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1 - Projects

List of projects.

List of Projects.

1.1 - Cylon

Cylon: High-Performance Data Engineering Framework

One of the most exciting aspects of the Big Data era for both the industry and research communities is the incredible progress being made in the domains of the machine and deep learning. Modern applications demand resources that are more than a single node can supply. The difficulties that the total data processing environment must address include a variety of data engineering for pre- and post-data processing, communication, and system integration. The ability of data analytics tools to quickly interface with existing frameworks in a variety of languages is a crucial requirement as it increases user productivity and efficiency.All of this calls for an effective and widely dispersed integrated approach to data processing, yet many of today’s well-liked data analytics solutions are unable to simultaneously meet all of these criteria.

In this project, we introduce Cylon, a high-performance distributed data processing toolkit that is open-source and easily integrated with current Big Data and AI/ML frameworks. It has a compact data structure as the foundation, a versatile C++ core, and language bindings for Python, Java, and C++ on top of it.

We develop Cylon’s design and demonstrate how it can be used as a standalone framework or imported as a library into already-existing applications. Early tests reveal that Cylon boosts well-known technologies like Apache Spark and Dask with significant performance gains for crucial operations and improved component linkages. The ultimate goal is to demonstrate how Cylon’s design supports cross-platform usage with the least amount of overhead, which includes well-known AI tools like PyTorch, Tensorflow, and Jupyter notebooks.

1.2 - Cloudmask

Cloudmask

MLCommons Science Cloudmask benchmark

The scientific objective of CloudMask is to develop a segmentation model for classifying the pixels in satellite images. This classification allows to determine whether the given pixel belongs to a cloud or to a clear sky. The benchmark can be considered as both training and inference focused, where the science metric is same as the classification accuracy — number of pixels classified correctly. The performance metric, can be inference timing and scalability on the training across a number of GPUs.

Participants and Collaborators

Deliverables

  • Working code that can run benchmarks in parallel
  • Report
  • Submission of the benchmark to MLCommons

References

  1. https://github.com/mlcommons/science/tree/main/benchmarks/cloudmask

1.3 - Cosmoflow

Cosmoflow

High Performance Computing with the Cosmoflow Benchmark

CosmoFlow is a deep learning application that uses a convolutional neural network to predict the large-scale structure of the universe from cosmological simulations. Developed by researchers from Oak Ridge National Laboratory and NVIDIA, the project achieved a 4x speedup compared to traditional methods by leveraging GPUs and high-performance computing. CosmoFlow generates large datasets that researchers can analyze to gain insights into the evolution of the cosmos. The neural network is trained on 3D images generated by cosmological simulations, and the resulting datasets provide valuable information about the formation of galaxies, distribution of dark matter, and overall evolution of the universe. CosmoFlow enables faster and more efficient simulations, opening up new avenues of research in this area. The project has the potential to revolutionize cosmology research by enabling faster and more accurate simulations of the universe.

Deliverables

References

  1. MLcommons repository of cosmoflow, https://github.com/mlcommons/hpc/tree/main/cosmoflow
  2. DSC respository of cosmoflow, https://github.com/DSC-SPIDAL/mlcommons-cosmoflow

1.4 - Cylon on AWS

High Performance Data Engineering with Cylon on Amazon Web Services

High Performance Data Engineering with Cylon on Amazon Web Services

In recent years the data engineering discipline has been greatly impacted by Artificial Intelligence (AI) and Machine Learning (ML). The effect has ushered in research related to the speed, performance, and optimization of such processes [2]. To meet these ends, many frameworks have been proposed. One such framework is CylonData [1]. CylonData represents an architecture where performance critical operations are moved to a highly optimized library. Moreover, the architecture provides the capability to leverage the performance associated with in-memory data and distributed operations and data across processes, a key requirement related to processing large data engineering workloads at scale. Such benefits are realized, for example, in the conversion from tabular or table format to tensor format required for ML/DL or via the use of relational algebraic expressions such as joins, select, project, etc. More specifically Cylon is described as “a fast, scalable distributed memory data parallel library for processing structured data” [1]. While CylonData has focused on a MPI implementation using HPC ML resources, the research work here is to port this to a serverless compute infrastructure within AWS services such as AWS Lambda, ECS, EC2, Route 53, ALB, and EFS. Once this is completed we will be achieving two things. First, we will be showcasing this work will be available not only on HPC but also on AWS serverless and serverful compute resources. Second, we will be able to provide an extensive benchmark comparison between HPC and Serverless/Serverful Computing to showcase the strengths and weaknesses of both approaches.

Deliverables

Timeline

  • 1, April 2023: Merge of UCC/UCX Bootstrapping to cylondata/man
  • 25, April 2023: Execution of Serverful Cylon Delivered via ECS Infrastructure using OpenMPI
  • 10, May 2023: Prototype of Servlerless delivery of cylon library via AWS Lambda Layers
  • 30, May 2023: Serverless Cache infrastructure fascade prototype and support via abstraction in the cylon source

References

  1. “Cylon.” cylondata/cylon, https://github.com/cylondata/cylon/. Accessed 9 September 2022.

  2. “Cylon Library for Fast & Scalable Data Engineering.” Cylon Blog, https://supun-kamburugamuve.medium.com/cylon-library-for-fast-scalable-data-engineering-bf74742fe5d1. Accessed 9 September 2022.

1.5 - Data Compiler

Optimizing Large-Scale Deep Learning by Data Movement-Aware Compiler

Optimizing Large-Scale Deep Learning by Data Movement-Aware Compiler

Projet Members

Project Summary

This project aims to address the data movement, as a known major efficiency bottleneck of distributed training[1], by designing a tensor compiler[2] which can acquire and optimize the data movement graph and scheduling at the compilation time so that the execution becomes fully static for higher performance. Such Ahead-of-Time(AOT) optimization also enables opportunities for auto-parallelism and pipelining like [3, 5]. The current exploration is about leveraging Multi-Level Intermediate Representation (MLIR)[4] to include data movement information into the compilation passes.

