011

  455. Geoffrey Fox Data Intensive Applications on Clouds Keynote at The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011 Data intensive applications on clouds Geoffrey C. Fox DataCloud-SC '11 Proceedings of the second international workshop on Data intensive computing in the clouds, 2011 frames are not supported

  456. Zhenhua Guo, Geoffrey Fox, Mo Zhou, Investigation of Data Locality in MapReduce CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada, Technical Report November 27 2011

  457. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP Technical report November 15 2011

  458. Geoffrey Fox (Indiana University, USA), Tony Hey (Microsoft Research, USA) and Anne Trefethen (Oxford University, UK) Where does all the data come from? Technical report November 9 2011

  459. Adam Hughes, Yang Ruan, Saliya Ekanayake, Seung-Hee Bae, Qunfeng Dong, Mina Rho, Judy Qiu, Geoffrey Fox Interpolative Multidimensional Scaling Techniques for the Identification of Clusters in Very Large Sequence Sets Special Issue of BMC Bioinformatics for Proceedings of GLBIO Great Lakes Bioinformatics Conference Ohio University Athens Ohio May 2-4 2011 BMC Bioinformatics 2012, 13(Suppl 2):S9 DOI: 10.1186/1471-2105-13-S2-S9

  460. Yunhee Kang, Geoffrey C. Fox, Performance Evaluation of MapReduce applications on Cloud Computing Environment, FutureGrid GDC2011, 2011 Conference on Grid and Distributed Computing December 8 ~ 10, 2011 in Jeju Grand Hotel, Jeju Island, Korea .

  461. Jay W Parker, Andrea Donnellan, Robert A Granat, Gregory A Lyzenga, Margaret T Glasscoe, Dennis McLeod, Rami Al-Ghanmi, Marlon Pierce, Geoffrey Fox, Lisa Grant Ludwig, John Belting Rundle QuakeSim: a Web Service Environment for Productive Investigations with Earth Surface Sensor Data Fall AGU Meeting San Francisco CA December 5-9 2011

  462. Margaret Glasscoe, Ronald Blom, Gerald Bawden, Geoffrey Fox, Marlon Pierce, John Rundle, Jun Wang, Robert Granat, Michael Burl, Yu Ma, Mark Yoder, Michael Sachs, Eric Fielding, Jay Parker, Charles Norton, Greg Lyzenga, Roland Bürgmann E-DECIDER: Earthquake Disaster Decision Support and Response Tools . Development and Experiences Fall AGU Meeting San Francisco CA December 5-9 2011

  463. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Portable Parallel Programming on Cloud and HPC: Scientific Applications of Twister4Azure Technical Report August 4 2011 to appear in proceedings of 4th IEEE/ACM International Conference on Utility and Cloud Computing ( UCC 2011) December 5-7 Melbourne Australia

  464. Javier Diaz, Gregor von Laszewski, Fugang Wang, Andrew J. Younge and Geoffrey Fox FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images 3rd IEEE International Conference CloudCom on Cloud Computing Technology and Science, Athens Greece, November 29 - December 1 2011 with longer version

  465. Beth Plale, Geoffrey Fox, Stacy Kowalczyk, Kavitha Chandrasekar eScience Workflows 9 years Out: Converging on a Vision Technical report November 19 2011

  466. Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew and Sun Kim BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis BIBM 2011, IEEE International Conference on Bioinformatics and Biomedicine 12-15 Nov 2011 , Atlanta, GA

  467. Xiaoming Gao, Vaibhav Nachankar, Judy Qiu Experimenting with Lucene Index on HBase in an HPC Environment HPCDB 2011, the 1st Workshop on High-Performance Computing meets Databases at SC11 November 14 2011

  468. Jong Youl Choi (adviser Geoffrey Fox) Large-scale data visualization for data-intensive and high-dimensional scientific data analysis Doctoral Show case at SC11 Seattle November 15 2011

  469. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu, Geoffrey Fox Design Patterns for Scientific Applications in DryadLINQ CTP The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011 Design patterns for scientific applications in DryadLINQ CTP Hui Li , Yang Ruan , Yuduo Zhou , Judy Qiu , Geoffrey Fox DataCloud-SC '11 Proceedings of the second international workshop on Data intensive computing in the clouds, 2011 frames are not supported

  470. Thilina Gunarathne (adviser Geoffrey Fox) Architectures for Iterative Data Intensive Analysis Computations on Clouds and Heterogeneous Environments Doctoral Show case at SC11 Seattle November 15 2011

  471. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP Technical report November 15 2011

  472. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality in MapReduce Proceedings of CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada, Technical report November 8 2011

  473. Andrea Donnellan, Jay Parker, Geoffrey Fox, Marlon Pierce, Dennis McLeod, John Rundle, Lisa Grant Ludwig, Charles Meertens EarthCube and Earthquake Science submitted to NSF Earthcube activity November 2 2011

  474. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Optimizing OpenCL Kernels for Iterative Statistical Applications on GPUs 2nd International Workshop on GPUs and Scientific Applications (GPUScA 2011), Galveston Island, Texas, USA, October 10, 2011, in conjunction with PACT 2011

  475. Andrea Donnellan, Jay Parker, Scott Hensley, Bruce Bills, Brian Hawkins, Paul Rosen, Yang Zheng, Yunling Lou, John Rundle, Tom Herring, Lisa Grant Ludwig, Marlon Pierce and Geoffrey Fox, Yu Ma, Jun Wang, Dennis McLeod, and Rami Al-Ghanmi, Alessandro Grippo Conjugate Faulting, Stepover, and Inflation Associated 1 with the 2010 Magnitude 7.2 El Mayor-Cucapah Earthquake Observed in UAVSAR and GPS Measurements Submitted to AGU Geochemisty, Geophysics, Geosystems, October 10, 2011

  476. Judy Qiu Editorial for Emerging Computational Methods for the Life Sciences Workshop Special Issue " li-bullet-0"> Geoffrey Fox Editorial for Advanced Theory and Practice for High Performance Computing and Communications Special Issue of Concurrency " li-bullet-0"> Seung-Hee Bae, Judy Qiu, Geoffrey Fox Scalable Dimension Reduction for Large Abstract Data Visualization Poster at IEEE Cluster 2011 at the Hilton Hotel in Austin, TX, and hosted by the Texas Advanced Computing Center September 26-30 2011

  477. Aziz Murtazaev, M.S.; Geoffrey C Fox, Ph.D.; Sangyoon Oh, Ph.D. SciPDFindexer: Distributed Information Retrieval system using MapReduce Technical Report August 18 2011

  478. Alex Ramírez, Geoffrey C. Fox, (task force co-chairs) and Geoffrey Fox (Cyberinfrastructure Workforce Development and Higher Education: Computational and Data-Intensive Science and Engineering working group chair) A REPORT OF THE NATIONAL SCIENCE FOUNDATION ADVISORY COMMITTEE FOR CYBERINFRASTRUCTURE TASK FORCE ON CYBERLEARNING AND WORKFORCE DEVELOPMENT Final Report March 2011

  479. Hui Li, Ruan Yang, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION Draft Technical Report July 31 2011

  480. Beth Plale, Geoffrey Fox, Stacy Kowalczyk, Kavitha Chandrasekar, Bina Bhashar State of Workflow Systems for eScience Draft Technical Report June 28 2011

  481. FutureGrid from User’s Perspective, Geoffrey Fox; How to Access FutureGrid, Gregor von Laszewski; HPC on FutureGrid, Warren Smith; Cloud Computing on FutureGrid, Kate Keahey; Training, Education and Outreach, Renato Figueiredo; Experimental Framework Support, Warren Smith; contained in FutureGrid: What an Experimental Infrastructure Can Do for You FutureGrid Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 20 2011

  482. Geoffrey Fox MapReduce TG11 BOF MapReduce Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  483. Renato Figueiredo Panoat Chuchaisri, David Wolinsky Educational Virtual Clusters for Ondemand MPI/Hadoop/Condor in FutureGrid presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  484. Javier Diaz, Gregor Von Laszewski, Fugang Wang, Geoffrey C Fox Towards Generic FutureGrid Image Management presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011 Towards generic FutureGrid image management Gregor von Laszewski , Javier Diaz , Fugang Wang , Andrew J. Younge , Archit Kulshrestha , Geoffrey Fox TG '11 Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, 2011 frames are not supported

  485. John Bresnahan, Tim Freeman, David Labissoniere, Kate Keahey Managing Appliance Launches in Infrastructure Clouds presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  486. Geoffrey Fox, Gregor von Laszewski, Andrew Grimshaw, Renato Figueiredo, Kate Keahey, Gregory G. Pike, Andrew Younge, FutureGrid Tutorial presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011

  487. Geoffrey Fox, Gregor von Laszewski, Renato Figueiredo FutureGrid Tutorial presented at OGF32 Marriott Salt Lake City July 17 2011

  488. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu Design Patterns for Typical Scientific Applications in DryadLINQ CTP Technical Report July 2 2011

  489. Andrew J. Younge, Robert Henschel, James T. Brown, Gregor von Laszewski, Judy Qiu, Geoffrey C. Fox Analysis of Virtualization Technologies for High Performance Computing Environments Technical report February 15 2011 in Proceedings of The Fourth IEEE International Conference on Cloud Computing (CLOUD 2011) July 4-9, 2011, Washington Marriott, Washington DC, USA updated April 2011 DOI

  490. Judy Qiu, Thilina Gunarathne, Geoffrey Fox Classical and Iterative MapReduce on Azure Abstract to be presented at Cloud Futures 2011 workshop Microsoft Conference Center Building 33 Redmond, Washington United States, June 2–3, 2011

  491. Geoffrey Fox, Alex Ho, and Eddy Chan, Measured Characteristics of FutureGrid Clouds for Scalable Collaborative Sensor-Centric Grid Applications IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.

  492. Apu Kapadia, Steven Myers, XiaoFeng Wang and Geoffrey Fox Toward Securing Sensor Clouds IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.

  493. Yuan Luo, Zhenhua Guo, Yiming Sun, Beth Plale, Judy Qiu, Wilfred Li A Hierarchical Framework for Cross-Domain MapReduce Execution Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2011 of ACM HPDC 2011 conference

  494. Zhenhua Guo, Marlon Pierce, Geoffrey Fox, Mo Zhou Automatic Task Re-organization in MapReduce Technical report May 10 2011 Proceedings of IEEE Cluster 2011 at the Hilton Hotel in Austin, TX, and hosted by the Texas Advanced Computing Center September 26-30 2011

  495. Javier Diaz, Gregor von Laszewski, Fugang Wang, Andrew J. Younge and Geoffrey Fox FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images Technical report May 10 2011 submitted for publication

  496. A. J. Younge, V. Periasamy, M. Al-Azdee, W. Hazlewood, and K. Connelly, ScaleMirror: A Pervasive Device to Aid Weight Analysis in Proceedings as Extended Abstract of the 29th International Conference on Human Factors in Computing Systems ( CHI2011). Vancouver, BC: ACM, May 2011

  497. Marlon Pierce, Andrea Donnellan, Margaret Glasscoe, Xiaoming Gao, Jun Wang, Yu Ma QuakeSim and E-Decider Web Development Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  498. Geoffrey Fox, Marlon Pierce, Andrea Donnellan, John Rundle Towards the OpenQuake Infomall Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  499. Margaret Glasscoe, Ronald Blom, Gerald Bawden, Geoffrey Fox, Marlon Pierce, John Rundle, Jun Wang, Robert Granat, Michael Burl, Yu Ma, Mark Yoder, Michael Sachs, Eric Fielding, Jay Parker, Charles Norton, Greg Lyzenga, Roland Bürgmann E-­DECIDER: Experiences Developing Earthquake Disaster Decision Support and Response Tools Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  500. Gregor von Laszewski, Lizhe Wang, Fugang Wang, Geoffrey C. Fox, G. Kumar Mahinthakumar Threat Detection in an Urban Water Distribution Systems with Simulations Conducted in Grids and Clouds The Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, Ajaccio, Corsica, France, 12-15 April 2011

  501. Thilina Gunarathne, Judy Qiu, Geoffrey Fox Iterative MapReduce for Azure Cloud in Proceedings of CCA11 Cloud Computing and Its Applications April 12-13, 2011

  502. J. Diaz, A. J. Younge, G. von Laszewski, F. Wang, and G. C. Fox, Grappling cloud infrastructure services with a generic image repository in Proceedings of CCA11 Cloud Computing and Its Applications April 12-13, 2011

  503. Judy Qiu and Seung-Hee Bae Performance of Windows Multicore Systems on Threading and MPI Technical Report November 26 2010 to be published in Special Issue for FGMMS Frontiers of GPU, Multi- and Many-Core Systems 2010 of Concurrency and Computation: Practice and Experience, Updated March 2011

  504. Thilina Gunarathne, Tak-Lon Wu, Jong Youl Choi, Seung-Hee Bae, Judy Qiu Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications Technical report October 20 2010 to be published in special issue for ECMLS 2010 of Concurrency and Computation: Practice and Experience Updated April 2011

  505. Jong Youl Choi, Seung-Hee Bae, Judy Qiu, Bin Chen, David Wild Browsing Large Scale Cheminformatics Data with Dimension Reduction Technical Report October 16 2010 to be published in special issue for ECMLS 2010 of Concurrency and Computation: Practice and Experience Updated April 2011

  506. Beytullah Yildiz, Geoffrey C. Fox Toward a Modular and Efficient Distribution for Web Service Handlers March 17 2011 To be published in Concurrency and Computation: Practice and Experience

  507. Judy Qiu and Seung-Hee Bae, Performance of Windows Multicore Systems on Threading and MPI to be published in Concurrency and Computation: Practice and Experience Special Issue edited by Shujia Zhou for Frontiers of GPU, Multi- and Many-Core Systems Workshop in The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2010), May 18 2010, Melbourne, Australia

  508. Andrea Donnellan, Jay Parker, Robert Granat, Greg Lyzenga, John Rundle, Dennis McLeod, Rami Al-Ghanmi, Geoffrey Fox, Marlon Pierce QuakeSim Computational Environment Abstract for 2011 Earth Science Technology Forum ESTF2011 June 21-23 in Pasadena, CA.

  509. Geoffrey Fox Computational Sciences and Parallelism in Encyclopedia on Parallel Computing (where title Computational Sciences) edited by David Padua and published by Springer December 28 2010 DOI

  510. Andrew J. Younge, Gregor von Laszewski, Lizhe Wang, and Geoffrey C. Fox Providing a Green Framework for Cloud Data Centers Book Chapter in Handbook on Energy-Aware and Green Computing Ahmad, I. and; Ranka, S. (ed.). Chapman and Hall/CRC Press 2011

  511. Gregor von Laszewski, Geoffrey C. Fox, Fugang Wang, Andrew Younge, Archit Kulshrestha, Warren Smith, Jens Vockler, Renato J. Figueiredo, Jose Fortes, Kate Keahey Design of the FutureGrid Experiment Management Framework GCE Workshop at SC10 November 14 2010 DOI

  512. Sangyoon Oh, Mehmet Aktas and Geoffrey C. Fox Mobile Web Service Architecture Using Context-store KSII TRANSACTIONS ON INTERNET AND INFORMATION SYSTEMS VOL. 4, NO. 5, October 2010 DOI

  513. Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox Multidimensional Scaling by Deterministic Annealing with Iterative Majorization algorithm Proceedings of IEEE eScience 2010 Conference , Brisbane, Australia 7 - 10 December 2010

  514. Andrew J. Younge, James T. Brown, Robert Henschel, Judy Qiu, Geoffrey C. Fox Performance Analysis of HPC Virtualization Technologies within FutureGrid Poster at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  515. Bingjing Zhang, Yang Ruan, Tak-Lon Wu, Judy Qiu, Adam Hughes, Geoffrey Fox Applying Twister to Scientific Applications Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  516. Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, Geoffrey Fox MapReduce in the Clouds for Science Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  517. Xiaoming Gao, Yu Ma, Marlon Pierce, Mike Lowe, Geoffrey Fox Building a Distributed Block Storage System for Cloud Infrastructure Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  518. Chris Hemmerich, Adam Hughes, Yang Ruan, Aaron Buechlein, Judy Qiu, and Geoffrey Fox Map-Reduce Expansion of the ISGA Genomic Analysis Web Server Demonstration at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  519. Judy Qiu, Adam Lee Hughes, Saliya Ekanayake, Thilina Gunarathne, Stephen Tak-lon Wu, Hui Li, Jong Youl Choi, Seung-Hee Bae, Yang Ruan Parallel Applications And Tools For Cloud Computing Environments Demonstration at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  520. Tyler Pace, Shaowen Bardzell and Geoffrey Fox Practice-Centered e-Science: A Practice Turn Perspective on Cyberinfrastructure Design Group 10 Conference, Sanibel Island Florida, November 7-10 2010 Practice-centered e-science: a practice turn perspective on cyberinfrastructure design Tyler Pace , Shaowen Bardzell , Geoffrey Fox GROUP '10 Proceedings of the 16th ACM international conference on Supporting group work, 2010