Deliverables

  • Proposal: WIP
  • GitHub repo: not ready for open access
  • Report: TBD
  • Paper: TBD

Timeline

  1. 15 April 2023: Define a MLIR dialect which can describe data movement of deep learning
  2. 1 June 2023: Figure out the optimization over the dialect converting and lowering passes
  3. 15 July 2023: Prototype the backend code generation for real-world tests

Reference

  1. Ivanov, Andrei, et al. “Data movement is all you need: A case study on optimizing transformers.” Proceedings of Machine Learning and Systems 3 (2021): 711-732. available at https://arxiv.org/abs/2007.00072
  2. Kjolstad, Fredrik, et al. “The tensor algebra compiler.” Proceedings of the ACM on Programming Languages 1.OOPSLA (2017): 1-29. available at https://dl.acm.org/doi/10.1145/3133901
  3. Yuan, Jinhui, et al. “Oneflow: Redesign the distributed deep learning framework from scratch.” arXiv preprint. https://arxiv.org/abs/2110.15032
  4. Vasilache, Nicolas, et al. “Composable and modular code generation in MLIR: A structured and retargetable approach to tensor compiler construction.” arXiv preprint. https://arxiv.org/abs/2202.03293
  5. Zheng, Lianmin, et al. “Alpa: Automating Inter-and {Intra-Operator} Parallelism for Distributed Deep Learning.” 16th USENIX Symposium on Operating Systems Design and Implementation (OSDI 22). available at https://arxiv.org/abs/2201.12023

1.6 - NIST

NIST: Reusable Hybrid Multi-Services Data Analytics Framework

Over the last several years, the computation landscape for conducting data an- alytics has completely changed. While in the past a lot of the activities have been undertaken in isolation by companies and research institutions, today’s in- frastructure constitutes a wealth of services offered by a variety of providers that offer opportunities for reuse and interactions.

We will expand analytics services to focus on developing a frame- work for reusable hybrid multi-service data analytics. It includes (a) a technology review that explicitly targets the intersection of hybrid multi-provider analytics services (b) enhancing the concepts of services to showcase how hybrid, as well as multi-provider services, can be integrated and reused via the proposed framework, (d) address analytics service composition, and (c) integrate container technologies to achieve state-of-the-art analytics service deployment capabilities.

PI: Gregor von Laszewski, laszewski@gmail.com

1.7 - OSMI

OSMI

MLCommons OSMI Benchmark

OSMI-Bench explores the optimal deployment of machine-learned surrogate (MLS) models in rotorcraft aerodynamics on high-performance computers (HPC). In this benchmark, we test three rotorcraft models for optimal deployment configurations, including, Long Short Term Memory (LSTM), Convolutional Neural Network (CNN), and Temporal Convolutional Neural Network (TCNN) models with 2M, 44M, and 212M trainable parameters respectively [1]. Surrogate models trained on synthetic data were selected because we are solely focused on inference efficiency not model accuracy. We are now running the benchmark on the Rivanna HPC at the University of Virginia to find the optimal deployment scenario for each model, and we plan to develop more models to benchmark, such as a transformer-encoder natural language model. We are also investigating the relationship between batchsize, GPU, and concurrency and inference throughput/time. We will soon explore running the load balancers used in the OSMI-Bench framework, such as Python concurrent.futures threadpool, HAProxy and mpi4py, on Rivanna.

Deliverables

Timeline

  • 31 March 2023: Graph the relationship between configuration and inference performance for each model, complete OSMI-Bench documentation for Rivanna
  • 15 April: Run load balancer on Rivanna
  • 1 May 2023: Develop and benchmark new models

References

  1. Wes Brewer et al. “Production Deployment of Machine-Learned Rotorcraft Surrogate Models on HPC”, 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC), 15 November 2021, 10.1109/MLHPC54614.2021.00008, https://ieeexplore.ieee.org/document/9652868
  2. Wes Brewer, “OSMI-Bench”, https://code.ornl.gov/whb/osmi-bench

Participants

Nate Kimball, Wes Brewer, Gregor von Laszewski (laszewski@gmail.com), Geoffrey C. Fox

1.8 - Timeseries

Timeseries

Deep Learning Predictions for Hydrology Data

Here is the our research abstract: This research strives to approve that one can study several sets of sequences or time series of an underlying evolution operator using a deep learning network. The language of geospatial time series is used as a common application type, whereas the series can be any sequence, and the sequences can be in any collection (bag)-not just Euclidean space-time-as we need sequences labeled in some way, and having properties consequent of this label (position in abstract space). This problem has been successfully tackled by deep learning in many ways and within numerous research fields. The most advanced work is estimated to be Natural Language processing and transportation (ride-hailing). The second case, with traffic and the number of people needing rides, is a geospatial problem with significant constraints from the spatial locality. As in many problems, the data here is typically space-time-stamped events. However, these can be converted into spatial time series by binning in space and time. Comparing deep learning for such time series with coupled ordinary differential equations used to describe multi-particle systems motivates the introduction of an evolution operator that describes the time dependence of complex systems. With an appropriate training process, our research interprets deep learning applied to spatial time series as a particular approach to finding the time evolution operator for the complex system giving rise to the spatial time series. Whimsically we view this training process as determining hidden variables that represent the theory (as in Newton’s laws) of the complex system. This problem is formulated in general and presents an open-source package FFFFWNPF as a Jupyter notebook for training and inference using either recurrent neural networks or a variant of the transformer (multi-headed attention) approach. This assumes an outside data engineering step that can prepare data to ingest into FFFFWNPF. The approach, a comparison of transformer and LSTM networks are presented for time series of Hydrology streamflow, temperature, and precipitation data collected on 671 catchments from each nation: the US, the UK, and Chile. This research is intended to explore how complex systems of different types (different membership linkages) are described by different types of deep learning operators. Geometric structure in space and multi-scale behavior in both time and space will be important. We predict that the current forecasting formulation will be easily extended to sequence-to-sequence problems.

Participants

Deliverables

  1. GitHub repo: TBD
  2. Paper: TBD

References

  1. Newman, A. & Clark, M. & Sampson, Kevin & Wood, A. & Hay, Lauren & Bock, Andy & Viger, Roland & Blodgett, David & Brekke, Levi & Arnold, Jeffrey & Hopson, Thomas & Duan, Qingyun. (2015). Development of a large-sample watershed-scale hydrometeorological data set for the contiguous USA: Data set characteristics and assessment of regional variability in hydrologic model performance. Hydrology and Earth System Sciences. 19. 209-223. 10.5194/hess-19-209-2015.
  2. Alvarez-Garreton, Camila & Mendoza, Pablo & Boisier, Juan P. & Addor, Nans & Galleguillos, Mauricio & Zambrano-Bigiarini, Mauricio & Lara, Antonio & Puelma, Cristobal & Cortés, Gonzalo & Garreaud, Rene & Mcphee, James & Ayala, Álvaro. (2018). The CAMELS-CL dataset: Catchment attributes and meteorology for large sample studies-Chile dataset. Hydrology and Earth System Sciences. 22. 5817-5846. 10.5194/hess-22-5817-2018.
  3. Coxon, G. & Addor, Nans & Bloomfield, John & Freer, Jim & Fry, Matt & Hannaford, Jamie & Howden, Nicholas & Lane, Rosanna & Lewis, Melinda & Robinson, Emma & Wagener, Thorsten & Woods, Ross. (2020). CAMELS-GB: hydrometeorological time series and landscape attributes for 671 catchments in Great Britain. Earth System Science Data. 12. 2459-2483. 10.5194/essd-12-2459-2020.
  4. Sit, Muhammed & Demiray, Bekir & Xiang, Zhongrun & Ewing, Gregory & Sermet, Yusuf & Demir, Ibrahim. (2020). A comprehensive review of deep learning applications in hydrology and water resources. Water Science and Technology. 82. 10.2166/wst.2020.369.
  5. Fox, Geoffrey & Rundle, John & Donnellan, Andrea & Feng, Bo. (2021). Earthquake Nowcasting with Deep Learning. 10.13140/RG.2.2.27588.14722.
  6. Vaswani, Ashish & Shazeer, Noam & Parmar, Niki & Uszkoreit, Jakob & Jones, Llion & Gomez, Aidan & Kaiser, Lukasz & Polosukhin, Illia. (2017). Attention Is All You Need.
  7. Huang, Xinyuan & Fox, Geoffrey & Serebryakov, Sergey & Mohan, Ankur & Morkisz, Pawel & Dutta, Debojyoti. (2019). Benchmarking Deep Learning for Time Series: Challenges and Directions. 5679-5682. 10.1109/BigData47090.2019.9005496.