  521. Craig A. Stewart, Stephen Simms, Beth Plale, Matthew Link, David Y. Hancock, Geoffrey C. Fox What is Cyberinfrastructure? Association for Computing Machinery (ACM) Special Interest Group on University and College Computing Services (SIGUCCS) 2010 Fall Conference , Norfolk Waterside Marriot, October 24 - 27, 2010 Updated What is cyberinfrastructure Craig A. Stewart , Stephen Simms , Beth Plale , Matthew Link , David Y. Hancock , Geoffrey C. Fox SIGUCCS '10 Proceedings of the 38th annual fall conference on SIGUCCS, 2010 frames are not supported

  522. Johan Bollen, Geoffrey Fox, and Prashant Raj Singhal How and where the TeraGrid supercomputing infrastructure benefits science Journal of Informetrics published online October 23 2010 DOI

  523. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Tak-Lon Wu, Yang Ryan, Saliya Ekanayake, Adam Hughes, Geoffrey Fox Hybrid cloud and cluster computing paradigms for life science applications Proceedings of BOSC 2010 to be published in in BMC Bioinformatics October 6 2010

  524. Geoffrey Fox Cloud Architecture for Earthquake Science Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  525. Donnellan, A., Parker, J., Granat, R., Lyzenga, G., Glasscoe, M., Rundle, J., McLeod, D., Al-Ghanmi, R., Pierce, M., Fox, G. and Ludwig, L. G. QuakeSim Earthquake Modeling, Forecasting, and Data Access Tools Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  526. Gao, X., Granat, R., Pierce, M. and Wang, J. Building Services and Web Portal for GPS Time Series Data Analysis Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  527. Pierce, M, Fox, G, Gao, X, Ji, J, Ma, Y, Wang, J, Donnellan, A, Parker, J, Glasscoe, M, Granat, R, Al-Ghanmi, R and McLeod, D QuakeSim Science Gateway Updates Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  528. Judy Qiu Scalable Programming and Algorithms for Data Intensive Life Science Applications Data-Intensive Sciences Workshop NSF September 19-20, 2010 in Seattle

  529. Adam Hughes, Saliya Ekanayake, Judy Qiu, and Geoffrey Fox Service-Oriented Architecture for Biosequence Analysis Workflow Technical Report September 7 2010

  530. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu Cloud Technologies for Bioinformatics Applications August 19 2010 (report), IEEE Transactions on Parallel and Distributed Computing 2011. 22(6): p. 998-1011. DOI

  531. Geoffrey Fox Editorial for Economic Models and Algorithms for Grid Systems Concurrency and Computation: Practice and Experience Special Issue: Economic Models and Algorithms for Grid Systems Volume 22, Issue 14, page 1971, 25 September 2010 DOI

  532. Geoffrey Fox Programming Paradigms White Paper for Data Intensive Research Workshop at NESC Edinburgh March 17 2010

  533. Andrew J. Younge, Gregor von Laszewski, Lizhe Wang, Sonia Lopez-Alarcon, and Warren Carithers. Efficient Resource Management for Cloud Computing Environments . Work in Progress in Green Computing with the IEEE International Green Computing Conference (IGCC), Chicago, IL USA, Aug 15-18, 2010.

  534. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. Provide Virtual Machine Information for Grid Computing, IEEE Trans. on SMC (TSMC), 2010.

  535. Tobias Kurze, Lizhe Wang, Gregor von Laszewski, Jie Tao, Marcel Kunze. Cyberaide onServe: Software as a Service on Production Grids. Proceedings of the 39th International Conference on Parallel Processing (ICPP'10), San Diego, CA, USA, Sep 13-16, 2010.

  536. Beytullah YILDIZ and Geoffrey Fox Measuring Overhead for Distributed Web Service Handler Proceedings of 3rd IEEE International Conference on Computer Science and Information Technology (ICCSIT 2010) 9-11 July 2010 pages 566 - 570 DOI

  537. Marlon E. Pierce, Geoffrey C. Fox, Yu Ma, Jun Wang Cloud Computing and Spatial Cyberinfrastructure Technical Report July 10 2010 updated here on December 1 2010

  538. Andrea Donnellan, Marlon Pierce, Dennis McLeod, Jay Parker, John Rundle, Lisa Grant, Rami Al-Ghanmi, Gepffrey Fox, Robert Granat Integrating GPS, InSAR, and UAVSAR date into the QuakeSim Computational Environment 2011 IEEE Aerospace Conference March 5-12, 2011, Big Sky, Montana

  539. Hui Li Topics on MapReduce Technical report June 27 2010

  540. Geoffrey Fox FutureGrid Platform FGPlatform: Rationale and Possible Directions White Paper June 8 2010

  541. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez A Model for LACCEI: Minority Serving Institutions and CyberInfrastructure Research/ Education Minority Serving Institutions-CyberInfrastructure Empowerment Coalition- MSI-CIEC Proceedings of The Eighth LACCEI Annual Conference for Engineering and Technology Innovation and Development for the Americas Arequipa, Peru on June 1-4 2010.

  542. Judy Qiu, Thilina Gunarathne, Jaliya Ekanayake, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Yang Ryan, Saliya Ekanayake, Tak-Lon Wu, Scott Beason, Adam Hughes, Geoffrey Fox Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications Technical Report April 17 2010 submitted to the 11th Annual Bioinformatics Open Source Conference BOSC 2010

  543. Geoffrey Fox 22nd ACM Algorithms and Application for Grids and Clouds Keynote Talk at Symposium on Parallelism in Algorithms and Architectures Santorini, Greece June 13 - 15, 2010 Algorithms and application for grids and clouds Geoffrey C. Fox SPAA '10 Proceedings of the 22nd ACM symposium on Parallelism in algorithms and architectures, 2010 frames are not supported

  544. Johan Bollen, Geoffrey Fox, Prashant Raj Singhal How and where the TeraGrid supercomputing infrastructure benefits science Technical report May 24 2010

  545. Geoffrey Fox Hybrid Computational Infrastructure Supporting eResearch May 24 2010

  546. Karthik Narayan Muthuraman Using SWARM service for a GRID based Sequence Assembly Bioinformatics Masters Capstone May 23 2010

  547. Geoffrey Fox Polemic on Clouds and MapReduce for Scientific Applications April 27 2010

  548. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. Schedule Distributed Virtual Machines in a Service Oriented Environment In Proceedings of the 24th IEEE International Conference on Advanced Information Networking and Applications (AINA'10). Perth, Australia Apr. 20-23, 2010, Australia

  549. Seung-Hee Bae, Judy Qiu, and Geoffrey C. Fox Multidimensional Scaling by Deterministic Annealing with Iterative Majorization algorithm Technical Report March 31 2010

  550. Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, and Geoffrey Fox, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications March 21 2010. Proceedings of Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Cloud computing paradigms for pleasingly parallel biomedical applications Thilina Gunarathne , Tak-Lon Wu , Judy Qiu , Geoffrey Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  551. Jong Youl Choi, Seung-Hee Bae, Judy Qiu, Geoffrey Fox, Bin Chen, and David Wild, Browsing Large Scale Cheminformatics Data with Dimension Reduction March 21 2010. Proceedings of Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Browsing large scale cheminformatics data with dimension reduction Jong Youl Choi , Seung-Hee Bae , Judy Qiu , Geoffrey Fox , Bin Chen , David Wild HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  552. Jaliya Ekanayake, Hui Li, Bingjing Zhang, Thilina Gunarathne, Seung-Hee Bae, Judy Qiu, Geoffrey Fox Twister: A Runtime for Iterative MapReduce Proceedings of the First International Workshop on MapReduce and its Applications of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Twister: a runtime for iterative MapReduce Jaliya Ekanayake , Hui Li , Bingjing Zhang , Thilina Gunarathne , Seung-Hee Bae , Judy Qiu , Geoffrey Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  553. Rajarshi Guha, Kevin Gilbert, Geoffrey Fox, Marlon Pierce, David Wild, Huapeng Yuan Advances in Cheminformatics Methodologies and Infrastructure to Support the Data Mining of Large, Heterogeneous Chemical Datasets Current Computer-Aided Drug Design, 2010, 6, 50-67

  554. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez CyberInfrastructure Research/ Education Development at Minority Serving Institutions National Model Promoted/ Implemented by MSI-CIEC (Minority Serving Institutions-CyberInfrastructure Empowerment Coalition) Technical Report February 13 2010

  555. Beytullah Yildiz, Geoffrey C. Fox DISTRIBUTED HANDLER ARCHITECTURE Technical Report February 11 2010, 3rd IEEE International Conference on Computer Science and Information Technology (IEEE ICCSIT 2010) Chengdu, China during July 9 - 11, 2010

  556. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu, Geoffrey Fox, Scott Beason, Jong Youl Choi, Yang Ruan, Seung-Hee Bae, Hui Li Applicability of DryadLINQ to Scientific Applications Technical Report January 30 2010

  557. Seung-Hee Bae, Jong Youl Choi, Judy Qiu, Geoffrey Fox Dimension Reduction and Visualization of Large High-dimensional Data via Interpolation Proceedings of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010 Dimension reduction and visualization of large high-dimensional data via interpolation Seung-Hee Bae , Jong Youl Choi , Judy Qiu , Geoffrey C. Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  558. Apu Kapadia, Steven Myers, XiaoFeng Wang and Geoffrey Fox Secure Cloud Computing with Brokered Trusted Sensor Networks Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  559. Ahmet Fatih Mustacoglu and Geoffrey Fox Performance of a Collaborative Framework for Federating Distributed Digital Entities Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  560. Tyler Pace, Shaowen Bardzell, Geoffrey Fox Human-Centered e-Science: A Group-Theoretic Perspective on Cyberinfrastructure Design Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  561. Judy Qiu, Scott Beason, Seung-Hee Bae, Saliya Ekanayake, Geoffrey Fox Performance of Windows Multicore Systems on Threading and MPI to appear in the Proceeding Frontiers of GPU, Multi- and Many-Core Systems Workshop of 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Conference (CCGrid 2010). May 17-20, 2010. Melbourne, Victoria, Australia.

  562. Lizhe Wang, Gregor von Laszewski, Jai Dayal and Fugang Wang Towards Energy Aware Scheduling for Precedence Constrained Parallel Tasks in a Cluster with DVFS to appear in the Proceedings of the The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  563. Jong Youl Choi, Seung-Hee Bae, Xiaohong Qiu and Geoffrey Fox High Performance Dimension Reduction and Visualization for Large High-dimensional Data Analysis to appear in the Proceedings of the The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  564. Judy Qiu, Jong Youl Choi, Seung-Hee Bae, Thilina Gunarathne, Geoffrey Fox, Bin Cao, David Wild Browsing Large Scale Cheminformatics Data with Dimension Reduction Demonstration at 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  565. Jong Youl Choi, Judy Qiu, Marlon Pierce, Geoffrey Fox Generative Topographic Mapping by Deterministic Annealing to appear in the Proceedings of the 10th International conference on Computational Science and Engineering (ICCS 2010), May 31 - Jun 2, 2010. Amsterdam, The Netherlands.

  566. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez "Advancing Computational Science, Visualization and Homeland Security Research/ Education at Minority Serving Institutions National Model Promoted/ Implemented by MSI-CIEC (Minority Serving Institutions-CyberInfrastructure Empowerment Coalition" to appear in the Proceedings of the 10th International conference on Computational Science and Engineering (ICCS 2010), May 31 - Jun 2, 2010. Amsterdam, The Netherlands DOI

  567. Jaliya Ekanayake, Xiaohong Qiu, Thilina Gunarathne, Scott Beason, Geoffrey Fox High Performance Parallel Computing with Clouds and Cloud Technologies to appear as a book chapter to Cloud Computing and Software Services: Theory and Techniques, CRC Press (Taylor and Francis), ISBN-10: 1439803153.

  568. Shrideep Pallickara, Jaliya Ekanayake, and Geoffrey Fox Granules: A Lightweight Runtime for Scalable Computing with Support for Map-Reduce to appear as a book chapter to Cloud Computing and Software Services: Theory and Techniques, CRC Press (Taylor and Francis), ISBN-10: 1439803153.

  569. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu, Cloud Technologies for Bioinformatics Applications submitted to the Journal of IEEE Transactions on Parallel and Distributed Systems. Special Issues of extended versions of selected paper from The 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers ( SC09). Portland, Oregon, November 16, 2009.

  570. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Yang Ruan, Saliya Ekanayake, Stephen Wu, Scott Beason, Geoffrey Fox, Mina Rho, Haixu Tang Data Intensive Computing for Bioinformatics Technical Report December 29 2009 Updated in Data Intensive Distributed Computing, Tevik Kosar, Editor. 2011, IGI Publishers.

  571. Jai Dayal, Casey Rathbone, Lizhe Wang, and Gregor von Laszewski. Towards On Demand IT Service Deployment In Computer Middleware: Theory, Types and Uses, Nova press, 2010.

  572. Lizhe Wang, Gregor von Laszewski, Marcel Kunze, Jie Tao, Jai Dayal. Provide Virtual Distributed Environments for Grid Computing on Demand Advances in Engineering Software. 41(2): 213-219, 2010

  573. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. "Virtual Data System on Distributed Virtual Machines in Computational Grids". Accepted by International Journal of Ad Hoc and Ubiquitous Computing (IJAHUC).

  574. Gregor von Laszewski, Jay Dayal, Lizhe Wang. "eMolst – a documentation flow for distributed health informatics", accepted by Concurrency and Computation: Practice and Experience, Wiley InterScience.

  575. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze Grid virtualization engine: design, implementation and evaluation IEEE Systems Journal, Vol 3, issue 4, Dec. 2009

  576. Lizhe Wang, Gregor von Laszewski, Marcel Kunze and Jie Tao. Cloud computing: a perspective study New Generation Computing, Vol 28, 137-146, 2010. Ohmsha, Ltd. and Springer

  577. Gregor von Laszewski and Lizhe Wang. GreenIT Service Level Agreements . In proceeding of Service Level Agreements in Grids Workshop, held in conjunction with The 10th IEEE International Conference on Grid Computing (Grid 2009) October 13, 2009 Banff, Canada.

  578. Tobias Kurze, Lizhe Wang, Gregor von Laszewski, Jie Tao, Marcel Kunze, and Fugang Wang, Jaliya Ekanayake. Cyberaide Virtual Applicance: On-demand Deploying Middleware for Cyberinfrastructure . First International Conference CloudComp on Cloud Computing October 19 - 21, 2009, Munich, Germany.

  579. Bruno Schulze and Geoffrey C Fox Advanced Scheduling Strategies and Grid Programming Environments Editorial of Special Issue for 6th International Workshop on Middleware for Grid Computing (MGC 2008) and 2nd Latin American Grid (LAGrid 2008) workshop, Concurrency"c0 c7 c3"> DOI

  580. Wang, L., G. von Laszewski, and J. Dayal "Thermal aware workload scheduling with backfilling for green data centers." 28th IEEE International Performance Computing and Communications Conference (IPCCC'09) December 12-14 2009 Phoenix, Arizona, USA

  581. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce A Federated Approach to Information Management in Grids Journal of Web Services Research, vol. 7, no. 1, pp. 65-98, 2010

  582. Jay W Parker, Margaret T Glasscoe, Andrea Donnellan, Robert A Granat, John Belting Rundle, Dennis McLeod, Rami Al-Ganmi, Lisa Grant Ludwig, Geoffrey Fox, Marlon Pierce, Walt Brooks QuakeSim: Increasing Utility of Spacebourne and Ground-based Earthquake Fault Data Earth and Space Science Informatics 2009 AGU Fall Meeting 14–18 December 2009 San Francisco, California, USA

  583. Jaliya Ekanayake, (Advisor Geoffrey Fox) Architecture and Performance of Runtime Environments for Data Intensive Scalable Computing Doctoral Showcase SC09 Portland Oregon November 18 2009

  584. Xiaohong Qiu, Jaliya Ekanayake, Thilina Gunarathne, Seung-Hee Bae, Jong Youl Choi, Scott Beason, Geoffrey Fox Using MapReduce Technologies in Bioinformatics and Medical Informatics in Using Clouds for Parallel Computations in Systems Biology workshop at SC09 Portland Oregon November 16 2009

  585. Thilina Gunarathne, Chathura Herath, Eran Chinthaka, Suresh Marru Experience with Adapting a WS-BPEL Runtime for eScience Workflows GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009

  586. Zhenhua Guo, Raminderjeet Singh, Marlon Pierce Building the PolarGrid Portal Using Web 2.0 and OpenSocial GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009

  587. Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thilina Gunarathne, Geoffrey Fox, Roger Barga, Dennis Gannon Cloud Technologies for Bioinformatics Applications 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers ( SC09), Portland, Oregon, November 16th, 2009 Cloud technologies for bioinformatics applications Xiaohong Qiu , Jaliya Ekanayake , Scott Beason , Thilina Gunarathne , Geoffrey Fox , Roger Barga , Dennis Gannon MTAGS '09 Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, 2009 frames are not supported

  588. Sangyoon Oh, Mehmet Aktas, Geoffrey Fox Efficiency Benefits in Mobile Web Service Architecture Using Context-store Technical Report October 6 2009

  589. Lizhe Wang and Gregor von Laszewski and Jai Dayal and Xi He and Andrew J. Younge and Thomas R. Furlani Towards Thermal Aware Workload Scheduling in a Data Center Proceedings of the 10th International Symposium on Pervasive Systems, Algorithms and Networks (ISPAN2009) 14-16 December 2009 Kao-Hsiung, Taiwan

  590. Casey Rathbone and Lizhe Wang and Gregor von Laszewski and Fugang Wang Cyberaide Creative: On-Demand Cyberinfrastructure Provision in Clouds International Workshop on Grid Computing, Applications, and Technologies (GridCAT 2009) in conjunction with the 10th International Symposium on Pervasive Systems, Algorithms and Networks (I-SPAN 2009) 14-16 December 2009 Kao-Hsiung, Taiwan

  591. Gregor von Laszewski and Lizhe Wang and Andrew J. Younge and Xi He Power-Aware Scheduling of Virtual Machines in DVFS-enabled Clusters IEEE Cluster Conference 2009 New Orleans 31 Aug. - Sep. 4 2009

  592. Geoffrey Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu Biomedical Case Studies in Data Intensive Computing Keynote talk at The 1st International Conference on Cloud Computing (CloudCom 2009) at Beijing Jiaotong University, China December 1-4, 2009, Springer Verlag LNC 5931 "Cloud Computing" Martin Jaatun, Gansen Zhao, Chunming Rong (Eds), pp 2-18 (2009)

  593. Marlon E. Pierce, Geoffrey C. Fox, Yu Ma, Jun Wang, Whither Spatial Cyberinfrastructure? Technical Report August 31 2009

  594. Jong Youl Choi Deterministic Annealing for Generative Topographic Mapping GTM Technical report September 2 2009

  595. Xiaoming Gao, Mike Lowe, Yu Ma, Marlon Pierce Supporting Cloud Computing with the Virtual Block Store System Cloud Workshop at 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  596. Xiaoming Gao, Mike Lowe, Yu Ma, Marlon Pierce Supporting Cloud Computing with the Virtual Block Store System 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  597. Xiaohong Qiu, Jaliya Ekanayake, Geoffrey Fox, Thilina Gunarathne, Scott Beason Computational Methods for Large Scale DNA Data Analysis Microsoft eScience workshop , October 16 2009, Gates Center Carnegie Mellon University Pittsburgh

  598. Jaliya Ekanayake, Atilla Soner Balkir, Thilina Gunarathne, Geoffrey Fox, Christophe Poulain, Nelson Araujo, Roger Barga DryadLINQ for Scientific Analyses 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  599. Geoffrey Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu Case Studies in Data Intensive Computing: Large Scale DNA Sequence Analysis as the Million Sequence Challenge and Biomedical Computing Technical Report 9 August 2009

  600. Andrea Donnellan, Jay Parker, Charles Norton, Margaret Glasscoe, Robert Granat, John Rundle, Geoffrey Fox, Marlon Pierce3, Lisa Grant, Dennis McLeod, and Rami Al-Ghanmi QuakeSim Earthquake Modeling and Assimilation Environment Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS209 August 11-15 2009

  601. Marlon Pierce and Geoffrey Fox QuakeSim Web Computing Infrastructure Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS2009 August 11-15 2009

  602. Geoffrey Fox and Marlon PIerce Web 2.0, Cloud Computing, and Earthquake Forecasting Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS2009 August 11-15 2009

  603. Eran Chinthaka, Jaliya Ekanayake, David Leake, and Beth Plale, CBR Based Workflow Composition Assistant, Accepted for publication, IEEE 2009 Third International Workshop on Scientific Workflows (SWF 2009) In conjunction with 7th IEEE International Conference on Web Services (ICWS 2009) July 10, 2009, Los Angeles, CA, USA

  604. Geoffrey Fox, Seung-Hee Bae, Jaliya Ekanayake, Xiaohong Qiu, and Huapeng Yuan Parallel Data Mining from Multicore to Cloudy Grids Proceedings of HPC 2008 High Performance Computing and Grids workshop Cetraro Italy July 3 2008

  605. Jaliya Ekanayake, Geoffrey Fox High Performance Parallel Computing with Clouds and Cloud Technologies First International Conference CloudComp on Cloud Computing October 19 - 21, 2009, Munich, Germany

  606. Xiaoming Gao, Mike Lowe, Marlon Pierce, Virtual Block Store Abstract at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  607. Marlon Pierce, Suresh Marru, Gregor von Laszewski, Wenjun Wu Building Science Gateways Tutorial at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  608. Marlon Pierce, Suresh Marru, Wenjun Wu, Gopi Kandaswami, Gregor von Laszewski, Rion Dooley, Maytal Dahan, Nancy Wilkins-Diehr, Mary Thomas Open Grid Computing Environments Paper at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  609. Richard Alo, Karl Barnes , Diane Baxter, Julie Foertsch , Geoffrey Fox, Al Kuslikis, Alex Ramirez CyberInfrastructure (CI) Days at Minority-Serving Intuitions (MSIs): A MSI-CIEC Update in a Changing Climate Poster at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  610. Siddharth Maini, Joshua Rosen, Marlon E. Pierce, Geoffrey C. Fox AVATS: Audio-Video and Textual Synchronization Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  611. Geoffrey Fox, Alex Ho, Eddy Chan, William Wang Measured Characteristics of Distributed Cloud Computing Infrastructure for Message-based Collaboration Applications Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  612. Tao Huang, Shrideep Pallickara, Geoffrey Fox A Distributed Framework for Collaborative Annotation of Streams Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  613. Sangmi Lee Pallickara, Marlon Pierce, Qunfeng Dong, and ChinHua Kong, Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters PPAM 2009 EIGHTH INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING AND APPLIED MATHEMATICS Wroclaw, Poland, September 13-16, 2009

  614. Robert Granat, Xiaoming Gao and Marlon Pierce The QuakeSim Web Portal Environment for GPS Data Analysis , Workshop on Sensor Networks for Earth and Space Science Applications, SAn Francisco April 16 2009

  615. Jun Ji Asynchronous FMGProcess Web services Technical Report April 12 2009

  616. Marlon E. Pierce, Xiaoming Gao, Sangmi L. Pallickara, Zhenhua Guo, Geoffrey C. Fox The QuakeSim Portal and Services: New Approaches to Science Gateway Development Techniques Submitted to Concurrency and Computation:Practice and Experience Special Issue on Computation and Informatics in Earthquake Science: The ACES Perspective 6th ACES International workshop Cairns, Australia 11 - 16 May 2008

  617. Geoffrey Fox Summary of Cloud Systems Birds of a Feather session at OGF22 Hyatt Regency Cambridge MA February 27 2008

  618. Kangseok KIm and Geoffrey Fox XGSP-RBAC: Access Control Mechanism based on RBAC Model in Ubiquitous Collaboration System Technical Report February 2 2009

  619. Kangseok KIm and Geoffrey Fox Modeling, Simulation, and Practice of Floor Control for Synchronous and Ubiquitous Collaboration (Technical Report February 2 2009) Multimedia Tools and Applications Journal DOI

  620. Mehmet Aktas and Marlon Pierce High Performance Hybrid Information Service Architecture Technical Report January 24 2009, Concurrency and Computation: Practice and Experience, Published online: Jan 25, 2010 DOI

  621. Geoffrey Fox, Seung-Hee Bae, Jaliya Ekanayake, Xiaohong Qiu, and Huapeng Yuan Parallel Data Mining from Multicore to Cloudy Grids Proceedings of HPC 2008 High Performance Computing and Grids workshop Cetraro Italy July 3 2008

  622. Xiaohong Qiu and Geoffrey Fox Parallel Data Mining for Medical Informatics Technical Report January 13 2009

  623. Nariman Mirzaei Cloud Computing Independent Study Report January 9 2009

  624. Geoffrey Fox, Marlon Pierce, Xiaohong Qiu and Shrideep Pallickara Summary of Community Grid laboratory Activities January to December 2008 Technical Report January 5 2009

  625. Carl Lagoze describing work by University of Cambridge (Peter Murray Rust, Jim Downing), Cornell University (Carl Lagoze, Theresa Velden), Indiana University (Geoffrey Fox, Marlon Pierce), Penn State University (C. Lee Giles, Prasenjit Mitra, Karl Mueller), PuBChem (Steve Bryant), and University of Southampton (Jeremy Frey, Simon Coles). The OreChem Project paper at WebSci'09: Society On-Line Athens, Greece 18th–20th March, 2009

  626. Marlon E. Pierce, Xiaoming Gao, Sangmi L. Pallickara, Zhenhua Guo, Geoffrey C. Fox QuakeSim Portal and Services: New Approaches to Science Gateway Development Techniques Concurrency and Computation: Practice and Experience Special Issue on Computation and Informatics in Earthquake Science: The ACES Perspective 6th ACES International workshop Cairns, Australia 11 - 16 May 2008

  627. Geoffrey Fox Distributed and Parallel Programming Environments and their performance Abstract of keynote talk at Microsoft Research eScience Workshop December 9 2008 IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  628. Yili Gong, Marlon E. Pierce, and Geoffrey C. Fox Dynamic Resource-Critical Workflow Scheduling in Heterogeneous Environments Technical Report December 6 2008

  629. Jong Y. Choi, Joshua Rosen, Siddharth Maini, Marlon E. Pierce, and Geoffrey C. Fox Collective Collaborative Tagging System Proceedings of GCE08 workshop at SC08 Austin Texas November 16 2008

  630. Sangyoon Oh, Jai-Hoon Kim and Geoffrey Fox Real-Time Performance Analysis for Publish/Subscribe Systems Future Generation Computer Systems 26 (2010) 318-323 DOI

  631. Mehmet S. Aktas, Geoffrey Fox and Marlon Pierce Information Federation in Grids 4th International Conference on Semantics, Knowledge and Grid (SKG 2008) Beijing China December 3-5 2008

  632. Shantenu Jha, Andre Merzky and Geoffrey Fox Programming Abstractions for Clouds CCA-08 Cloud Computing and its Applications Chicago ILL October 22-23 2008

  633. Geoffrey Fox and Marlon Pierce Web 2.0 and Cloud Computing Abstract of talk at APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)

  634. Marlon Pierce and Geoffrey Fox QuakeSim Web Computing Infrastructure Abstract of talk at APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)

  635. Jim Basney, Stuart Martin, JP Navarro, Marlon Pierce, Tom Scavo, Leif Strand, Tom Uram, Nancy Wilkins-Diehr, Wenjun Wu, Choonhan Youn Innovative and Collaborative Problem Solving Environments (PSE) in Distributed Resources at PSE Workshop08 in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008

  636. Youngik Yang, Jong Youl Choi, Kwangmin Choi, Marlon Pierce, Dennis Gannon and Sun Kim BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  637. Sangmi Lee Pallickara and Marlon Pierce SWARM: Scheduling Large-scale Jobs over the Loosely-Coupled HPC Clusters Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  638. Shrideep Pallickara, Jaliya Ekanayake, and Geoffrey Fox. An Overview of the Granules Runtime for Cloud Computing. Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  639. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox Map-Reduce for Data Intensive Scientific Analyses .(Earlier version Map-Reduce for Data Intensive Scientific Analyses ) Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  640. Seung-Hee Bae Parallel Multidimensional Scaling Performance on Multicore Systems at workshop on Advances in High-Performance E-Science Middleware and Applications in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008

  641. Kangseok Kim, Rajarshi Guha, Marlon E. Pierce, Geoffrey C. Fox, David J. Wild, Kevin E. Gilbert SQMD: Architecture for Scalable, Distributed Database System built on Virtual Private Servers Proceedings of "eScience for Cheminformatics and Drug Discovery" workshop at eScience 2008 , Indianapolis, IN Dec 12, 2008.

  642. Yili Gong, Marlon Pierce and Geoffrey Fox Dynamic Resource-Critical Workflow Scheduling in Heterogeneous Environments Technical Report August 10 2008

  643. Kangseok Kim, Wenjun Wu and Geoffrey Fox XGSP-Floor: Floor Control for Synchronous and Ubiquitous Collaboration Technical Report August 2 2008

  644. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox Performance of Data Intensive Supercomputing Runtime Environments Technical report August 1 2008

  645. Geoffrey Fox Integrating Parallel and Distributed Computing across Scientific and Web 2.0 Applications Abstract of keynote talk at 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 24-26 2008

  646. Xiaohong Qiu (presenter), Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Parallel Data Mining on Multicore Clusters (Old version Parallel Data Mining on Multicore Systems ) 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 24-26 2008

  647. Marlon Pierce Editorial Introduction: Special Issue on Grids and Geospatial Information Systems Special Issue Editorial Introduction: Grids and Geospatial Information Systems. Concurrency and Computation: Practice and Experience 20(14): 1611-1615 (2008)

  648. Linda B. Hayden, Geoffrey Fox, Anthony Adade Implementing Cyberinfrastructure in Support of Greenland and Antarctic SAR Data Sets Abstract ( Presentation ) for AARSE Conference . 7th International Conference of the African Association of Remote Sensing of the Environment (AARSE)-2008 Accra Ghana October 27-31 2008

  649. Marlon E. Pierce, Geoffrey C. Fox, Jong Y. Choi, Zhenhua Guo, Xiaoming Gao, and Yu Ma Using Web 2.0 for Scientific Applications and Scientific Communities To appear in Concurrency and Computation: Practice and Experience Special Issue for 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  650. Shantenu Jha, Andre Merzky and Geoffrey Fox Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Open Grid Forum Information Document July 14 2008

  651. Geoffrey Fox Parallel Data Mining from Multicore to Cloudy Grids INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING AND GRIDS HPC2008 Cetraro Italy June 30 - July 4, 2008

  652. Beytullah Yildiz, Geoffrey Fox, Shrideep Pallickara An Orchestration for Distributed Web Service Handlers The Third International Conference on Internet and Web Applications and Services ICIW 2008 June 8-13, 2008 - Athens, Greece

  653. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce, Principles and Experiences: Building a Hybrid Metadata Service for Service Oriented Architecture based Grid Applications , accepted for The Third International IEEE International Conference on Internet and Web Applications and Services ICIW'08 June 8-13, 2008 - Athens, Greece

  654. Alex Ramirez, Geoffrey Fox, Al Kuslikis, Richard Alo, Karl Barnes, Diane Baxter, and Julie Foertsch Engaging Minority-Serving Institutions (MSIs) in Cyberinfrastructure (CI) through CI Days The 3rd annual TeraGrid Conference , TeraGrid '08 All Hands Meeting Riviera Hotel and Casino in Las Vegas Nevada, June 9-13 2008

  655. Xiaohong Qiu, Geoffrey C. Fox (presenter), Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen PARALLEL CLUSTERING AND DIMENSIONAL SCALING ON MULTICORE SYSTEMS Invited talk at the 2008 High Performance Computing and Simulation Conference (HPCS 2008) In Conjunction With The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Nicosia, Cyprus June 3 - 6, 2008

  656. Jong Youl Choi Clustering Analysis of Collaborative Tagging Systems By Using The Graph Model Technical Report May 25 2008

  657. Kangseok Kim, Rajarshi Guha, Marlon E. Pierce, Geoffrey C. Fox, David J. Wild, Kevin E. Gilbert Architecture for Scalable, Distributed Database System built on Multicore Servers Technical report May 21 2008

  658. Marlon E. Pierce Geoffrey C. Fox Joshua Rosen Siddharth Maini and Jong Y. Choi Social Networking for Scientists Using Tagging and Shared Bookmarks: a Web 2.0 Application 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  659. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox Collaborative Framework for Scientific Data Analysis 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  660. Ahmet Fatih Mustacoglu and Geoffrey Fox Hybrid Consistency Framework for Distributed Annotation Records in a Collaborative Environment 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  661. Geoffrey Fox, Alex Ho, Rui Wang, Edward Chu and Isaac Kwan A Collaborative Sensor Grids Framework 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  662. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, and Seung-Hee Bae Parallel Data Mining on Multicore Systems Technical Report May 13 2008

  663. Shantenu Jha, Andre Merzky, Geoffrey Fox Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Concurrency and Computation: Practice"c0"> Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Technical Report April 8 2008)

  664. Ahmet Sayar, Geoffrey C. Fox , Marlon E. Pierce Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems (old version Supporting Event-based Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems ) chapter in book " Grid Technology for Maximizing Collaborative Decision Management and Support: Advancing Effective Virtual Organizations"

  665. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox An Architecture for Composable Scientific Data Analysis Technical Report March 10 2008

  666. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, Parallel Datamining on Multicore Systems Technical Report February 20 2008

  667. Marlon Pierce and Geoffrey Fox Web 2.0 and Geo-sciences Abstract for 6th ACES International Workshop Cairns, Australia from 11 to 16 May 2008.