2 - Publications

Publications

Publications pages.

2.1 - 2021-present

Publications

Books and bookchapters

  1. Artificial Intelligence for Science: A Deep Learning Revolution, https://doi.org/10.1142/13123, 2023, Edited By: Alok Choudhary (Northwestern University, USA), Geoffrey Fox (University of Virginia, USA) and Tony Hey (Rutherford Appleton Laboratory, UK). World Scientific Publishing. https://www.worldscientific.com/worldscibooks/10.1142/13123#t=aboutBook

  2. Pete Beckman, Jack Dongarra, Nicola Ferrier, Geoffrey Fox, Terry Moore, Dan Reed, Micah Beck, “Harnessing the Computing Continuum for Programming Our World”, Technical Report March 11 2019 published in “Fog Computing: Theory and Practice” published by Wiley and edited by Albert Zomaya  Assad Abbas  Samee Khan, DOI 25 April 2020 http://infomall.org/publications/paper_computing_continuum-2.pdf DOI

Lecture Notes and course

  1. Cybertraining rehosting and update of previous and current classes. https://cybertraining-dsc.github.io/

Open Source Software and Resources: Current

  1. FFFFWNPF Deep Learning model for time series https://www.researchgate.net/deref/https%3A%2F%2Fcolab.research.google.com%2Fdrive%2F1dUwrxlUq8G8HHTzImJXmJ9qiUFabdIKf%3Fusp%3Dsharing
  2. Cylon “Data Engineering Everywhere” https://github.com/cylondata/cylon/releases/ with tutorial
  3. Twister2 high performance data analytics hosting environment that can work in both cloud and HPC environments https://github.com/DSC-SPIDAL/twister2/releases released May 10 2019 with extensive tutorial.
  4. SPIDAL Github https://github.com/DSC-SPIDAL data analytics library. This is being federated with all software from SPIDAL NSF Dibbs project
  5. WebPlotViz 3D point viewer including time series https://spidal-gw.dsc.soic.indiana.edu/. This replaces Plotviz 3D software below
  6. Cloudmesh DevOps Software originally developed for FutureGrid. Now for NIST and SDSC.
  7. MSI-CIEC Portal for outreach to Minority Serving Institutions
  8. eHumanity cultural portal developed for AIHEC the American Indian Higher Education Consortium with NEH (National Endowment for Humanities) funding

Publications

  1. Arup Kumar Sarker, Md. Khairul Islam, Yuan Tian, Geoffrey Fox, “MVAM: Multi-variant Attacks on Memory for IoT Trust Computing”, SafeThings 2023, IEEE/ACM Workshop on the Internet of Safe Things San Antonio, Texas USA, May 9, 2023
  2. J Quetzalcoatl Toledo-Marin, James A Glazier, Geoffrey Fox, “Analyzing the Performance of Deep Encoder-Decoder Networks as Surrogates for a Diffusion Equation”, https://arxiv.org/abs/2302.03786 submitted to Machine Learning: Science and Technology, March 3, 2023.
  3. Niranda Perera, Arup Kumar Sarker, Mills Staylor, Gregor von Laszewski, Kaiying Shan, Supun Kamburugamuve, Chathura Widanage, Vibhatha Abeykoon, Thejaka Amila Kanewela, Geoffrey Fox “In-depth Analysis On Parallel Processing Patterns for High-Performance Dataframes “ Submitted to PPAM Conference 2022 Special Issue in FGCS, Elsevier, February 27, 2023
  4. David Grzan, John B Rundle, Geoffrey C Fox, Andrea Donnellan, “Forecasting tsunami inundation with convolutional neural networks for a potential Cascadia Subduction Zone rupture”. Authorea. February 09, 2023. DOI: 10.22541/essoar.167591125.50103833/v1
  5. EA Huerta, Ben Blaiszik, L Catherine Brinson, Kristofer E Bouchard, Daniel Diaz, Caterina Doglioni, Javier M Duarte, Murali Emani, Ian Foster, Geoffrey Fox, Philip Harris, Lukas Heinrich, Shantenu Jha, Daniel S Katz, Volodymyr Kindratenko, Christine R Kirkpatrick, Kati Lassila-Perini, Ravi K Madduri, Mark S Neubauer, Fotis E Psomopoulos, Avik Roy, Oliver Rübel, Zhizhen Zhao, Ruike Zhu, “FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective”, Scientific Data, October 13, 2022, https://arxiv.org/abs/2210.08973, Proceedings of FAIR for AI Workshop held at Argonne National Laboratory on June 7, 2022.
  6. J. B. Rundle, A. Donnellan, G. Fox, L. Grant Ludwig, and J. P. Crutchfield, “Does the Catalog of California Earthquakes, with Aftershocks Included, Contain Information about Future Large Earthquakes?,” Earth and Space Science Open Archive, p. 18, 2022, https://doi.org/10.1002/essoar.10512008.4, arXiv:2208.03839
  7. J. B. Rundle, J. Yazbeck, A. Donnellan, and L. Grant Ludwig, “Optimizing Earthquake Nowcasting with Machine Learning: The Role of Strain Hardening in the Earthquake Cycle,” Earth and Space Science Open Archive. 2022 https://www.essoar.org/doi/abs/10.1002/essoar.10510940.4, Volume10, Issue2, February 2023, e2022EA002521 https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2022EA002521
  8. G. Fox, J. Rundle, A. Donnellan, and B. Feng, “Earthquake Nowcasting with Deep Learning,” arXiv [physics.geo-ph], 18-Dec-2021 [Online]. Available: http://arxiv.org/abs/2201.01869, GeoHazards 3 (2), 199-226 (2022)
  9. V. Abeykoon, S. Kamburugamuve, C. Widanage, N. Perera, A. Uyar, T. A. Kanewala, G. von Laszewski, and G. Fox, “HPTMT Parallel Operators for High Performance Data Science and Data Engineering,” Frontiers in Big Data, vol. 4, 2022 [Online]. Available: https://www.frontiersin.org/article/10.3389/fdata.2021.756041
  10. J. Thiyagalingam, M. Shankar, G. Fox, and T. Hey, “Scientific Machine Learning Benchmarks,” arXiv [cs.LG], 25-Oct-2021 [Online]. Available: http://arxiv.org/abs/2110.12773, Nature Reviews Physics 4 (6), 413-420
  11. E. Garyfallidis, S. Koudoro, J. Guaje, M.-A. Côté, S. Biswas, D. Reagan, N. Anousheh, F. Silva, G. Fox, and Fury Contributors, “FURY: advanced scientific visualization,” J. Open Source Softw., vol. 6, no. 64, p. 3384, Aug. 2021 [Online]. Available: https://joss.theoj.org/papers/10.21105/joss.03384
  12. J. B. Rundle, A. Donnellan, G. Fox, J. P. Crutchfield, and R. Granat, “Nowcasting Earthquakes: Imaging the Earthquake Cycle in California with Machine Learning,” Earth and Space Science, 8(12), 2021. https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2021EA001757
  13. J. B. Rundle, A. Donnellan, G. Fox, and J. P. Crutchfield, “Nowcasting Earthquakes by Visualizing the Earthquake Cycle with Machine Learning: A Comparison of Two Methods,” Surveys in Geophysics 43 (2), 483-501. https://doi.org/10.1007/s10712-021-09655-3
  14. A. Uyar, G. Gunduz, S. Kamburugamuve, P. Wickramasinghe, C. Widanage, K. Govindarajan, N. Perera, V. Abeykoon, S. Akkas, and G. Fox, “Twister2 Cross‐platform resource scheduler for big data,” Concurr. Comput., Jul. 2021 [Online]. Available: https://onlinelibrary.wiley.com/doi/10.1002/cpe.6502 and 34 (9), e6502
  15. John B. Rundle, Andrea Donnellan, Geoffrey Fox, James P Crutchfield, Robert A Granat, “Nowcasting Earthquakes: Imaging the Earthquake Cycle in California with Machine Learning”, Earth and Space Science Open Archive,  28 Mar 2021, DOI 10.1002/essoar.10506614.1, https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2021EA001757
  16. Vibhatha Abeykoon  Geoffrey Fox  Minje Kim  Saliya Ekanayake  Supun Kamburugamuve  Kannan Govindarajan  Pulasthi Wickramasinghe  Niranda Perera  Chathura Widanage  Ahmet Uyar  Gurhan Gunduz  Selahatin Akkas, “Stochastic gradient descent‐based support vector machines training optimization on Big Data and HPC frameworks”, published in Concurrency and Computation: Practice and Experience: 30 March 2021and 34 (8), e6292 (2022). https://doi.org/10.1002/cpe.6292
  17. Quetzalcóatl Toledo-Marín, J; Fox, Geoffrey; Sluka, James P; Glazier, James A, “Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations” February 10, 2021 Front. Physiol., vol. 12, p. 667828, Jun. 2021 [Online]. Available: http://dx.doi.org/10.3389/fphys.2021.667828, Arxiv Researchgate
  18. Thanh Nguyen, Tongbin Zhang, Geoffrey Fox, Sisi Zeng, Ni Cao, Chuandi Pan, Jake Y. Chen, “Linking Clinotypes to Phenotypes and Genotypes from Laboratory Test Results in Comprehensive Physical Exams” BMC Medical Informatics and Decision Making volume 21, Article number: 51 (2021). DOI  Researchgate February 24, 2021
  19. H. He, W. Zhao, S. Huang, G. C. Fox, and Q. Wang, “Research on the Architecture and its Implementation for Instrumentation and Measurement Cloud,” IEEE Trans. Serv. Comput., vol. 13, no. 5, pp. 944–957, 2020 [Online]. Available: http://dx.doi.org/10.1109/TSC.2017.2723006