  668. Pierce, M, Gao, X, Fox, G, Granat, R and Donnellan, A Services and Components for the QuakeSim Project Abstract for 6th ACES International Workshop Cairns, Australia from 11 to 16 May 2008.

  669. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox Architecture for Composable Scientific Data Analysis Technical Report January 31 2008

  670. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of Multicore Systems on Parallel Data Clustering with Deterministic Annealing ICCS 2008: "Advancing Science through Computation" Conference ; ACC CYFRONET and Institute of Computer Science AGH University of Science and Technology Kraków, POLAND; June 23-25, 2008. Springer Lecture Notes in Computer Science Volume 5101, pages 407-416, 2008. DOI

  671. Beytullah Yildiz, Shrideep Pallickara and Geoffrey Fox An Orchestration for Distributed Web Service Handlers Technical Report January 15 2008

  672. Galip Aydin, Ahmet Sayar, Harshawardhan Gadgil, Mehmet S. Aktas, Geoffrey C. Fox, Sunghoon Ko, Hasan Bulut,and Marlon E. Pierce Building and Applying Geographical Information System Grids Special Issue on Geographical information Systems and Grids based on GGF15 workshop ,Concurrency and Computation: Practice and Experience 20(14): 1653-1695 (2008)

  673. Mehmet S. Aktas, Sangyoon Oh, Geoffrey C. Fox, Marlon E. Pierce XML Metadata Services Special Issue for 2nd International Conference on Semantics, Knowledge and Grid SKG2006 Guilin China October 31 - November 3 2006. Concurrency and Computation: Practice and Experience 20(7): 801-823 (2008)

  674. Geoffrey Fox, Marlon Pierce and Shrideep Pallickara Summary of CGL Lab Activities January-December 2007 Technical Report December 31 2007

  675. Geoffrey Fox and Marlon Pierce Grids meet Too much Computing, Too much Data and never Too much Simplicity White Paper December 27 2007

  676. Byounghoon Lee, Sunghwa Lim, Jai-Hoon Kim , and Geoffrey Fox Lease Based Consistency Scheme in the Web Environment Future Generation Computer Systems Volume 25, Issue 1, January 2009, Pages 8-19

  677. Geoffrey Fox and Marlon Pierce Grids Challenged by a Web 2.0 and Multicore Sandwich Special Issue of Concurrency Compuitation:Practice and Experience on Seventh IEEE International Symposium on Cluster Computing and the Grid — CCGrid 2007, Keynote Talk Rio de Janeiro Brazil May 15 2007

  678. Shrideep Pallickara, Hasan Bulut and Geoffrey Fox Fault-Tolerant Reliable Delivery of Messages in Distributed Publish/Subscribe Systems to appear in International Journal of Autonomic Computing 2008

  679. Marlon Pierce et al Open Grid Computing Environments (OGCE) Annual Report: September 1, 2003-August 31, 2007 prepared December 2007

  680. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Distributed High Performance Grid Information Service Technical Report December 2007

  681. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Federation in Grid Information Services Technical Report December 2007

  682. Geoffrey C. Fox, Rajarshi Guha, Donald F. McMullen, Ahmet Fatih Mustacoglu, Marlon E. Pierce, Ahmet E. Topcu, and David J. Wild Web 2.0 for Grids and e-Science INGRID 2007 - Instrumenting the Grid 2nd International Workshop on Distributed Cooperative Laboratories - S.Margherita Ligure Portofino, ITALY, April 18 2007

  683. Marlon E. Pierce, Geoffrey C. Fox, Galip Aydin, Zhigang Qi, Andrea Donnellan, Jay Parker and Robert Granat QuakeSim: Web Services, Portals, and Infrastructure for Geophysics December 19 2007 to be published in 2008 IEEE Aerospace Conference March 1-8 2008, Big Sky MT

  684. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox A Scalable Framework for the Collaborative Analysis of Scientific Data Technical Report December 12 2007 submitted to CCGrid Doctoral Symposium

  685. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Multi-Paradigm Messaging Runtime Integrating Grids and Multicore Systems (updated from original) September 23 2007 published in proceedings of eScience 2007 Conference Bangalore India December 10-13 2007

  686. A. Sayar, G. C. Fox, M. Pierce Supporting Event-based Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems Technical Report December 1 2007

  687. Andrea Donnellan, Jay Parker, Robert Granat, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Rami Al-Ghanmi, Lisa Grant, Walter Brooks QuakeSim: Efficient Modeling of Sensor Web Data in a Web Services Environment November 30 2007 to be published in 2008 IEEE Aerospace Conference March 1-8 2008, Big Sky MT

  688. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of Multicore Systems on Parallel Datamining Services Technical report November 19 2007

  689. Geoffrey Fox, Seung-Hee Bae, Rajarshi Guha, Marlon E. Pierce, Xiaohong Qiu, David J. Wild , H. Yuan High Performance Robust Datamining for Cheminformatics PAPER ID: 1168842 at Division of Chemical Information session on Cheminformatics: From Teaching to Research Tuesday, April 8, 2008 from 11:35 AM to 12:00 PM at Spring 2008 American Chemical Society National Meeting and Exposition Sunday, April 6 — Thursday, April 10, 2008 New Orleans, LA USA

  690. Rajarshi Guha, Geoffrey Fox, Kevin E. Gilbert, Marlon Pierce and David Wild I don't care where my data and methods are: A web-service approach for distributed access to methods, data and models. PAPER ID: 1170920 at Division of Chemical Information session on Cheminformatics: From Teaching to Research Tuesday, April 8, 2008 at Spring 2008 American Chemical Society National Meeting and Exposition Sunday, April 6 — Thursday, April 10, 2008 New Orleans, LA USA

  691. Mehmet A. Nacar, Marlon E. Pierce, Andrea Donnellan, Geoffrey C. Fox Building QuakeSim Portlets with GTLAB Paper at GCE07 Workshop November 11-12 2007 at SC07 Reno Nevada

  692. Ali Kaplan, Geoffrey C. Fox, Gregor von Laszewski GridTorrent Framework: A High-performance Data Transfer and Data Sharing Framework for Scientific Computing Paper at GCE07 Workshop November 11-12 2007 at SC07 Reno Nevada

  693. Jong Youl Choi, Youngik Yang, Sun Kim, Dennis Gannon V-Lab-Protein: Virtual Collaborative Lab for Protein Sequence Analysis Proceedings of Workshop on High-Throughput Data Analysis for Proteomics and Genomics as part of BIBM Silicon Valley Fremont CA, November 2-4 2007

  694. Ahmet Fatih Mustacoglu and Geoffrey Fox Hybrid Consistency Framework for Distributed Annotation Records Technical Report October 30 2007

  695. Marlon Pierce Web 2.0: Social Networking for MSI Researchers , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  696. Geoffrey Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu Web 2.0 technology and Semantic Research Grid(SRG) , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  697. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Web 2.0 Grids and Cyberinfrastructure , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  698. Donald F. (Rick) McMullen, Marlon Pierce, Carol Deng, Kia Huffman Real-time Web 2.0: Evolution of Middleware for Grid-based Instruments and Sensors Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  699. Marlon Pierce, Geoffrey Fox, Lee Dirks, eChemistry, Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  700. Milan Jovovic, Geoffrey Fox Multi-dimensional data scaling – dynamical cascade approach Technical Report September 26 2007

  701. Geoffrey Fox, Seung-Hee Bae, Rajarshi Guha, Marlon E. Pierce, Xiaohong Qiu, David J. Wild , H. Yuan, Neil M Devadasan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Parallel Clustering in a Cheminformatics Grid The 2007 Microsoft eScience Workshop at RENCI (The Friday Center for Continuing Education UNC - Chapel Hill 100 Friday Center Drive Chapel Hill, NC 27599-1020) October 21-23 2007

  702. Geoffrey C. Fox, Marlon E. Pierce, Ahmet Fatih Mustacoglu, and Ahmet E. Topcu Web 2.0 for E-Science Environments Keynote Presentation at 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  703. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox GTLAB: Grid Tag Libraries Supporting Workflows within Science Gateways 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  704. Ahmet E. Topcu , Ahmet Fatih Mustacoglu, Geoffrey Fox , Aurel Cami Integration of Collaborative Information Systems in Web 2.0 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  705. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of a Multi-Paradigm Messaging Runtime on Multicore Systems Abstract of Poster at Grid 2007 Conference , Omni Austin Downtown Hotel Austin Texas, September 19 2007

  706. Donnellan, Andrea (JPL), John Rundle (UC Davis), Lisa Grant (UC Irvine), Dennis McLeod (USC), Geoffrey Fox (Indiana U), Marlon Pierce (Indiana U), Terry Tullis (Brown U), Walt Brooks (NASA Ames), Jay Parker (JPL), and Robert Granat (JPL) Abstract for 2007 SCEC Annual Meeting , September 9-12 at the Palm Springs Hilton Hotel in Palm Springs, California.

  707. Geoffrey C. Fox and Hai Zhuge Editorial for Special Issue of the 2nd International Conference on Semantics, Knowledge and Grid Concurrency and Computation: Practice and Experience Special Issue for 2nd International Conference on Semantics, Knowledge and Grid SKG2006 Guilin China October 31 - November 3 2006

  708. Ahmet E. Topcu , Ahmet Fatih Mustacoglu, Geoffrey Fox , Aurel Cami Integration of Collaborative Information Systems in Web 2.0 Technical report June 27 2007

  709. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox GTLAB: Grid Tag Libraries Supporting Workflows within Science Gateways Technical report June 20 2007

  710. Shrideep Pallickara, Hasan Bulut, and Geoffrey Fox. Fault-Tolerant Reliable Delivery of Messages in Distributed Publish/Subscribe Systems . Proceedings of the 4th IEEE International Conference on Autonomic Computing. Jacksonville, Florida. June 12-15 2007

  711. Yili Gong, Marlon E. Pierce, and Geoffrey C. Fox Matchmaking Scientific Workflows in Grid Environments (updated from original ) Proceedings of IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2007), November 19 - 21, 2007, at Cambridge, USA

  712. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management of Grid Services Technical Report May 19 2007 to appear in Proceedings of IEEE Cluster 2007

  713. Andrea Donnellan, Jay Parker, Charles Norton, Gregory Lyzenga, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Lisa Grant, Walter Brooks and Terry Tullis QuakeSim: Enabling Model Interactions in Solid Earth Science Sensor Webs NASA Science Technology Conference NSTC 2007 University of Maryland June 19-21 2007

  714. Marlon E. Pierce, Geoffrey Fox, Huapeng Yuan, and Yu Deng Cyberinfrastructure and Web 2.0"High Performance Computing and Grids in Action" (L. Grandinetti Editor) published by IOS Press, Amsterdam, as the volume no 16 in the series "Advances in Parallel Computing"., Proceedings of HPC2006 July 4 2006 Cetraro Italy

  715. Xiaohong Qiu Multi-Paradigm Run Time MPR for Multicore Systems Position Paper for Microsoft Multicore Computing Workshop Seattle June 20-21 2007

  716. Fatih Mustacoglu Event-Based Model for Reconciling Digital Entries May 3 PhD Proposal Exam Indiana University Bloomington May 3 2007

  717. Marlon E. Pierce, Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin,Harshawardhan Gadgil, Zhigang Qi and Ahmet Sayar The QuakeSim Project: Web Services for Managing Geophysical Data and Applications PAGEOPH Special Issue for 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii Pure and Applied Geophysics Volume 165, Numbers 3-4 / April, 2008 pages 635-651 DOI

  718. Sang Boem Lim, Han-Ku Lee, Bryan Carpenter, and Geoffrey Fox Runtime Support for Scalable Programming in Java in Journal of Supercomputing Special Issue from Third International Symposium on Parallel and Distributed Processing and Applications ( ISPA'05), Nanjing , China November 2-5 2005 DOI

  719. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox Extending GTLAB Tag Libraries for Grid Workflows Technical Report April 18 2007

  720. Xiaohong Qiu, Geoffrey Fox, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Multi-Paradigm Messaging Run Time on Multicore Systems Technical Report April 16 2007

  721. Zao Liu, Marlon E. Pierce, and Geoffrey C. Fox Implementing a Caching and Tiling Map Server: a Web 2.0 Case Study Proceedings of The 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007)

  722. Ahmet Fatih Mustacoglu, Ahmet E. Topcu Aurel Cami, Geoffrey Fox A Novel Event-Based Consistency Model for Supporting Collaborative Cyberinfrastructure Based Scientific Research Proceedings of The 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007)

  723. Galip Aydin, Zhigang Qi, Marlon E. Pierce, Yehuda Bock, and Geoffrey C. Fox Building a Sensor Grid for Real Time Global Positioning System Data Proceedings of Workshop on Principles of Pervasive Information Systems Design Sunday, May 13, 2007 In conjunction with Pervasive 2007 Toronto, Ontario, Canada

  724. Ahmet Fatih Mustacoglu, and Geoffrey Fox AJAX Integration Approach for Collaborative Calendar-Server Web Services Proceedings of The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Las Vegas, Nevada, USA (June 25-28, 2007)

  725. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara Scalable, Fault-tolerant Management in a Service Oriented Architecture Poster in pages 235-236 of proceedings for IEEE International Symposium in High-Performance Distributed Computing (HPDC) Monterey California June 27-29 2007 Scalable, fault-tolerant management in a service oriented architecture Harshawardhan Gadgil , Geoffrey Fox , Shrideep Pallickara , Marlon Pierce HPDC '07 Proceedings of the 16th international symposium on High performance distributed computing, 2007 frames are not supported

  726. Mehmet A. Nacar, Jong Y. Choi, Marlon E. Pierce, and Geoffrey C. Fox Building a Grid Portal for Teragrid's Big Red Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  727. Richard A. Aló, Karl Barnes, Diane Baxter, Geoffrey Fox, Al Kuslikis, and Alex Ramirez Advances in the MSI Community and the MSI CyberIn-frastructure Empowerment Coalition (MSI-CIEC) Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  728. Linda Hayden, Geoffrey Fox, and Prasad Gogineni Cyberinfrastructure for Remote Sensing of Ice Sheets Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  729. Geoffrey Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu, Aurel Cami SRG: A Digital Document-Enhanced Service Oriented Research Grid April 7 2007 accepted for IEEE International Conference on Information Reuse and Integration (IEEE IRI-2007) August 13 - 15, 2007 Las Vegas, USA

  730. Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers Report on the 2006 NSF Workshop on Challenges of Scientific Workflows Computer, vol. 40, no. 12, pp. 24-32, Dec., 2007. DOI . See original meeting

  731. Galip Aydin An Overview of the Open Geospatial Consortium Standards and their use in Community Grids Laboratory Technical Report February 23 2007

  732. Jay Parker, Andrea Donnellan and Marlon Pierce QuakeSim lessons for NASA Earth Science sensor webs February 12 2007 White paper for ESTO / AIST Sensor Web PI Meeting - February 13-14, 2007, San Diego

  733. Jack Dongarra, Dennis Gannon, Geoffrey Fox, and Ken Kennedy The Impact of Multicore on Computational Science Software Technical Report February 5 2007; CTWatch Quarterly Volume 3, Number 1 February 2007

  734. Xiaohong Qiu, Geoffrey Fox, Alex Ho Analysis of Concurrency and Coordination Runtime CCR and DSS for Parallel and Distributed Computing Technical Report January 21 2007

  735. Galip Aydin, Zhigang Qi, Marlon E. Pierce, Geoffrey C. Fox, Yehuda Bock Architecture, Performance, and Scalability of a Real-Time Global Positioning System Data Grid 17 January 2007, Special issue on Computational Challenges in Geosciences in PEPI (Physics of the Earth and Planetary Interiors) 163 (2007) 347-359, DOI

  736. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management in a Service Oriented Architecture Technical Report January 16 2007

  737. Shrideep Pallickara, Jaliya Ekanayake, Geoffrey Fox, A Scalable Approach for the Secure and Authorized Tracking of the Availability of Entities in Distributed Systems . (To appear) Proceedings of the 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 2007). Long Beach, California.

  738. Robert Granat, Galip Aydin, Marlon Pierce and Zhigang Qi, Analysis of Streaming GPS Measurements of Surface Displacement Through a Web Services Environment , 2007 IEEE Symposium on Computational Intelligence and Data Mining, April 1-5 2007, Honolulu, HI, USA

  739. Robert Granat, Galip Aydin, Zhigang Qi, and Marlon Pierce, GPS Sensor Web Time Series Analysis Using SensorGrid Technology American Geophysical Union AGU Fall Meeting , Moscone Conventon Center, San Francisco, CA, USA, 11–15 December 2006.

  740. Geoffrey Fox and Xiaoping Sun, Progress of the Knowledge Grid Editorial for special issue for 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005 published in Special Issue: Progress of the Knowledge Grid Concurrency and Computation: Practice and Experience Volume 19, Issue 15, Date: October 2007, Pages: 2011-2012 DOI

  741. Geoffrey C. Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu, Aurel Cami SRG: A Digital Document-Enhanced Service Oriented Research Grid Technical Report, November 28 2006

  742. M P Thomas, J Burruss, L Cinquini, G Fox, D Gannon, L Gilbert, G von Laszewski, K Jackson, D Middleton, R Moore, M Pierce, B Plale, A Rajasekar, R Regno, E Roberts, D Schissel, A Seth and W Schroeder, Grid portal architectures for scientific applications SciDAC 2005, SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING 26–30 June 2005, San Francisco, CA, USA. Journal of Physics Volume 16, 2005 , Pages 596-600

  743. Yili Gong, Yongqiang Xiong, Qian Zhang, Zhensheng Zhang, Wenjie Wang and Zhiwei Xu. Anycast Routing in Delay Tolerant Networks . Proceedings of Globecom'06, San Francisco, CA, Nov. 27 - Dec. 1, 2006.

  744. Shrideep Pallickara, Geoffrey Fox, Mehmet Aktas, Harshawardhan Gadgil, Beytullah Yildiz, Sangyoon Oh, Sima Patel, Marlon Pierce and Damodar Yemme A Retrospective on the Development of Web Service Specifications December 2006. Chapter in Book Securing Web Services: Practical Usage of Standards and Specifications. Editor Periorellis Panos, University of Newcastle Upon Tyne. Published by Information Science Reference (IGI Global),November 1 2007. ISBN-10: 1599046393; ISBN-13: 978-1599046396.

  745. Mehmet Nacar, Marlon Pierce, Gordon Erlebacher, Geoffrey Fox. Designing Grid Tag Libraries and Grid Beans Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006

  746. Hao Yin, Sofia Brenes-Barahona, Donald F. McMullen, Marlon Pierce, Kianosh Huffman, Geoffrey Fox, A PERMIS-based Authorization Solution between Portlets and Back-end Web Services . Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006

  747. Xiao Dong, Kevin Gilbert, Rajarshi Guha, Jungkee Kim, Marlon Pierce, Geoffrey C. Fox and David J. Wild Smart Mining of Drug Discovery Information: 1. A web service and workflow infrastructure Submitted to Journal of Chemical Information and Modeling October 2006

  748. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management in a Service Oriented Architecture Technical Report October 10 2006

  749. Smitha Ajay and Jaliya Ekanayake ANALYSIS OF THE USAGE STATISTICS OF ROBOTS EXCLUSION STANDARD IADIS International Conference WWW/Internet 2006 Murcia, Spain 5-8 October 2006

  750. Marlon E. Pierce, Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Harshawardhan Gadgil, Zhigang Qi, and Ahmet Sayar The Solid Earth Research Virtual Observatory: Web Services for Managing Geophysical Data and Applications Unpublished draft for PAGEOPH Special Issue for 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii

  751. Andrea Donnellan, Jay Parker, Charles Norton, Gregory Lyzenga, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, John Rundle, Don McLeod, Lisa Grant, Walter Brooks, Terry Tullis QuakeSim: Enabling Model Interactions in Solid Earth Science Sensor Webs Technical Report October 2006

  752. Srinath Perera, Chathura Herath, Jaliya Ekanayake, Eran Chinthaka, Ajith Ranabahu, Deepal Jayasinghe, Sanjiva Weerawarana,Glen Daniels Axis2, Middleware for Next Generation Web Services Proceedings of the IEEE International Conference on Web Services (ICWS'06) Hyatt Regency O'Hare, Rosemont, Illinois, 60018, USA September 18-22 2006

  753. Mehmet S. Aktas, Sangyoon Oh, Geoffrey C. Fox, and Marlon E. Pierce XML Metadata Services and Older version Proceedings of SKG2006 Guilin China October 31 - November 3 2006.

  754. Fang Juan, Geoffrey Fox, Marlon Pierce Grid Portal System Based on GPIR Proceedings of SKG2006 Guilin China October 31 - November 3 2006.

  755. Geoffrey Fox and Dennis Gannon A Survey of the Role and Use of Web Services and Service Oriented Architectures in Scientific/Technical Grids Technical Report August 2006

  756. Sangyoon Oh and Geoffrey Fox Optimizing Web Service Messaging Performance in Mobile Computing July 2006. Published in Special Issue in Grid Technology and applications of Journal Of Future Generation Computer Systems, Elsevier, Volume 23, Issue 4, May 2007, Pages 623-632 DOI

  757. Xiaohong Qiu and Anumit Jooloor Web Service Architecture for e-Learning Special issue for EISTA 2004 International Conference on Education and Information Systems: Technologies and Applications July 21-25 2004 Orlando published in Journal of Systemics, Cybernetics and Informatics Volume 3, Issue 5 2006

  758. Open Grid Computing Environments NSF NMI Project report (Marlon Pierce PI) Open Grid Computing Environments (OGCE) Annual Report: June 1, 2005-May 31, 2006 June 26 2006

  759. Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang. A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems . Proceedings (pages 215-222) of the 7th IEEE/ACM International Conference on Grid Computing (GRID 2006). Barcelona, Spain; September 28th-29th 2006. DOI

  760. Hao Yin, Donald F. McMullen, Mehmet A. Nacar, Marlon Pierce, Kianosh Huffman, Geoffrey Fox and Yu Ma Providing Portlet-Based Client Access to CIMA-Enabled Crystallographic Instruments, Sensors, and Data Technical Report April 21 2006 with short poster version for 7th IEEE/ACM International Conference on Grid Computing (GRID 2006). Barcelona, Spain.

  761. Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil and Marlon E. Pierce Streaming Data Services to Support Archival and Real-Time Geographical Information System Grids Sixth Annual NASA Earth Science Technology Conference June 27th - 29th College Park, MD

  762. Richard Alo, Karl Barnes, Diane Baxter, Geoffrey Fox, Al Kuslikis, Calvin Lowe, Alex Ramirez, Selena Singleton MSI-CIEC: MSI Cyberinfrastructure Empowerment Coalition and the TeraGrid (Abstract ) TeraGrid '06 Indianapolis IN June 12-15 2006

  763. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara and Marlon Pierce Managing Grid Messaging Middleware Proceedings of IEEE Conference on the Challenges of Large Applications in Distributed Environments ( CLADE) Paris France June 19 2006, pp. 83 - 91 DOI

  764. Geoffrey Fox and Hai Zhuge GCC2005 Special Issue on Autonomous Grid Computing Fourth International Conference on Grid and Cooperative Computing ( GCC2005), held in Beijing, China, during Nov 30-Dec 3, 2005. Editorial for Special Issue: Autonomous Grid Computing, Concurrency and Computation: Practice and Experience Volume 19, Issue 7, Date: May 2007, Pages: 943-944 DOI

  765. Sangyoon Oh, Mehmet S. Aktas, Marlon Pierce, Geoffrey C. Fox Optimizing Web Service Messaging Performance Using a Context Store for Static Data Invited paper for 5th WSEAS Int.Conf. on TELECOMMUNICATIONS and INFORMATICS (TELE-INFO '06 ), Istanbul, Turkey, May 27-29, 2006

  766. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System March 25 2006 to appear in book "Service-Oriented Architecture - Concepts and Cases" published by Institute of Chartered Financial Analysts of India (ICFAI) University

  767. Geoffrey Fox Grid-based Information Architecture for iSERVO International Solid Earth Research Virtual Organization Abstract for Western Pacific Geophysics Meeting ( WPGM) 24-27 July 2006 Beijing China

  768. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Fault Tolerant High Performance Information Services for Dynamic Collections of Grid and Web Services FGCS Special issue from 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005; Future Generation Computer Systems Volume 23, Issue 3, March 2007, Pages 317-337 DOI

  769. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Andrea Donnellan, Harshawardhan Gadgil, Robert Granat, Shrideep Pallickara, Jay Parker, Marlon E. Pierce, Sangyoon Oh, John Rundle, Ahmet Sayar, and Michael Scharber Building Sensor Filter Grids: Information Architecture for the Data Deluge IEEE Proceedings of 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005 DOI

  770. Jay Alameda, Marcus Christie, Geoffrey Fox, Joe Futrelle, Dennis Gannon, Mihael Hategan, Gregor von Laszewski, Mehmet A. Nacar, Marlon Pierce, Eric Roberts, Charles Severance, and Mary Thomas The Open Grid Computing Environments Collaboration: Portlets and Services for Science Gateways March 2006. Special Issue for Science Gateways GGF14 workshop . Concurrency and Computation: Practice and Experience Volume 19, Issue 6, Date: 25 April 2007, Pages: 921-942 DOI

  771. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Services for Dynamically Assembled Semantic Grids IEEE Proceedings of 1st International Conference on SKG2005 Semantics, Knowledge and Grid Beijing China November 27-29 2005 page 10 DOI

  772. Geoffrey Fox, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, and Wenjun Wu Management of Real-Time Streaming Data Grid Services March 12 2006. Special Issue from Grid and Cooperative Computing 4th International Conference November 30 to December 3 2005 Beijing China. Concurrency and Computation: Practice and Experience Volume 19, Issue 7, Date: May 2007, Pages: 983-998 DOI

  773. Geoffrey Fox Collaboration and Community Grids Special Session VI: Collaboration and Community Grids Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp 419-428. ISBN 0-9785699-0-3 DOI

  774. Ahmet Fatih Mustacoglu, Wenjun Wu, and Geoffrey Fox Internet Calendaring and Scheduling Core Object Specification (iCalendar) Compatible Collaborative Calendar-Server (CCS) Web Services Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp12-17. ISBN 0-9785699-0-3 DOI

  775. Wenjun Wu, Tao Huang, Geoffrey Fox Building Scalable and High Efficient Java Multimedia Collaboration Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp18-25. ISBN 0-9785699-0-3 DOI

  776. Minjun Wang, Geoffrey Fox and Marlon Pierce Collaboration Entities on Deterministic Finite Automata Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp26-37. ISBN 0-9785699-0-3 DOI

  777. Sangyoon Oh and Geoffrey Fox Optimizing Web Service Messaging Performance in Mobile Computing Technical Report, March 1 2006

  778. Hyunju Kim, Loretta Moore, Robert Whalin, Geoffrey Fox, An Experience on a Distance Education Course over the Access Grid Nodes Proceedings of 4th International Conference on Education and Information Systems, Technologies and Applications (EISTA 2006) Orlando, USA, July 20-23, 2006.

  779. Xiaohong Qiu and Anumit Jooloor Web Service Architecture for e-Learning March 2006, to be published in Journal of Systemics, Cybernetics and Informatics

  780. Shrideep Pallickara, Geoffrey Fox and Harshawardhan Gadgil. On the Secure Creation, Organization and Discovery of Topics in Distributed Publish/Subscribe Systems . International Journal of High Performance Computing and Networking (IJHPCN). Vol. 5, No. 3, pp.156-167. 2008. Special Issue of extended versions of the 6 best papers at the ACM/IEEE GRID 2005 Workshop.

  781. Sang Boem Lim, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara and Marlon Pierce GridFTP and Parallel TCP Support in NaradaBrokering (To appear) Journal Of Future Generation Computer Systems, published by Elseiver. Special Issue of selected papers from the Sixth International Conference on Algorithms and Architectures for Parallel Processing.

  782. Marvin Theimer, Savas Parastatidis, Tony Hey, Marty Humphrey, Geoffrey Fox An Evolutionary Approach to Realizing the Grid Vision Technical Report February 2006

  783. Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil and Marlon E. Pierce Streaming Data Services to Support Archival and Real-Time Geographical Information System Grids Technical Report February 10 2006

  784. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Managing Grid Messaging Middleware Technical Report February 8 2006

  785. Geoffrey Fox Some Comments on CiteULike Connotea and related Tools Technical Report, January 1 2006

  786. Mehmet A. Nacar, Mehmet S. Aktas, Marlon Pierce, Zhenyu Lu and Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, and David A. Yuen VLab: Collaborative Grid Services and Portals to Support Computational Material Science Dec 30, 2005 Special Issue on Grid Portals based on SC05 GCE'05 Workshop , Concurrency and Computation: Practice and Experience Volume 19, Issue 12, Date: 25 August 2007, Pages: 1717-1728 DOI

  787. Geoffrey Fox Editorial for Special Issue: ACM 2002 Java Grande–ISCOPE Conference Concurrency and Computation: Practice and Experience, Vol. 17, No. 5-6. (2005), pp. 419-422.

  788. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-ku Lee Collective communication for the HPJava programming language Concurrency and Computation: Practice and Experience, Vol. 17, No. 7-8. (June 2005), pp. 867-894. 2002 ACM Java Grande–ISCOPE Conference Part II

  789. Geoffrey Fox, Shrideep Pallickara, Xi Rao Towards enabling peer-to-peer Grids or Original Concurrency and Computation: Practice and Experience archive Volume 17 , Issue 7-8 (June 2005) Pages: 1109 - 1131. 2002 ACM Java Grande–ISCOPE Conference Part II

  790. Andrea Donnellan, John Rundle, John Ries, Geoffrey Fox, Marlon Pierce, Jay Parker, Robert Crippen, Eric DeJong, Ben Chao, Weijia Kuang, Dennis McLeod, Mitsuhiro Matu'ura, Jeremy Bloxham Illuminating Earth's Interior through Advanced Computing Computing in Science and Engg., Vol. 6, No. 1. (January 2004), pp. 36-44. DOI

  791. Mehmet Nacar, Mehmet Aktas, Marlon Pierce, Zhenyu Lu, Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, and David A. Yuen VLab: Collaborative Grid Services and Portals to Support Computational Material Science GCE'05 Workshop on Grid Portals.at SC05 Seattle, WA. November 18 2005

  792. Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Tao Huang Service Oriented Architecture for VoIP conferencing . Special Issue on Voice over IP - Theory and Practice of the International Journal of Communication Systems Volume 19, Issue 4 , Pages 445 - 461 Edited by John Fox, P. Gburzynski DOI

  793. Shrideep Pallickara, Geoffrey Fox, Beytullah Yildiz, Sangmi Lee Pallickara, Sima Patel and Damodar Yemme An Analysis of the Costs for Reliable Messaging in Web/Grid Service Environments Proceedings of the 2005 IEEE International Conference on e-Science and Grid Computing. December 5-8 2005, Melbourne, Australia

  794. Shrideep Pallickara, Harshawardhan Gadgil and Geoffrey Fox On the Discovery of Topics in Distributed Publish/Subscribe systems Proceedings of the IEEE/ACM GRID 2005 Workshop , pp 25-32. November 13-14 2005 Seattle, WA. Also selected as one of the six best papers at the workshop DOI .

  795. Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Building Messaging Substrates for Web and Grid Applications Special Issue on Scientific Applications of Grid Computing Philosophical Transactions of the Royal Society: Mathematical, Physical and Engineering Sciences. Volume 363, Number 1833, pp 1757-1773. August 15, 2005

  796. Andrea Donnellan, John Rundle, Geoffrey Fox, Dennis McLeod, Lisa Grant, Terry Tullis, Marlon Pierce, Jay Parker, Greg Lyzenga, Robert Granat , Margaret Glasscoe QuakeSim and the Solid Earth Research Virtual Observatory with Previous version Published in Special Issue of Pure and Applied Geophysics (PAGEOPH ) for Beijing July 2004 ACES Meeting , Volume 163, Numbers 11-12 / December, 2006 DOI

  797. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Sangyoon Oh, Shrideep Pallickara, Marlon E. Pierce, Ahmet Sayar, and Gang Zhai Grids for Real Time Data Applications Invited talk in proceedings of PPAM 2005 – 6th International Conference on Parallel Processing and Applied Mathematics Poznan Poland September 11-14 2005

  798. Minjun Wang, Geoffrey Fox and Marlon Pierce Thin Client Collaboration Web Services Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean

  799. Ahmet Sayar, Marlon Pierce and Geoffrey Fox Integrating AJAX Approach into GIS Visualization Web Services Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean

  800. Ahmet Fatih Mustacoglu and Geoffrey Fox Internet Calendaring and Scheduling Core Object Specification (iCalendar) Compatible Collaborative Calendar-Server (CCS) Web Services Technical Report November 2005

  801. Minjun Wang A Description of the Implementation of Collaborative ReviewPlus Technical Report July 19 2005. This is detailed description of Collaborative IDL developed for ReviewPlus application

  802. A. Sayar, M. Pierce, G. C. Fox DEVELOPING GIS VISUALIZATION WEB SERVICES FOR GEOPHYSICAL APPLICATIONS ISPRS International Society for Photogrammetry and Remote Sensing Workshop Commission II WG/2 METU, Ankara, Turkey, November, 24-25, 2005

  803. Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems Technical Report October 2005

  804. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Services for Dynamically Assembled Semantic Grids Proceedings of 1st International Conference on SKG2005 Semantics, Knowledge and Grid Beijing China November 27-29 2005

  805. Beytullah Yildiz, Shrideep Pallickara, Geoffrey Fox Experiences in Deploying Services within the Axis Container Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean, with Older version Technical Report October 2005

  806. Geoffrey Fox Community Grids Laboratory Summary September 2005

  807. Sangyoon Oh and Geoffrey C. Fox HHFR: A new architecture for Mobile Web Services: Principles and Implementations Technical report September 2005

  808. Gang Zhai, Geoffrey Fox, Marlon Pierce, Wenjun Wu, Hasan Bulut eSports: Collaborative and Synchronous Video Annotation System in Grid Computing Environment Proceedings of IEEE International Symposium on Multimedia (ISM2005), Pages 95-103, IEEE Computer Society, December 12-14, 2005 Irvine, California, USA, DOI

  809. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Shrideep Pallickara, Marlon Pierce, Ahmet Sayar, Wenjun Wu, and Gang Zhai Real Time Streaming Data Grid Applications Invited talk at TIWDC 2005 CNIT Tyrrhenian International Workshop on Digital Communications July 4-6 2005. Distributed Cooperative Laboratories: Networking, Instrumentation, and Measurements edited by Franco Davoli, Sergio Palazzo, and Sandro Zappatore, pages 253-268; Springer ISBN 0-387-29811-8 2006.