Conference Papers

  1. Jeyan Thiyagalingam, Gregor von Laszewski, Junqi Yin, Murali Emani, Juri Papay, Gregg Barrett, Piotr Luszczek, Aristeidis Tsaris, Christine Kirkpatrick, Feiyi Wang, Tom Gibbs, Venkatram Vishwanath, Mallikarjun Shankar, Geoffrey Fox, Tony Hey, “AI Benchmarking for Science: Efforts from the MLCommons Science Working Group “,High Performance Computing. ISC High Performance 2022 International Workshops: Hamburg, Germany, May 29–June 2, 2022, Revised Selected Papers, pages 47-64, Springer, January 4, 2023 2. Kaiying Shan, Niranda Perera, Damitha Lenadora, Tianle Zhong, Arup Sarker, Supun Kamburugamuve, Thejaka Amila Kanewela, Chathura Widanage, Geoffrey Fox, “Hybrid Cloud and HPC Approach to High-Performance Dataframes”, https://arxiv.org/abs/2212.13732, Scalable Cloud Data Management Workshop at IEEE Big Data Conference 2022.
  2. John B Rundle, Andrea Donnellan, Geoffrey Fox, James P Crutchfield, Lisa Grant Ludwig, “Earthquake Nowcasting with Machine Learning: Analyzing the Information Content of Earthquake Catalogs for Scenario Earthquakes” December 15, 2022 AGU Fall Meeting 2022
  3. J. Alameda, C. Stirm, G. Bauer, T. Boerner, B. Bode, M. Dahan, W. Gropp, M. Pierce, C. Yewdall, M. Zentner, G. Fox and Others, “Informing Design: Exploring Community Use of GPU Resources for NCSA’s Delta System: Interview Highlights,” Gateways 2022 Conference, San Diego 18-20 October 2022.
  4. X. H. Sun, C. Z. Xu, G. Fox, and S. Chen, “Editorial for 2022 International Conference on High Performance Big Data and Intelligent Systems (HPBD&IS),” HPBD&IS
  5. J. Rundle, A. Donnellan, G. Fox, and J. Crutchfield, “Nowcasting Earthquakes in Southern California with Machine Learning: Correlations with Regional Tectonic Stress,” 2021, vol. 2021, AGU Fall Meeting Abstracts 2021, T53B-06. https://ui.adsabs.harvard.edu/abs/2021AGUFM.T53B..06R
  6. X. H. Sun, C. Z. Xu, G. Fox, W. Li, and K. Ye, “Editorial for 2021 International Conference on High Performance Big Data and Intelligent Systems (HPBD&IS),” HPBD&IS International Conference, 2021 https://ieeexplore.ieee.org/abstract/document/9658450/
  7. S. Farrell, M. Emani, J. Balma, L. Drescher, A. Drozd, A. Fink, G. Fox, D. Kanter, T. Kurth, P. Mattson, D. Mu, A. Ruhela, K. Sato, K. Shirahata, T. Tabaru, et al., “MLPerfTM HPC: A Holistic Benchmark Suite for Scientific Machine Learning on HPC Systems,” in 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC), 2021, pp. 33–45 [Online]. Available: http://dx.doi.org/10.1109/MLHPC54614.2021.00009
  8. B. Feng and G. C. Fox, “Spatiotemporal Pattern Mining for Nowcasting Extreme Earthquakes in Southern California,” in Proceedings of 2021 IEEE 17th International Conference on eScience, Innsbruck, Austria, 2021, pp. 99–107.
  9. S. Kamburugamuve, C. Widanage, N. Perera, V. Abeykoon, A. Uyar, T. A. Kanewala, G. von Laszewski, and G. Fox, “HPTMT: Operator-based architecture for scalable high-performance data-intensive frameworks,” in Proceedings of 2021 IEEE Cloud, Virtual, 2021 [Online]. Available: http://arxiv.org/abs/2107.12807
  10. G. von Laszewski, F. Wang, and G. C. Fox, “Comprehensive evaluation of XSEDE’s scientific impact using semantic scholar data,” in PEARC21 Practice and Experience in Advanced Research Computing, Boston MA USA, 2021 [Online]. Available: https://dl.acm.org/doi/10.1145/3437359.3465601
  11. Gregor von Laszewski , Anthony Orlowski , Richard H. Otten , Reilly Markowitz , Sunny Gandhi , Adam Chai , Geoffrey C. Fox and Wo L. Chang, “Using GAS for Speedy Generation of Hybrid Multi-Cloud Auto Generated AI Services” December 8, 2020 Preprint accepted for COMPSAC 2021: Intelligent and Resilient Computing for a Collaborative World 45th Anniversary Conference All-Virtual July 12-16, 2021 http://infomall.org/publications/vonLaszewski-openapi.pdf
  12. Y. Wang, M. Xu, J. Paden, L. Koenig, G. Fox, and D. Crandall, “Deep Tiered Image Segmentation for Detecting Internal Ice Layers in Radar Imagery,” in Proceedings of 2021 IEEE International Conference on Multimedia and Expo (ICME), 2021, pp. 1–6 [Online]. Available: http://arxiv.org/abs/2010.03712
  13. Pulasthi Wickramasinghe, Geoffrey Fox, “Multidimensional Scaling for Gene Sequence Data with Autoencoders”, Best paper award at Data Science conference CONF-CDS 2021 January 28 2021 Stanford online. 2021 2nd International Conference on Computing and Data Science (CDS), 2021, pp. 516-523, doi: 10.1109/CDS52072.2021.00095 http://infomall.org/publications/Multidimensional%20Scaling%20for%20Gene%20Sequence%20data%20with%20Autoencoders.pdf
  14. Niranda Perera, Vibhatha Abeykoon, Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Pulasthi Wickramasinghe, Ahmet Uyar, Hasara Maithree, Damitha Lenadora, Geoffrey Fox, “A Fast, Scalable, Universal Approach For Distributed Data Aggregations”, International Workshop on Big Data Reduction held with 2020 IEEE International Conference on Big Data Atlanta, GA December 10,2020 http://infomall.org/publications/cylon_aggregates_iwbr20.pdf

Technical reports

  1. Niranda Perera, Kaiying Shan, Supun Kamburugamuwe, Thejaka Amila Kanewela, Chathura Widanage, Arup Sarker, Mills Staylor, Tianle Zhong, Vibhatha Abeykoon, Geoffrey Fox, “Supercharging Distributed Computing Environments For High Performance Data Engineering” https://arxiv.org/pdf/2301.07896.pdf January 19, 2023
  2. Gregor von Laszewski, JP Fleischer, Geoffrey C Fox, “Hybrid Reusable Computational Analytics Workflow Management with Cloudmesh”, October 30, 2022, https://arxiv.org/pdf/2210.16941.pdf
  3. B. Feng and G. Fox, “GTrans: Spatiotemporal Autoregressive Transformer with Graph Embeddings for Nowcasting Extreme Events,” arXiv [cs.LG], 18-Jan-2022 [Online]. Available: https://arxiv.org/pdf/2201.06717.pdf

Presentations

Several largely virtual talks were given describing this project and how the community can work with MLCommons. This included presentations on refinements of our contributed earthquake forecasting benchmark. The links are recorded in products and include

  1. “Science part of MLCommons Community Meeting,” July 15, 2021. MLCommons Community Meeting. Online
  2. “Study of Earthquakes with Machine Learning,” 22 July 2021. Online presentation to Frankfurt Institute for Advanced Studies.
  3. “HPTMT High-Performance Data Science and Data Engineering based on Data-parallel Tensors, Matrices, and Tables, Slide 37 onwards” July 26, 2021. HPC 2021. Cetraro, Italy
  4. “Study of Earthquakes with Deep Learning,” July 27, 2021. HPC 2021. Cetraro, Italy.
  5. “Research at Intersection of Deep Learning (AI), High Performance Computing and Scientific Data Analysis”, August 27, 2021, University of Virginia Student Class. Computer Science Department
  6. “Study of Earthquakes with Deep Learning,” September 27, 2021. Frankfurt Institute for Advanced Study Seismology & Artificial Intelligence Kickoff Workshop
  7. “Science Working Group at MLCommons Research,” December 9, 2021. MLCommons Community Meeting. online
  8. “Deep Learning for Geospatial Time Series,” December 10, 2021. 12th International Symposium on Parallel Architectures, Algorithms and Programming (PAAP’21)
  9. “MLCommons Benchmarks,” January 20, 2022. University of Virginia Data Science Event.
  10. “AI for Science illustrated by Deep Learning for Geospatial Time Series,” January 27, 2022. The IEEE 12th Annual Computing and Communication Workshop and Conference (CCWC2022)
  11. “AI Driven Systems: Supercomputers and Clouds”, Thoughtworks e4r Symposium on theme Beyond Moore’s Law, February 19 2022 (zoom)
  12. “SBI: Surrogate Benchmark Initiative. FAIR Surrogate Benchmarks Supporting AI and Simulation Research”, June 7, 2022, FAIR for AI Workshop. Argonne and Online
  13. “Deep Learning for Earthquake Nowcasting,” July 5, 2022. HPC 2022 High Performance Computing, State Of The Art, Emerging Disruptive Innovations And Future Scenarios. Cetraro, Italy.
  14. “Science part of MLCommons Community Meeting,” July 14, 2022. MLCommons Community Meeting NVIDIA HQ Santa Clara, CA
  15. “Deep Learning for Science,” July 21, 2022. REU Undergraduate Presentation. online.
  16. “Advancing Science with AI from the Edge to the Datacenter,” August 3, 2022, Middleware and Grid Interagency Coordination (MAGIC) Meeting by zoom
  17. “AI for Science Patterns”, September 8, 2022, Workshop on Clusters, Clouds, and Data for Scientific Computing CCDSC 2022 Lyons, France
  18. “Algorithms and Systems Enabling AI for Science,” September 20, 2022, CS6190 University of Virginia Class
  19. “Science part of MLCommons Community Meeting,” September 22, 2022. MLCommons Community Meeting (zoom)
  20. “Algorithms and Systems Enabling AI for Science,” October 25, 2022, E500 Indiana University Class
  21. “ NSF HDR² : From Harnessing the Data Revolution to Harvesting the Data Revolution” PI meeting Washington DC: Data and Cyberinfrastructure Panel October 26 2022
  22. “Enabling AI for Science,” November 14, 2022, Keynote at AI4S Workshop SC22 Dallas
  23. ‘MLCommons Science Working Group.’ at SC22 Birds of a Feather November 16, 2022 Dallas
  24. “Surrogate Benchmark Initiative,” Department of Energy Presentation November 28 2022 (zoom)
  25. “Performance: Deep Learning, Data Engineering, and Systems (MLSys)” Systems Meeting December 2, 2022, University of Virginia
  26. “Science part of MLCommons Community Meeting,” December 8, 2022. MLCommons Community Meeting (zoom)
  27. “Algorithms and Systems Enabling AI for Science”. The 23rd International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT’22), December 7-9, 2022, Sendai, Japan

Theses by Community Grids Laboratory and Digital Science Center Students

2.2 - Memories

Selected Publications 1967-1990

Past Publications from Fox

  1. Fox, G. C. “Characteristic Features of the Scattering of Elementary Particles Arising from Their Spin and Electromagnetic Interaction,” Ph.D. Dissertation, Cambridge, England (1967).
  2. Phenomenology in Particle Physics, 1971, (with C. B. Chiu, G. Fox and A. J. G. Hey), Proceedings of a conference at Caltech (organized by C. B. Chiu and G. C. Fox) in 1971. See also Caltech copy
  3. Geoffrey Fox, Manxcat: Fortran non-linear solver with Marquardt's method used for Fermilab E350. LBL 7600 Compilation October 19, 1978
  4. Geoffrey Fox, Papoose Data Analysis Environment used for Fermilab E110, E260, E350. LBL 7600 Compilation October 19, 1978
  5. Fox, G. C. and Otto, S., Algorithms for Concurrent Processors, Physics Today, May 1984. Translated into Japanese in Nikkei Electronics, July, 1985, Caltech report C3P(HM for Homogenous Machine)-71.
  6. Fox, G. C., Hey, A. and Otto, S., Matrix Algorithms on the Hypercube I: Matrix Multiplication, Parallel Computing, 4, 17 (1987), Caltech report C3P-206.
  7. Fox, G. C., Domain Decomposition in Distributed and Shared Memory Environment-I: A Uniform Decomposition and Performance Analysis for the NCUBE and JPL Mark IIIfp Hypercubes, Supercomputing, June 8-12, 87, Athens, Greece. Published in Lecture Notes in Computer Science, edited by E. N. Houstis, T. S. Papatheodorou, and C. D. Polychronopoulos, Springer-Verlag (1987), Vol. 297, 1042-1073, Caltech report C3P-392.
  8. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: Introduction”, Caltech around 1975, taken from Ph129A
  9. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: A Differential Equations”, Caltech around 1975
  10. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: B Vectors, Matrices, and Functional Analysis. Application to Integral transforms and Differential and Integral Equations”, Caltech around 1975
  11. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: D Statistics for Physicists”, Caltech around 1975
  12. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: E Numerical Analysis Part I”, Caltech around 1975
  13. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: E Numerical Analysis Part II”, Caltech around 1975
  14. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: B Parallel Computing and Linear Algebra”, Caltech around 1975, and CPS615 (Computational Science) Syracuse University around 1995
  15. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: Homework Questions and Answers”, Caltech around 1975
  16. Geoffrey Fox, Ph129 “Mathematical Methods for Physics: Exam Questions and Answers”, Caltech around 1975
  17. * Fox, G. C., (with Particle Data Group), “Compilation of High Energy Physics Data: Inventory of the Particle Data Group Holdings 1980,” LBL-92, CALT-68- 821, (December, 1980)
  18. Fox, G. C. and Wolfram, S., “A Gallimaufry of e+ e- Annihilation Event Shapes,” CALT-68-723, (September, 1979)
  19. * Fox, G. C. and Quigg, C. “Compilation of Elastic Scattering Data,” UCRL-20001, (January 1970)
  20. Fox, G., “Peripheral Production of Resonances,” AIP Conference Proceedings 8, 271 (1972)
  21. Fox, G., “Pi Exchange”, CALT-68-335
  22. Fox, G., “Experiments with Polarized Targets”, ANL-7208, (1971)
  23. Baker, M. A., Fox, G. C., and Yau, H. W., “A Review of Commercial and Research Cluster Management Software, " SCCS-0748, (June 1996)
  24. Fox, G. C., “Skeletons in the Regge Cupboard,” High energy collisions: third international conferences, Proceedings of the Stony Brook Conference on High Energy Physics, 1969, 3rd International Conference on High Energy Collisions, (September 1969)
  25. Fox, G., “The Teraflop Supercomputer,” Computers in Physics, (Jan/Feb 1980)
  26. Fox, G. C., “Veni, Vidi, Vici Regge theory”, Comments on nuclear and particle physics, (1969)
  27. Amar Gandhi, and Geoffrey Fox “Solving Problems in Navigation” SCCS-009, 1990

2.3 - Publications 1990-2021

Selected Publications 1991-2021

Digital Science Center Publications

Reports and Papers

  1. Gregor von Laszewski, Anthony Orlowski, Richard H. Otten, Reilly Markowitz, Sunny Gandh, Adam Chai, Geoffrey C. Fox, Wo L. Chang (2021). “Using GAS for Speedy Generation of HybridMulti-Cloud Auto Generated AI Services ". IEEE COMPSAC 2021: Intelligent and Resilient Computing for a Collaborative World 45th Anniversary Conference .