  810. Geoffrey Fox, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, and Wenjun Wu Management of Real-Time Streaming Data Grid Services Invited talk at Fourth International Conference on Grid and Cooperative Computing (GCC2005), held in Beijing, China, during Nov 30-Dec 3, 2005 and Longer Version

  811. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce An Architecture for Supporting Information in Dynamically Assembled Semantic Grids Technical report August 2005.

  812. Jungkee Kim, Geoffrey Fox, and Seong-Joon Yoo. Data Integration Hub for a Hybrid Paper Search. In Proceedings of 9th International Conference on Knowledge-based and Intelligent Information and Engineering Systems (KES) , pages 170-176 volume 3683 DOI of Lecture Notes in Artificial Intelligence. Melbourne Australia 14-16 September, 2005.

  813. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee, Collective Communications for Scalable Programming Proceedings of Third International Symposium on Parallel and Distributed Processing and Applications ( ISPA'05), Nanjing , China November 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3758, Oct 2005, Pages 286 - 297 DOI

  814. Sang Lim, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara and Marlon Pierce GridFTP and Parallel TCP Support in NaradaBrokering Proceedings of 6th International Conference on Algorithms and Architectures for Parallel Processing ICA3PP 2005 Melbourne Australia. October 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3719, Page 93-102 DOI

  815. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee, A Low--Level Communication Library for Java HPC Proceedings of 6th International Conference on Algorithms and Architectures for Parallel Processing. ICA3PP 2005 Melbourne Australia.October 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3719, Pages 429 - 434 DOI

  816. Jungkee Kim and Geoffrey Fox. Scalable Hybrid Search on Distributed Databases. In Proceedings of 3rd International Workshop on Autonomic Distributed Data and Storage Systems Management ( ADSM'05) in conjunction with ICCS 2005 , May 22-25 2005, Atlanta GA. Lecture Notes in Computer Science, Springer-Verlag Volume 3516, Pages 431 - 438. DOI

  817. Community Grids Laboratory 2005 Analysis of Grids for Global Information Grid (GiG) and Network Centric Operations and Warfare (NCOW)

  818. Taylor, S.J.E.; Fox, G.; Fujimoto, R.; Pullen, J.M.; Roberts, D.J.; Theodoropoulos, G.K. Revisiting Distributed Simulation and the Grid: A Panel Distributed Simulation and Real-Time Applications, 2005. DS-RT 2005 Proceedings. Ninth IEEE International Symposium Page161. DOI , Montreal October 10-12 2005

  819. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon E. Pierce, and Ahmet Sayar Algorithms and the Grid August 2005 talk at ALGORITMY 2005 Conference on Scientific Computing Vysoke Tatry, Podbanske March 13-18, 2005. Paper published in a regular issue of the Springer mathematical journal Computing and Visualization in Science (CVS) Volume 12, Issue3 (2009), Page 115. DOI

  820. Dennis Gannon and Geoffrey Fox Workflow in Grid Systems Editorial of special issue of Concurrency and Computation: Practice and Experience based on GGF10 Berlin meeting ; Concurrency and Computation: Practice and Experience Volume 18 , Issue 10 (August 2006) Pages: 1009 - 1019, 2006; DOI

  821. Shrideep Pallickara, Harshawardhan Gadgil and Geoffrey Fox On the Discovery of Brokers in Distributed Messaging Infrastructures Proceedings of IEEE Cluster 2005 , September 27 - 30, 2005, Boston, Massachusetts, USA DOI

  822. Geoffrey Fox, Shrideep Pallickara, Galip Aydin and Marlon Pierce Messaging in Web Service Grid with Applications to Geographical Information Systems Chapter in book based on ON HIGH PERFORMANCE COMPUTING TECHNOLOGY AND APPLICATIONS Cetraro Italy May 31-June 3 2004. “Grid Computing: A New Frontier of High Performance Computing" (ed. L. Grandinetti, Elsevier, Amsterdam, 2005) pages 305-331

  823. Ahmet Sayar, Marlon Pierce and Geoffrey Fox, Message Exchange for Web Service-Based Mapping Services , Proceedings of GeoInformatics'05 , Toronto Canada 17-19 August 2005.

  824. Ahmet Sayar, Mehmet Aktas, Galip Aydin, Marlon Pierce and Geoffrey Fox, Developing a Web Service-Compatible Map Server for Geophysical Applications Technical report June 2005

  825. Lisa B. Grant, Andrea Donnellan, Dennis McLeod, Marlon Pierce, Geoffrey C. Fox, Anne Yun-An Chen, Miryha M. Gould, Sang-Soo Sung, Paul Rundle, “A Web-Service Based Universal Approach to Heterogeneous Fault Databases", Computing in Science and Engg., Vol. 7, No. 4. (July 2005), pp. 51-57. IEEE Link

  826. Harshawardhan Gadgil, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara HPSearch: Service Management and Administration Tool Abstract for VLAB Meeting Minnesota July 21-23 2005

  827. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox. Service-Oriented Architecture for a Scalable Videoconferencing System Proceedings of IEEE International Conference on Pervasive Services 2005 (ICPS'05) July 2005, Santorini, Greece.

  828. Geoffrey Fox Community Grids Laboratory Summary July 2005

  829. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee,
    [Implementation of Collectives for Scalable Programming in
    Java](http://infomall.org/publications/PDPTA05_Collective.pdf) ,
    Proceedings of 2005 International Conference on Parallel and
    Distributed Processing Techniques and Applications (
    PDPTA'05
    June 27-30, 2005, Las Vegas, USA)

  830. Mehmet Aktas, Galip Aydin, Andrea Donnellan, Geoffrey Fox, Robert Granat, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, and Ahmet Sayar Implementing Geographical Information System Grid Services to Support Computational Geophysics in a Service-Oriented Environment NASA Earth-Sun System Technology Conference University of Maryland, Adelphi, Maryland, June 28 - 30, 2005. All material is online for paper , presentation , and abstract

  831. M. P. Thomas, J. Burruss, L. Cinquini, G. Fox, D. Gannon, L. Gilbert, G. von Laszewski, K. Jackson, D. Middleton, R. Moore, M. Pierce, B. Plale, A. Rajasekar, R. Regno, E. Roberts, D. Schissel, A. Seth, and W. Schroeder Grid Portal Architectures for Scientific Applications Proceedings of SciDAC 2005 meeting June 26-30 2005 San Francisco

  832. Galip Aydin, Mehmet S. Aktas, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar SERVOGrid Complexity Computational Environments (CCE) Integrated Performance Analysis Proceedings of Grid Computing Conference , 2005. The 6th IEEE/ACM International Workshop 13-14 Nov. 2005. Page(s): 256 - 261 DOI

  833. Mehmet S. Aktas, Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar, Information Services for Grid/Web Service Oriented Architecture (SOA) Based Geospatial Applications , Technical Report, June, 2005

  834. Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate Technical Report May 2005

  835. Minjun Wang, Geoffrey Fox and Marlon Pierce General Collaboration Structures for Interactive Data Language Applications Technical Report May 2005

  836. Pete Burnap, Hasan Bulut, Shrideep Pallickara, Geoffrey Fox, David Walker, Ali Kaplan, Beytullah Yildiz, and Mehmet A. Nacar Worldwide Messaging Support for High Performance Real-time Collaboration UK e-Science All Hands Meeting September 2005

  837. Shrideep Pallickara, Geoffrey Fox and Hasan Bulut Fault Tolerant Reliable Delivery of Events in Distributed Middleware Systems Technical Report April 2005

  838. Hongbin Liu, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara A Multi-party Implementation of WS-SecureConversation Technical Report April 2005

  839. Geoffrey Fox Global Multimedia Collaboration System Tutorial Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA.PAGES 11-13 DOI

  840. Ahmet Uyar and Geoffrey Fox. Investigating the Performance of Audio/Video Service Architecture I: Single Broker Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA.PAGES 120-127 DOI

  841. Ahmet Uyar and Geoffrey Fox. Investigating the Performance of Audio/Video Service Architecture II: Broker Network. Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA. Pages 128-135 DOI

  842. Sangyoon Oh, Hasan Bulut, Ahmet Uyar, Wenjun Wu, Geoffrey Fox Optimized Communication using the SOAP Infoset For Mobile Multimedia Collaboration Applications Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA. Pages 32 - 39 DOI

  843. Minjun Wang, Geoffrey Fox and Marlon Pierce Instantiations of Shared Event Model in Grid-based Collaboration Proceedings of the 9th World Multi- Conference on Systemics, Cybernetics and Informatics July 10-13, 2005 - Orlando, Florida, USA

  844. Ahmet Sayar, Marlon Pierce, Geoffrey Fox OGC Compatible Geographical Information Services Technical Report (Mar 2005), Indiana Computer Science Report TR610

  845. Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox Cost Model and Adaptive Scheme for Publish/Subscribe Systems on Mobile Environments Springer-Verlag Lecture Notes in Computer Science 3516, pp. 275-278 in Proceedings of the 2nd International Workshop on Active and Programmable Grids Architectures and Components, APGAC05 as part of ICCS05 , Atlanta, GA, May 2005. DOI

  846. Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments Lecture Notes in Computer Science 3515, pp. 576-584 in Proceeding of the Wireless and Mobile Systems Workshop at ICCS 2005 , Atlanta, GA, May 2005. DOI

  847. Mehmet S. Aktas, Geoffrey Fox, Marlon Pierce Managing Dynamic Metadata as Context Istanbul International Computational Science and Engineering Conference (ICCSE2005) June 2005

  848. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Robert Granat A Scripting based Architecture for Management of Streams and Services in Real-time Grid Applications Proceedings of the IEEE/ACM Cluster Computing and Grid 2005 Conference (CCGrid 2005). Cardiff, UK May 2005 Pages 710-717. DOI

  849. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara HPSearch for Managing Distributed Services Work in Progress session at IEEE/ACM Cluster Computing and Grid 2005 Conference (CCGrid 2005 ). Cardiff, UK May 2005

  850. Tony Hey and Geoffrey Fox Grids and Web Services for e-Science Concurrency and Computation: Practice and Experience 17, 317-322, April 2005 DOI

  851. Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate Technical Report February 2005

  852. Mehmet Aktas, Galip Aydin, Andrea Donnellan, Geoffrey Fox, Robert Granat , Lisa Grant, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, Ahmet Sayar, and Terry Tullis iSERVO: Implementing the International Solid Earth Research Virtual Observatory by Integrating Computational Grid and Geographical Information Web Services Technical Report December 2004, Published in Special Issue of Pure and Applied Geophysics (PAGEOPH) for Beijing July 2004 ACES Meeting , Volume 163, Numbers 11-12 / December, 2006 DOI

  853. Wenjun Wu, Hasan Bulut, Ahmet Uyar, Geoffrey Fox Adapting H.323 Terminals in a Service-Oriented Collaboration System Special "Internet Media" issue of IEEE Internet Computing July-August 2005, Vol 9 number 4 pages 43-50 DOI

  854. Hongbin Liu, Shrideep Pallickara, Geoffrey Fox Performance of Web Services Security Proceedings of the 13th Annual 13th Mardi Gras Conference , February 3rd to 5th 2005, Baton Rouge, Louisiana

  855. Mehmet S. Aktas, Marlon Pierce, Geoffrey C. Fox, and David Leake A Web based Conversational Case-Based Recommender System for Ontology aided Metadata Discovery November 8, 2004. 5th IEEE/ACM International Workshop on Grid Computing (GRID 2004) DOI

  856. Minjun Wang, Geoffrey Fox and Marlon Pierce Grid-based Collaboration in Interactive Data Language Applications Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05) - Volume I pp. 335-341, April 4-6, 2005, Las Vegas DOI

  857. Shrideep Pallickara and Geoffrey Fox An Analysis of Notification Related Specifications for Web/Grid applications October 30 2004 and as a Short Paper in Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05), Volume II pages 762-763, April 4-6, 2005, Las Vegas DOI

  858. Shrideep Pallickara, Geoffrey Fox and Sangmi Lee Pallickara An Analysis of Reliable Delivery Specifications for Web Services in Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05), Volume I pp. 360-365. April 4-6, 2005, Las Vegas DOI

  859. Wenjun Wu, Ahmet Uyar, Hasan Bulut, Sangyoon Oh, Geoffrey Fox Grid Service Architecture for Videoconferencing to appear as chapter in book "Grid Computational Methods" Edited by M.P. Bekakos, G.A. Gravvanis and H.R. Arabnia

  860. Geoffrey Fox, Shrideep Pallickara, and Marlon Pierce Building a Grid of Grids: Messaging Substrates and Information Management to appear as chapter in book "Grid Technologies: Emerging from Distributed Architectures to Virtual Organizations" Editors: M.P. Bekakos, G.A. Gravvanis and H.R. Arabnia.

  861. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System Technical Report January 2005 and to be published in IEEE International Conference on Pervasive Services 2005 ( ICPS'05),11-14 July 2005, Santorini, Greece

  862. Geoffrey Fox and Marlon Pierce Web Service Grids for iSERVO International Workshop on Geodynamics: Observation, Modeling and Computer Simulation University of Tokyo Japan October 14 2004

  863. Geoffrey Fox and Marlon Pierce SERVO Earthquake Science Grid as a summary of iSERVO technology October 2004 in January 2005 report High Performance Computing Requirements for the Computational Solid Earth Sciences edited by Ron Cohen and started at May 2004 workshop on Computational Geoinformatics

  864. Xiaohong Qiu, Shrideep Pallickara, and Ahmet Uyar Making SVG a Web Service in a Message-based MVC Architecture SVGOpen Conference 2004 Tokyo September 2004. Original Abstract

  865. Minjun Wang and Geoffrey Fox Design of a Collaborative System for Open Office, Proceedings of IASTED KSCE Conference Virgin Islands November 2004

  866. Geoffrey Fox, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, John Rundle, Andrea Donnellan, Jay Parker, Robert Granat, Greg Lyzenga, Dennis McLeod and Anne Chen Complexity Computational Environments (CCE) Architecture NASA Technical Report September 2004

  867. Malcolm Atkinson, David DeRoure, Alistair Dunlop, Geoffrey Fox, Peter Henderson, Tony Hey, Norman Paton, Steven Newhouse, Savas Parastatidis, Anne Trefethen and Paul Watson. Web Service Grids: An Evolutionary Approach UK e-Science Technical Report July 13 2004 published in a special issue of Concurrency and Computation: Practice and Experience 17, 377-389, 2005. DOI

  868. Geoffrey Fox Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, Robert L. Grossman, Yunhong Gu, David Hanley, Xinwei Hong, Indiana University and University of Illinois at Chicago High Performance Data Streaming in Service Architecture Technical Report July 2004

  869. Ahmet Uyar, Wenjun Wu, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System Technical Report June 2004

  870. Harshawardhan Gadgil, Jin-Yong Choi, Bernie Engel, Geoffrey Fox, Sunghoon Ko, Shrideep Pallickara, Marlon Pierce Management of Data Streams for a Real Time Flood Simulation Technical Report June 2004

  871. D. Gannon, J. Alameda, O. Chipara, M. Christie, V. Dukle, L. Fang, M. Farrellee, G. Kandaswamy, D. Kodeboyina, S. Krishnan, C. Moad, M. Pierce, B. Plale, A. Rossi, Y. Simmhan, A. Sarangi, A. Slominski, S. Shirasuna, T. Thomas Building Grid Portal Applications from a Web-Service Component Architecture Proceedings of the IEEE March 2005 Volume: 93, Issue: 3 On page(s): 551- 563 DOI

  872. Geoffrey Fox Grids of Grids of Simple Services for CISE Magazine July/August 2004

  873. Jungkee Kim and Geoffrey Fox A Hybrid Keyword Search across Peer-to-Peer Federated databases Advances in Databases and Information Systems (ADBIS) 2004 Budapest Hungary September 22-25 2004

  874. Minjun Wang, Geoffrey Fox and Shrideep Pallickara NEW TOOLS IN EDUCATION The 7th IASTED International Conference on COMPUTERS AND ADVANCED TECHNOLOGY IN EDUCATION ~CATE 2004~ August 16-18, 2004 Kauai, Hawaii, USA

  875. Galip Aydin, Marlon Pierce, Geoffrey Fox, Mehmet Aktas and Ahmet Sayar Implementing GIS Grid Services for the International Solid Earth Research Virtual Observatory Extended abstract for Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop , Beijing China, July 13 2004

  876. Andrea Donnellan, Geoffrey Fox, Robert Granat, Lisa Grant, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, and Terry Tullis iSERVO: Implementing the International Solid Earth Research Virtual Observatory Extended abstract for Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop , Beijing China, July 13 2004

  877. Sangmi Lee, Geoffrey Fox Wireless Reliable Messaging Protocol for Web Services (WS -WRM) Proceedings of IEEE 2nd International Conference on Web Services (ICWS 2004) pages 350-357, San Diego July 2004 DOI

  878. Xiaohong Qiu Building Desktop Application with Web Services in a Message-based MVC Paradigm IEEE 2nd International Conference on Web Services (ICWS 2004) pages 765-769, San Diego July 2004 DOI

  879. Shrideep Pallickara and Geoffrey Fox Efficient Matching Of Events in Distributed Middleware Systems Journal Of Digital Information Management. Volume 2, Issue 2. pp 79-87. June 2004.Special Issue of selected papers from the IEEE ITCC 2004 Track on Modern Grid and Web Systems.