  2. John B. Rundle, Andrea Donnellan, Geoffrey Fox, James P Crutchfield, Robert A Granat, “Nowcasting Earthquakes: Imaging the Earthquake Cycle in California with Machine Learning”, Earth and Space Science Open Archive, 28 Mar 2021, DOI 10.1002/essoar.10506614.1 ,

  3. Vibhatha Abeykoon Geoffrey Fox and Minje Kim and Saliya Ekanayake and Supun Kamburugamuve and Kannan Govindarajan and Pulasthi Wickramasinghe and Niranda Perera and Chathura Widanage and Ahmet Uyar and Gurhan Gunduz and Selahatin Akkas, "Stochastic gradient descent‐based support vector machines training optimization on Big Data and HPC frameworks", published in Concurrency and Computation: Practice and Experience: 30 March 2021 https://doi.org/10.1002/cpe.6292

  4. Quetzalcóatl Toledo-Marín, J; Fox, Geoffrey; Sluka, James P; Glazier, James A, " Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations" February 10, 2021 Arxiv Researchgate

  5. Thanh Nguyen, Tongbin Zhang, Geoffrey Fox, Sisi Zeng, Ni Cao, Chuandi Pan, Jake Y. Chen, “Linking Clinotypes to Phenotypes and Genotypes from Laboratory Test Results in Comprehensive Physical Exams " BMC Medical Informatics and Decision Making volume 21, Article number: 51 (2021). DOI Researchgate February 24, 2021

  6. Pulasthi Wickramasinghe, Geoffrey Fox, “Multidimensional Scaling for Gene Sequence Data with Autoencoders", Best paper award at Data Science conference CONF-CDS 2021 January 28 2021 Stanford online. Arxiv

  7. Bo Feng and Geoffrey Fox, “TSEQPREDICTOR: Spatiotemporal Extreme Earthquakes Forecasting for Southern California”, preprint December 20, 2020,. Arxiv

  8. Niranda Perera, Vibhatha Abeykoon,Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Pulasthi Wickramasinghe, Ahmet Uyar, Hasara Maithree, Damitha Lenadora, Geoffrey Fox, “A Fast, Scalable, Universal Approach For Distributed Data Reductions ", International Workshop on Big Data Reduction held with 2020 IEEE International Conference on Big Data Atlanta, GA December 10,2020

  9. César Fernández Ramírez, Jorge Antonio Silva-Castro, Miguel Albaladejo, Igor Danilkin, Andrew Jackura, Vincent Mathieu, Jannes Nys, Alessandro Pilloni, Adam Szczepaniak, Geoffrey Fox, “Nucleon resonance spectrum from Regge systematic”, Bulletin of American Physical Society, 2020 Fall Meeting of the APS Division of Nuclear Physics, Thursday–Sunday, October 29–November 1 2020

  10. Bo Feng, Qian Lou, Lei Jiang, and Geoffrey C. Fox, “CryptoGRU: Low Latency Privacy-Preserving Text Analysis With GRU”, Technical report October 21,2020. Arxiv .

  11. SungRyeol Yang, Geoffrey Fox, and Bokyoon Na, " Taxonomic Classification of Objects with Convolutional Neural Networks ", Special Session 4: Machine Learning on Big Data (MLBD 2020), Friday December 11,2020, IEEE Big Data Conference Atlanta GA. Technical Report Sep 06, 2020

  12. Geoffrey Fox, “DRAFT Deep Learning for Spatial Time Series ", Technical Report, 17 November 2020. ResearchGate

  13. Spidal Collaboration (NSF 1443054): Arizona State (Oliver Beckstein), Indiana (Geoffrey Fox, Judy Qiu, David Crandall, Gregor von Laszewski), Kansas (John Paden), Rutgers (Shantenu Jha), Stony Brook (Fusheng Wang), University of Virginia (Madhav Marathe, Anil Vullikanti) and Utah (Thomas Cheatham) ; “Summary Perspectives of the SPIDAL Project NSF #1443054 from 2014-2020 " Technical Report, October 26, 2020

  14. Qian Lou, Bo Feng, Geoffrey C. Fox, and Lei Jiang, “Glyph: Fast and Accurately Training Deep Neural Networks on Encrypted Data”, Technical report arxiv to appear in updated form at NeurIPS 2020

  15. H. He, W. Zhao, S. Huang, G. C. Fox, and Q. Wang, "Research on the Architecture and its Implementation for Instrumentation and Measurement Cloud," IEEE Trans. Serv. Comput., vol. 13, no. 5, pp. 944–957, 2020 [Online]. Available: http://dx.doi.org/10.1109/TSC.2017.2723006

  16. Dimuthu Wannipurage, “Tensorflow Integration with Twister2 " Technical Report from Independent Study August 5 2020

  17. Bokyoon Na and Geoffrey Fox, “Object Detection by a Super-Resolution Method and a Convolutional Neural Networks" in International Journal of Data Mining Science. Vol 1, Issue 1, pages 16-23, May 17 2021

  18. Vibhatha Abeykoon, Niranda Perera, Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Hasara Maithree, Pulasthi Wickramasinghe, Ahmet Uyar, Geoffrey Fox, “Data Engineering for HPC with Python " at 9th Workshop on Python for High-Performance and Scientific Computing, November 13, 2020. Held at SC20 conference

  19. César Fernández Ramírez, Jorge Antonio Silva-Castro, Miguel Albaladejo, Igor Danilkin, Andrew Jackura, Vincent Mathieu, Jannes Nys, Alessandro Pilloni, Adam Szczepaniak, Geoffrey Fox, " Abstract: FQ.00003 : Nucleon resonance spectrum from Regge systematic", 2020 Fall Meeting of the APS Division of Nuclear Physics

  20. W. Gao, J. Zhan, G. Fox, X. Lu, and D. Stanzione, “Benchmarking, Measuring, and Optimizing: Second BenchCouncil International Symposium ", Bench 2019, Denver, CO, USA, November 14–16, 2019, Revised Selected Papers. Springer Nature, July 29, 2020

  21. Yuchen Wang, Mingze Xu, John D. Paden, Lora S. Koenig, Geoffrey C. Fox, David J. Crandall, " Deep Tiered Image Segmentation for Detecting Internal Ice Layers in Radar Imagery " Technical Report July 23 2020. Arxiv: 2010.03712v1

  22. Bo Peng, Jiayu Li, Selahattin Akkas, Fugang Wang, Takuya Araki, Ohno Yoshiyuki, Judy Qiu, “Rank Position Forecasting in Car Racing", Technical Report July 12, 2020

  23. Geoffrey C. Fox, Gregor von Laszewski, Fugang Wang, and Saumyadipta Pyne "AICov: An Integrative Deep Learning Framework for COVID-19 Forecasting with Population Covariates”Technical Report July 3 2020 Arxiv with update . Published in J. data sci.(2021), 1-21, DOI 10.6339/21-JDS1007

  24. Ahmet F. Mustacoglu, Ferhat O. Catak, Geoffrey C. Fox, "Password-based encryption approach for securing sensitive data" Security and Privacy, July 1 2020 DOI and ResearchGate

  25. Chathura Widanage, Niranda Perera, Vibhatha Abeykoon, Supun Kamburugamuve, Thejaka Amila Kanewalaz, Hasara Maithreek, Pulasthi Wickramasinghe, Ahmet Uyar, Gurhan Gunduz, and Geoffrey Fox, "High Performance Data Engineering Everywhere", Technical report J une 30, 2020. 2020 IEEE International Conference on Smart Data Services (SMDS), 122-132.