  880. Minjun Wang, Geoffrey Fox and Shrideep Pallickara Demonstrations of Collaborative Web Services and Peer-to-Peer Grids Journal Of Digital Information Management. Volume 2, Issue 2. June 2004.Special Issue of selected papers from the IEEE ITCC 2004 Track on Modern Grid and Web Systems.

  881. Hasan Bulut, Wenjun Wu, Geoffrey Fox, Ahmet Uyar, Shrideep Pallickara, Harun Altay A Web Services Based Streaming Gateway for Heterogeneous A/V Collaboration IC2004, The 5th International Conference on Internet Computing, Las Vegas June 2004

  882. Sang Boem Lim, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce. Web Service Robust GridFTP The 2004 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA04), Las Vegas June 2004

  883. Hasan Bulut, Shrideep Pallickara and Geoffrey Fox Implementing a NTP-Based Time Service within a Distributed Brokering System ACM International Conference on the Principles and Practice of Programming in Java, June 16-18, Las Vegas, NV

  884. Andrea Donnellan, Jay Parker, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod Complexity Computational Environment: Data Assimilation SERVOGrid 2004 Earth Science Technology Conference June 22 - 24 2004 Palo Alto

  885. Andrea Donnellan, Jay Parker, Greg Lyzenga, Robert Granat, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Lisa Grant, Terry Tullis The QuakeSim Project: Numerical Simulations for Active Tectonic Processes 2004 Earth Science Technology Conference June 22 - 24 Palo Alto

  886. Mehmet S. Aktas, Marlon Pierce, and Geoffrey C. Fox Designing Ontologies and Distributed Resource Discovery Services for an Earthquake Simulation Grid GGF-11 Global Grid Forum Semantic Grid Applications Workshop Hawaii June 10 2004

  887. John B. Rundle, Paul B. Rundle , Andrea Donnellan and Geoffrey Fox Gutenberg-Richter Statistics in Topologically Realistic System-Level Earthquake Stress-Evolution Simulations IUGG Hagiwara symposium on Monitoring and Modeling of Earthquake and Volcanic Processes for Prediction June 30 – July 11, 2003 in Sapporo, Japan; Earth Planets Space, Vol. 56 (No. 8), pp. 761-771, 2004

  888. Shrideep Pallickara and Geoffrey Fox A Scheme for Reliable Delivery of Events in Distributed Middleware Systems Proceedings of the IEEE International Conference on Autonomic Computing. ICAC'04 New York, NY. May 17-18 2004, pp. 328-329 DOI.

  889. Geoffrey Fox, Shrideep Pallickara and Savas Parastatidis Towards Flexible Messaging for SOAP Based Services Proceedings of the IEEE/ACM Supercomputing Conference SC04 November 2004. Pittsburgh, PA, page 8. DOI

  890. Geoffrey Fox and Shrideep Pallickara Deploying the NaradaBrokering Substrate in Aiding Efficient Web and Grid Service Interactions Invited paper for the Special Issue of the Proceedings of the IEEE on Grid Computing. Vol 93, No 3. pp 564-577. March 2005. DOI

  891. Geoffrey Fox The Rule of the Millisecond for CISE Magazine March/April 2004

  892. Minjun Wang, Geoffrey Fox and Shrideep Pallickara A Demonstration of Collaborative Web Services and Peer-to-Peer Grids Proceedings of IEEE ITCC2004 International Conference on Information Technology (Track on Methodologies, Technologies and Applications in Distributed and Grid Systems) Las Vegas April 5-7 2004

  893. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox An Efficient Scheme for Aggregation and Presentation of Network Performance in Distributed Brokering Systems to be published in Journal on Systemics, Cybernetics and Informatics 2004

  894. Xiaohong Qiu and Geoffrey Fox Building Desktop Application with Web Services in a Message-based MVC Paradigm Technical Report

  895. Marlon Pierce and Geoffrey Fox Scientific Applications as Web Services: A Simple Guide for CISE Magazine January/February 2004

  896. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Programming Support for High-Performance Grid-Enabled Applications Special issue on Parallel and Distributed Algorithms in Parallel Algorithms and Applications, Taylor and Francis, Volume 19, Number 2-3 / June-September, 2004 Pages: 175 - 193 DOI

  897. Mehmet A. Nacar, Marlon Pierce and Geoffrey C. Fox Developing a Secure Grid Computing Environment Shell Engine: Containers and Service Special issue on Grid computing in Journal of Neural Parallel and Scientific Computations (NPSC), Volume 12, pages 379-390, 2004

  898. Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Harun Altay Design and Implementation of a collaboration Web-services system Special issue on Grid computing in Journal of Neural Parallel and Scientific Computations (NPSC), Volume 12, pages 391-408 (2004).

  899. Summary of Community Grids Laboratory December 2003 or in PDF

  900. John B. Rundle, Paul B. Rundle, Andrea Donnellan and Geoffrey Fox Statistical Mechanics Approaches to the Modeling of Nonlinear Earthquake Physics conference proceedings of IUGG 03

  901. Geoffrey C. Fox, Wenjun Wu, Ahmet Uyar Hasan Bulut Design and Implementation of Audio/Video Collaboration System Based on Publish/subscribe Event Middleware Proceedings of CTS04 San Diego January 2004

  902. Shrideep Pallickara, Geoffrey Fox, Xi Rao, Ahmet Uyar and David Walker Performance of a possible Grid Messaging Infrastructure UK e-Science meeting on Grid Performance Edinburgh December 9 2002, Special Issue of Concurrency and Computation: Practice and Experience on Grid Performance. Concurrency and Computation: Practice and Experience, Vol. 17, No. 2-4. (February 2005), pp. 193-214. DOI or ACM Guide

  903. Amey Dharurkar, Shrideep Pallickara and Geoffrey Fox A Topology Viewer for Distributed Brokering Systems Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'04) April 2004.Volume I pp 228-234. DOI

  904. Shrideep Pallickara NaradaBrokering and its Applications SC03 Handout

  905. Mary Thomas, Marlon Pierce, Tomasz Haupt Building Interoperable Portals with Web Services Technical Report of ET011 Project October 2003

  906. Bryan Carpenter, Geoffrey Fox, Han-Ku Lee and Sang Boem Lim. Applications of HPJava In 16th International Workshop on Languages and Compilers for Parallel Computing, October 2003. Volume 2958 of Lecture Notes in Computer Science, 2003,

  907. Ozgur Balsoy, Ying Jin, Galip Aydin, Marlon Pierce and Geoffrey Fox Automating Metadata Web Service Deployment for Problem Solving Environments Special Issue of Future Generation Computer Systems Vol. 21, No. 6. (June 2005), pp. 910-919. DOI

  908. Geoffrey Fox PLANNING A NEW GENERATION OF MULTIPARTICLE PHASE SHIFT ANALYSES IN PERIPHERAL REACTIONS Proceedings of Jefferson Laboratory Workshop on Gluonic Excitations Newport News May 16 2003

  909. Geoffrey Fox, Sang Lim, Shrideep Pallickara, Marlon Pierce Message-Based Cellular Peer-to-Peer Grids: Foundations for Secure Federation and Autonomic Services in PEER-TO-PEER COMPUTING AND INTERACTION WITH GRIDS -- Special issue of Future Generation Computer Systems Vol. 21, No. 3. (March 2005), pp. 401-415. DOI

  910. Geoffrey Fox, Marlon Pierce Implications of Grids, e-Science and CyberInfrastructure for the DoD High Performance Computing Modernization Program Technical Report September 7 2003

  911. Geoffrey Fox, Shrideep Pallickara, Marlon Pierce and David Walker Towards Dependable Grid and Web Services ACM Ubiquity Volume 4, Issue 25. August, 2003. Towards dependable grid and web services Geoffrey Fox , Shrideep Pallickara , Marlon Pierce , David Walker Ubiquity, 2003 frames are not supported

  912. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-ku Lee, A Device Level Communication Library for the HPJava Programming Language in proceedings of the IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2003), November 3 to November 5, 2003, Marina Del Rey, CA. USA

  913. Geoffrey Fox Messaging Systems: Parallel Computing the Internet and the Grid EuroPVM/MPI 2003 Invited Talk September 30 2003. Published in Lecture Notes in Computer Science Publisher: Springer Berlin / Heidelberg ISSN: 0302-9743 Subject: Computer Science Volume 2840 / 2003 Title: Recent Advances in Parallel Virtual Machine and Message Passing Interface: 10th European PVM/MPI User's Group Meeting, Venice, Italy, September 29 - October 2, 2003, Proceedings Editors: Jack Dongarra, Domenico Laforenza, Salvatore Orlando ISBN: 3-540-20149-1, Chapter: pp. 1 - 9 DOI

  914. Geoffrey Fox, David Walker e-Science Gap Analysis June 30 2003 with 390 References Extracted

  915. Geoffrey Fox, David Walker Appendix to e-Science Gap Analysis June 30 2003

  916. Choonhan Youn, Marlon E. Pierce, and Geoffrey C. Fox Building Problem Solving Environments with Application Web Service Toolkits Special Issue of Future Generation Computer Systems Vol. 21, No. 6. (June 2005), pp. 856-867 DOI

  917. Geoffrey Fox Data and Metadata on the Semantic Grid for CISE Magazine September/October 2003

  918. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Efficient Compilation and Performance for HPC 7th World Multiconference on Systemics, Cybernetics and Informatics SCI 2003 July 27-30 2003 Orlando, Florida

  919. Galip Aydin, Harun Altay, Mehmet S. Aktas, M. Necati Aysan, Geoffrey Fox, Cevat Ikibas, Jungkee Kim, Ali Kaplan, Ahmet E. Topcu, Marlon Pierce, Beytullah Yildiz, Ozgur Balsoy Online Knowledge Center Tools for Metadata Management DoD HPCMP Users Group Meeting Seattle June 9-13 2003

  920. Sangyoon Oh, Geoffrey C. Fox , Sunghoon Ko GMSME: An Architecture for Heterogeneous Collaboration with Mobile Devices The Fifth IEEE International Conference on Mobile and Wireless Communications Networks (MWCN 2003) Singapore in September / October, 2003.

  921. Wenjun Wu, Hasan Bulut, Ahmet Uyar, Geoffrey C. Fox A WEB-SERVICES BASED CONFERENCE CONTROL FRAMEWORK FOR HETEROGENOUS A/V COLLABORATION 7th IASTED International Conference on INTERNET AND MULTIMEDIA SYSTEMS AND APPLICATIONS ~IMSA 2003~ August 13-15, 2003 Honolulu, Hawaii, USA

  922. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox An Integrated Videoconferencing System for Heterogeneous Multimedia Collaboration 7th IASTED International Conference on INTERNET AND MULTIMEDIA SYSTEMS AND APPLICATIONS ~IMSA 2003~ August 13-15, 2003 Honolulu, Hawaii, USA

  923. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, Hasan Bulut, Shrideep Pallickara A Web Services Framework for Collaboration and Videoconferencing or as submitted WACE 2003 Workshop on Advanced Collaborative Environments Seattle June 22 2003.

  924. Shrideep Pallickara, Marlon Pierce, Geoffrey Fox, Yan Yan, Yi Huang A Security Framework for Distributed Brokering Systems or here

  925. Shrideep Pallickara and Geoffrey Fox Efficient Support for Sophisticated Interactions between Entities in Distributed Brokering Systems or Lowering the Cost of Communication ACM Ubiquity Volume 4 Issue 16. June 2003. DOI Lowering the cost of computation Shrideep Pallickara , Geoffrey Fox Ubiquity, 2003

  926. Geoffrey Fox, Sunghoon Ko, Kangseok Kim, Sangmi Lee, and Sangyoon Oh Universal Accessible Collaboration Frameworks for Ubiquitous Computing Environments ICUC2003 in Seoul Korea 20-22 Oct

  927. Geoffrey Fox Integration of Computing and Information on Grids in CISE Magazine July/August 2003 DOI

  928. Mehmet Nacar, Marlon Pierce and Geoffrey Fox Designing a Grid Computing Environment Shell Engine in Proceedings of the 2003 International Conference on Internet Computing, Las Vegas June 2003

  929. Marlon Pierce and Geoffrey Fox Federated Grids and their Security -- a white paper

  930. Shrideep Pallickara and Geoffrey Fox On the Matching of Events in Distributed Brokering Systems Proceedings of IEEE ITCC Conference on Information Technology. April 2004. Volume II pp 68-76.

  931. Ahmet Uyar, Shrideep Pallickara and Geoffrey Fox Audio Video Conferencing in Distributed Brokering Systems in Proceedings of the 2003 International Conference on Communications in Computing, Las Vegas June 2003

  932. Shrideep Pallickara and Geoffrey Fox NaradaBrokering: A Distributed Middleware Framework and Architecture for Enabling Durable Peer-to-Peer Grids in Proceedings of ACM/IFIP/USENIX International Middleware Conference Middleware-2003, Rio Janeiro, Brazil June 2003, Springer Lecture Notes in Computer Science Volume 2672/2003 pages 998-999 DOI

  933. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Internet Collaboration using the W3C Document Object Model in Proceedings of the 2003 International Conference on Internet Computing, Las Vegas June 2003

  934. Wenjun Wu, Ahmet Uyar, Hasan Bulut, Geoffrey Fox Integration of SIP VoIP and Messaging with the AccessGrid and H.323 Systems , in Proceedings of 1st International Conference on Web Services Las Vegas June 2003

  935. Choonhan Youn, Marlon Pierce, and Geoffrey Fox Building Problem Solving Environments with Application Web Service Toolkits ICCS03 Australia June 2003

  936. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Collaborative SVG as a Web service updated to Longer Word Version or in official form in Proceedings of SVG Open Conference Vancouver July 2003

  937. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, Hasan Bulut, Shrideep Pallickara Global Multimedia Collaboration System in Proceedings of the 1st International Workshop on Middleware for Grid Computing co-located with Middleware 2003 on Tuesday, June 17, 2003 Rio de Janeiro, Brazil

  938. Ozgur Balsoy, Ying Jin, Galip Aydin, Marlon Pierce, and Geoffrey Fox Automating Metadata Web Service Deployment for Problem Solving Environments ICCS03 Melbourne Australia June 2-4 2003

  939. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Towards Programming Support for High-Performance Grid-Enabled Applications in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  940. Bryan Carpenter and Geoffrey Fox HPJava: A Data Parallel Programming Alternative for CISE Magazine May/June 2003

  941. Choonhan Youn, Marlon Pierce and Geoffrey Fox Developing Secure Web Services for Computational Portals in Proceeedings of 2003 International Conference on Security and Management (SAM'03: June 23-26, 2003, Las Vegas, Nevada, USA

  942. Ali Kaplan, Ahmet E. Topcu, Marlon Pierce, and Geoffrey Fox Access Control System Using Web Services for XML Messaging Systems in Proceedings of Information Knowledge Engineering (IKE 2003) Las Vegas June 2003

  943. Sangmi Lee, Sunghoon Ko, Geoffrey Fox, Adapting Content for Mobile Devices in Heterogeneous Collaboration Environments in Proceedings of the 2003 International Conference on Wireless Networks Las Vegas June 2003

  944. Sangmi Lee, Sunghoon Ko, Geoffrey Fox, Kangseok Kim, Sangyoon Oh A Web Service Approach to Universal Accessibility in Collaboration Services in Proceedings of 1st International Conference on Web Services Las Vegas June 2003

  945. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox A Portal Based Approach to Viewing Aggregated Network Performance Data in Distributed Brokering Systems in Proceedings of the 2003 International Conference on Internet Computing Las Vegas June 2003

  946. Marlon Pierce,Choonhan Youn, and Geoffrey Fox Interacting Data Services for Distributed Earthquake Modeling ACES Workshop at ICCS June 2003 Australia

  947. Yan Yan, Yi Huang, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara, Marlon Pierce and Ahmet Topcu Implementing a Prototype of the Security Framework for Distributed Brokering Systems in Proceeedings of 2003 International Conference on Security and Management (SAM'03: June 23-26, 2003, Las Vegas, Nevada, USA

  948. Shrideep Pallickara, Geoffrey Fox and Marlon Pierce Incorporating an XML Matching Engine in Distributed Brokering Systems in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  949. Shrideep Pallickara, Geoffrey Fox, John Yin, Gurhan Gunduz, Hongbin Liu, Ahmet Uyar, Mustafa Varank A Transport Framework for Distributed Brokering Systems in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  950. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox A Framework for Aggregating Network Performance in Distributed Brokering Systems Proceedings of the 9th International Conference on Computer, Communication and Control Technologies. CCCT '03 July-August 2003.Orlando Florida. This paper was selected as the best paper presented in the session: Computing / Information Systems and Technologies.

  951. Andrea Donnellan, Geoffrey Fox, John Rundle, Dennis McLeod, Terry Tullis, Lisa Grant Numerical Simulations for Active Tectonic Processes: Increasing Interoperability and Performance extended abstract for conference in Japan March 2003

  952. Geoffrey Fox and Marlon Pierce Grid Computing Environments Shells proposed GGF Information Document

  953. G.Fox, D. Gannon, M. Pierce, M. Thomas Overview of Grid Computing Environments proposed GGF Information Document

  954. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Collaborative Web services and the W3C Document Object Model technical report

  955. Geoffrey Fox Grid Computing Environments or in word for CISE Magazine March/April 2003

  956. Geoffrey Fox, Hasan Bulut, Kangseok Kim, Sung-Hoon Ko, Sangmi Lee, Sangyoon Oh, Shrideep Pallickara, Xiaohong Qiu, Ahmet Uyar, Minjun Wang, Wenjun Wu Collaborative Web Services and Peer-to-Peer Grids or in sxw presented at 2003 Collaborative Technologies Symposium ( CTS'03)

  957. Geoffrey Fox Grande Applications and Java or in sxw for CISE Magazine January/February 2003

  958. Geoffrey Fox, Sangmi Lee, Sunghoon Ko, Kangseok Kim, Sangyoon Oh, CAROUSEL Web service: Universal Accessible Web service Architecture for Collaborative Application November 2002

  959. Geoffrey Fox Multiparticle phase shift analysis in peripheral production experiments: Lessons from the Past Proceedings of Partial Wave Analysis Workshop, CMU June 2-4 2002 at http://www.curtismeyer.com/pwa_work/ International Journal of Modern Physics A, 18, 345-354, 2003

  960. Geoffrey Fox Message Passing: From Parallel Computing to the Grid for CISE Magazine September/October 2002

  961. Geoffrey Fox e-Science for CISE Magazine July/August 2002

  962. Geoffrey Fox, Dennis Gannon, Mary Thomas with A Summary of Grid Computing Environments July 2002 as a summary of a special issue of Concurrency and Computation: Practice and Experience with Home Page

  963. Jungkee Kim, Ozgur Balsoy, Marlon Pierce, and Geoffrey Fox Design of a Hybrid Search in the Online Knowledge Center is here . IASTED International Conference on Information and Knowledge Sharing (IKS 2002) November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  964. Galip Aydin, Ali Kaplan, Ahmet E. Topcu, Beytullah Yildiz, Ozgur Balsoy, Marlon Pierce, and Geoffrey Fox An XML Based System for Dynamic Message Content Creation, Delivery, and Control is here . IASTED International Conference on Information and Knowledge Sharing (IKS 2002) November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  965. Marlon Pierce, Choonhan Youn, Geoffrey Fox Application Web Services is here

  966. Geoffrey Fox, Dennis Gannon, Sung-Hoon Ko, Sangmi Lee, Shrideep Pallickara, Marlon Pierce, Xiaohong Qiu, Xi Rao, Ahmet Uyar, Minjun Wang, Wenjun Wu Book chapter on Peer-to-Peer Grids

  967. Hasan Bulut, Geoffrey Fox, Shrideep Pallickara,Ahmet Uyar and Wenjun Wu, Integration of NaradaBrokering and Audio/Video Conferencing as a Web Service is here . IASTED International Conference on Communications, Internet, and Information Technology, November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  968. Hasan Bulut, Geoffrey Fox, Dennis Gannon, Kangseok Kim, Sung-Hoon Ko, Sangmi Lee, Sangyoon Oh, Xi Rao, Shrideep Pallickara, Quinlin Pei, Marlon Pierce, Aleksander Slominski, Ahmet Uyar, Wenjun Wu, Choonhan Youn An Architecture for e-Science and its Implications to be presented at 2002 International Symposium on Performance Evaluation of Computer and Telecommunication Systems (SPECTS 2002) July 17 2002

  969. Marlon Pierce, Choonhan Youn, Ozgur Balsoy, Geoffrey Fox, Steve Mock, and Kurt Mueller Interoperable Web Services for Computational Portals . SC02 November 2002

  970. Steve Mock, Kurt Mueller, Marlon Pierce, Choonhan Youn, Geoffrey Fox, and Mary Thomas A Batch Script Generator Web Service for Computational Portals is here or as published

  971. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, and Hasan Bulut A Web Services Framework for Collaboration and Audio/Videoconferencing is here updated here

  972. Ozgur Balsoy, Mehmet S. Aktas, Galip Aydin, Mehmet N. Aysan, Cevat Ikibas, Ali Kaplan, Jungkee Kim, Marlon Pierce, Ahmet Topcu, Beytullah Yildiz, and Geoffrey Fox The Online Knowledge Center: Building a Component Based Portal is here . Proceedings of the International Conference on Information and Knowledge Engineering, 2002. Updated here

  973. Mehmet Aktas, Galip Aydin, Mehmet Necati Aysan, Ozgur Balsoy, Geoffrey Fox, Cevat Ikibas, Ali Kaplan, Jungkee Kim, Marlon Pierce, Ahmet Topcu, and Beytullah Yildiz Design Features and Technology Evaluations for the PET Online Knowledge Center is here

  974. Geoffrey Fox, Shrideep Pallickara and Xi Rao Scaleable Event Infrastructure for Peer to Peer Grids is here , JGI '02: Proceedings of the 2002 joint ACM-ISCOPE conference on Java Grande page 66-75.

  975. Geoffrey Fox and Shrideep Pallickara The Narada Event Brokering System: Overview and Extensions is here Proceedings of the 2002 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'02). CSREA Press (2002) edited by H.R. Arabnia Volume I pages 353-359

  976. Geoffrey Fox and Shrideep Pallickara JMS Compliance in the Narada Event Brokering System is here Proceedings of the 2002 International Conference on Internet Computing (IC-02). Volume 2 pp 391-397.

  977. Geoffrey Fox and Shrideep Pallickara Support for Peer-to-Peer Interactions in Web Brokering Systems is here ACM Ubiquity. Volume3 Issue 15. May 2002 Peer-to-peer interactions in web brokering systems Geoffrey Fox , Shrideep Pallickara Ubiquity, 2002

  978. SDSC (Steve Mock, Kurt Mueller), Indiana (Marlon Pierce, Choonhan Youn, Geoffrey Fox) and Texas (Mary Thomas) paper on A Batch Script Generator Web Service for Computational Portals is here

  979. Geoffrey Fox, Sung-Hoon Ko, Kangseok Kim, Sangyoon Oh, Sangmi Lee on Integration of Hand-Held Devices into Collaborative Environments is here updated as PDA_IC2002.pdf

  980. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim on Benchmarking HPJava: Prospects for Performance is here : submitted to Sixth Workshop on "Languages, Compilers, and Run-time Systems for Scalable Computers" (LCR 02)

  981. Geoffrey Fox, XML and the Importance of being an Object?, for CISE Magazine May/June 2002 is here

  982. Fox's Paper on From Computational Science to Internetics: Integration of Science with Computer Science, in Ronald F. Boisvert and Elias Houstis (eds.), Computational Science, Mathematics and Software, Purdue University Press, West Lafayette, Indiana, , ISBN 1-55753-250-8. Pages 217-236, July 2002.

  983. Technical Report on PDA Access to Garnet Collaboration System January 24 2002

  984. Marlon Pierce, Choonhan Youn, Geoffrey Fox, The Gateway Computational Portal: Developing Web Services for High Performance Computing , ICCS2002 Conference April 2002

  985. Paper on Community Grids Architecture prepared on January 21 2002 for ICCS2002 Conference April 2002

  986. Dennis Gannon's Talk on Programming the Grid: Distributed Software Components, P2P and Grid Web Services for Scientific Applications, GRID 2001, 2nd International Workshop on Grid Computing, Denver November 12 2001.

  987. Shrideep Pallickara and Geoffrey Fox paper on A Scalable Durable Grid Event Service.

  988. Shrideep Pallickara and Geoffrey Fox paper on An Approach to High Performance Distributed Web Brokering ACM Ubiquity Volume2 Issue 38. November 2001 Optimizing bandwidth Geoffrey Fox , Shrideep Pallickara Ubiquity, 2001

  989. Shrideep Pallickara and Geoffrey Fox paper on An Event Service to Support Grid Computational Environments, Concurrency and Computation: Practice and Experience. Special Issue on Grid Computing Environments. Volume 14(13-15) pp 1097-1129.

  990. Marlon. E. Pierce, Choonhan Youn, Geoffrey C. Fox paper on The Gateway Computational Web Portal to be published in Concurrency and Computation: Practice and Experience in Grid Computing environments Special Issue 2002;

  991. Community Grids paper on Grid Services for Earthquake Science, to be published in Concurrency and Computation: Practice and Experience in ACES Special Issue, 2002.

  992. Geoffrey Fox and Dennis Gannon, Computational Grids for CISE Magazine July/August 2001 is here

  993. Geoffrey Fox, Peer-to-Peer Networks, for CISE Magazine May/June 2001 is here

  994. Geoffrey Fox, Gurhan Gunduz and Ahmet Uyar Report on Audio-Video Conferencing Technology May 2001

  995. Geoffrey Fox report on Computational Science and Information Technology: Distance Education and Training May 2001

  996. Geoffrey Fox report on Ubiquitous Access for Computational Science and Education May 2001

  997. Geoffrey Fox report on Architecture and Implementation of a Collaborative Computing and Education Portal May 2001

  998. Fox, G.C., Ken Hurst, Andrea Donnellan, and Jay Parker with a shorter paper on An object web-based approach to Earthquake Simulations, a APEC Cooperation for Earthquake Simulation - 2nd ACES Workshop Proceedings: October 15-20 2000 Hakone and Tokyo Japan, edited by Mitsuhiro Matsu'ura, Kengo Nakajima and Peter Mora and published by GOPRINT, Brisbane in 2001, pp 495-502.

  999. Fox, G.C., Ken Hurst, Andrea Donnellan, and Jay Parker, with a long paper on Introducing a New Paradigm for Computational Earth Science - A web-object-based approach to Earthquake Simulations, a chapter in AGU monograph on "GeoComplexity and the Physics of Earthquakes" edited by John Rundle, Donald Turcotte and William Klein and published by AGU in 2000, pp 219-245

  1000. Geoffrey Fox, Introduction to Web Computing, for CISE Magazine March/April 2001 is here

  1001. Xiaohong Qiu, Flash Tutorial October 2000 in Word or HTML

  1002. Fox's Paper on Internetics: Technologies, Applications and Academic Fields Invited Chapter in Book :Feynman and Computation, edited by A.J.G. Hey, Perseus Books (1999).

  1003. Review of Collaborative Tools as of May 9 2001

  1004. Older References from 2001 and earlier

  1005. Object serialization for marshalling data in a Java interface to MPI Bryan Carpenter , Geoffrey Fox , Sung Hoon Ko , Sang Lim JAVA '99 Proceedings of the ACM 1999 conference on Java Grande, 1999

  1006. The gateway system: uniform Web based access to remote resources Geoffrey Fox , Tomasz Haupt , Erol Akarsu , Alexey Kalinichenko , Kang-Seok Kim , Praveen Sheethalnath , Choon-Han Youn JAVA '99 Proceedings of the ACM 1999 conference on Java Grande, 1999

  1007. Distributed information management in the National HPCC Software Exchange Shirley Browne , Jack Dongarra , Geoffrey C. Fox , Ken Hawick , Ken Kennedy , Rick Stevens , Robert Olson , Tom Rowan Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing (CDROM), 1995

  1008. The living textbook and the K–12 classroom of the future Kim Mills , Geoffrey Fox , Paul Coddington , Barbara Mihalas , Marek Podgorny , Barbara Shelly , Steven Bossert Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing (CDROM), 1995

  1009. A parallel Gauss-Seidel algorithm for sparse power system matrices D. P. Koester , S. Ranka , G. C. Fox Supercomputing '94 Proceedings of the 1994 ACM/IEEE conference on Supercomputing, 1994

  1010. Interpreting the performance of HPF/Fortran 90D Manish Parashar , Salim Hariri , Tomasz Haupt , Geoffrey C. Fox Supercomputing '94 Proceedings of the 1994 ACM/IEEE conference on Supercomputing, 1994

  1011. Fortran 90D/HPF compiler for distributed memory MIMD computers: design, implementation, and performance results Z. Bozkus , A. Choudhary , G. Fox , T. Haupt , S. Ranka Supercomputing '93 Proceedings of the 1993 ACM/IEEE conference on Supercomputing, 1993

  1012. An interactive remote visualization environment for an electromagnetic scattering simulation on high performance computing system G. Cheng , Y. Lu , G. Fox , K. Mills , T. Haupt Supercomputing '93 Proceedings of the 1993 ACM/IEEE conference on Supercomputing, 1993

  1013. Graph contraction for physical optimization methods: a quality-cost tradeoff for mapping data on parallel computers N. Mansour , R. Ponnusamy , A. Choudhary , G. C. Fox ICS '93 Proceedings of the 7th international conference on Supercomputing, 1993

  1014. Unified compilation of Fortran 77D and 90D Alok Choudhary , Geoffrey Fox , Seema Hiranandani , Ken Kennedy , Charles Koelbel , Sanjay Ranka , Chau-Wen Tseng ACM Letters on Programming Languages and Systems (LOPLAS), 1993

  1015. A static performance estimator to guide data partitioning decisions Vasanth Balasundaram , Geoffrey Fox , Ken Kennedy , Ulrich Kremer PPOPP '91 Proceedings of the third ACM SIGPLAN symposium on Principles and practice of parallel programming, 1991

  1016. Practical parallel supercomputing: examples from chemistry and physics G. C. Fox , P. Hipes , J. Salmon Supercomputing '89 Proceedings of the 1989 ACM/IEEE conference on Supercomputing, 1989

  1017. A universal concurrent algorithm for plasma particle-in-cell simulation codes P. C. Liewer , V. K. Decyk , J. M. Dawson , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1018. What have we learnt from using real parallel machines to solve real problems? G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1019. LU decomposition of banded matrices and the solution of linear systems on hypercubes D. W. Walker , T. Aldcroft , A. Cisneros , G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1020. Use of the hypercube for symbolic quantum chromodynamics A. Kolawa , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1021. The Flux-corrected transport algorithm on the NCUBE hypercube D. W. Walker , G. C. Fox , G. R. Montry C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1022. Piriform (Olfactory) cortex model on the hypercube J. M. Bower , M. E. Nelson , M. A. Wilson , G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1023. The prime factor non-binary discrete Fourier transform and use of Crystal_Router as a general purpose communication routine G. Aloisio , N. Veneziani , J. S. Kim , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1024. Optimal matrix algorithms on homogeneous hypercubes G. C. Fox , W. Furmanski , D. W. Walker C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1025. PC-CUBE, a personal computer based hypercube A. Ho , G. C. Fox , D. W. Walker , S. Snyder , D. Chang , S. Chen , M. Breaden , T. Cole C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1026. Hypercube algorithms for neural network simulation: the Crystal_Accumulator and the Crystal Router G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1027. Problems and approaches for a Teraflop processor A. H. Frey , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1028. Optimal communication algorithms for regular decompositions on the hypercube G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1029. A string theory for time dependent complex systems and its application to automatic decomposition G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1030. Load balancing loosely synchronous problems with a neural network G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1031. MAC-CUBE, the Macintosh-based hypercube A. Ho , G. C. Fox , D. W. Walker , M. Breaden , S. Chen , A. Knutson , S. Kuwamoto , T. Cole C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

Theses by Community Grids Laboratory and Digital Science Center Students

Last modified April 1, 2023: update pubs (5b694d7)