  26. Ahmet Uyar, Gurhan Gunduz, Supun Kamburugamuve, Pulasthi Wickramasinghe, Chathura Widanage, Kannan Govindarajan, Niranda Perera, Vibhatha Abeykoon, Selahattin Akkas, Geoffrey Fox, "Twister2 Cross-Platform Resource Scheduler for Big Data", Technical Report June 30, 2020. 6th National High Performance Computing Conference Basarim 2020, Ankara Yıldırım Beyazıt University, Ankara Turkey October 8-9, 2020

  27. Geoffrey Fox, “Deep Learning Based Time Evolution" Technical Report June 8 2020, ResearchGate

  28. Qian Lou, Bo Feng, Geoffrey Charles Fox, Lei Jiang “Glyph: Fast and Accurately Training Deep Neural Networks on Encrypted Data" Technical report November 2019 updated May 30, 2020. ResearchGate Arxiv: 1911.07101v1

  29. Nesreen Ahmed, Richard Alo, Catherine Amelink, Young Yun Baek, Aashish Chudhary, Kristy Collins, Albert Esterline, Edward Fox, Geoffrey Fox, Aric Hagberg, Ron Kenyon, Chris J. Kuhlman, Jure Leskovec, Dustin Machi1, Madhav V. Marathe, Nataragan Meghanathan, Yasuo Miyasaki, Judy Qiu, Naren Ramakrishnan, S. S. Ravi, Ryan Rossi, Roc Sosic, Gregor von Laszewski, “net.science: A Cyberinfrastructure for Sustained Innovation in Network Science and Engineering" Technical Report May 18 2020

  30. Pete Beckman, Jack Dongarra, Nicola Ferrier, Geoffrey Fox, Terry Moore, Dan Reed, Micah Beck, “Harnessing the Computing Continuum for Programming Our World", Technical Report March 11 2019 published in “Fog Computing: Theory and Practice " published by Wiley and edited by Albert Zomaya Assad Abbas Samee Khan, DOI 25 April 2020

  31. JCS Kadupitiya, Geoffrey C. Fox and Vikram Jadhao, “Simulating Molecular Dynamics with Large Timesteps using Recurrent Neural Networks" arXiv: 2004.06493v2 and ResearchGate 12 April 2020. Revised and GitHub site.

  32. Bokyoon Na, Geoffrey C Fox, "Object Classifications by Image Super-Resolution Preprocessing for Convolutional Neural Networks", Advances in Science, Technology and Engineering Systems Journal (ASTESJ) Volume 5, Issue 2, Page No 476-483, 2020 DOI: 10.25046/aj050261 March 12 2020

  33. J. C. S. Kadupitiya, F. Sun, G. Fox, and V. Jadhao, “Machine learning surrogates for molecular dynamics simulations of soft materials ," J. Comput. Sci. , vol. 42, p. 101107, Apr. 2020 [Online]. Journal link

  34. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao "Abstract: L45.00002 : Recurrent Neural Networks Based Integrators for Molecular Dynamics Simulations", at Session L45: Emerging Trends in Molecular Dynamics Simulations and Machine Learning II, 8:00 AM–11:00 AM, Wednesday, March 4, 2020, Denver, Colorado

  35. Aristeidis Tsaris, Jacob Balma, Murali Emani, Steve Farrell, Geoffrey C Fox, Yin Junqi, Thorsten Kurth, Abid Malik, Prabhat, Mallikarjun Shankar, Venkatram Vishwanath, “Exploring Deep Learning for Science Benchmarks on DOE Supercomputers", Oak Ridge National Lab, Cray Inc., Argonne National Laboratory, Lawrence Berkeley National Laboratory, Brookhaven National Laboratory, Indiana University Bloomington, NVIDIA, insideHPC article and Exascale Computing Project Poster February 24, 2020

  36. Geoffrey Fox, and Shantenu Jha, “MLforCI and CIforML: Future Cyberinfrastructure" Technical Report February 23 2020 ResearchGate

  37. Geoffrey C. Fox, Gregor von Laszewski, “Automated Big Data REST Service Creation in Support of Big Data Applications" Technical Report December 26, 2019

  38. Online Book: E222 Spring 2019 Introduction to Clouds and Machine Learning Undergraduate Class 484 pages

  39. Online Book: Cloud Computing Topics Fall 2019 590 pages

  40. Online Book: Python for Cloud Computing Fall 2019 242 pages

  41. Online Book: Linux for Cloud Computing Fall 2019 40 pages

  42. Online Book: E516 Engineering Cloud Computing Class Lectures Fall 2019 62 pages

  43. Online Book: E516 Engineering Cloud Computing OpenStack and Chameleon Cloud Fall 2019 78 pages

  44. Online Book: E516 Engineering Cloud Computing Proceedings -- Student Projects Fall 2019 128 pages

  45. Online Book: E534 Big Data Applications and Analytics Class Lectures Fall 2018 141 pages

  46. Online Book: E534 Big Data Applications and Analytics Class (Deep Learning version) Lectures Fall 2019 73 pages

  47. Xinyuan Huang, Geoffrey C. Fox, Sergey Serebryakov, Ankur Mohan, Pawel Morkisz, Debojyoti Dutta, “Benchmarking Deep Learning for Time Series: Challenges and Directions", presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019

  48. Vibhatha Abeykoon, Supun Kamburugamuve, Kannan Govindrarajan, Pulasthi Wickramasinghe, Chathura Widanage, Niranda Perera, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, Gregor Von Laszewski, and Geoffrey Fox, “Streaming Machine Learning Algorithms with Big Data Systems " with update presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019

  49. Thanh Nguyen, Tongbin Zhang, Geoffrey Fox, Sisi Zeng, Ni Cao, Chuandi Pan, Jake Y. Chen, “Linking Clinotypes to Phenotypes and Genotypes from Laboratory Test Results in Comprehensive Physical Exams " submitted to MCBIOS 2019 Proceedings to be published in BMC Medical Informatics and Decision Making .

  50. Supun Kamburugamuve, Geoffrey Fox, Pulasthi Wickramasinghe, Niranda Perera, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, “Twister2 Status October 2019",Technical Report, October 10, 2019

  51. Victor Berger, Mingze Xu, Mohanad Al-Ibadi, Shane Chu, David Crandall, John Paden, Geoffrey Fox, Automated Ice-Bottom Tracking of 2D and 3D Ice Radar Imagery Using Viterbi and TRW-S , IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, Sept 2019, vol 12, no 9, pp. 3272-3285, DOI: 10.1109/JSTARS.2019.2930920

  52. Victor Berger, John Paden, Mohanad Al-Ibadi, David Crandall, Geoffrey Fox, Anjali Pare, Maryam Rahnemoonfar, Mingze Xu, Masoud Yari, “Comparison of 2-D and 3-D ice-bottom tracking algorithms ," in INTERNATIONAL GLACIOLOGICAL SOCIETY Five Decades of Radioglaciology, Stanford, California, USA, 2019.

  53. Yuchen Wang, David Crandall, Mingze Xu, Lora Koenig, John Paden, Geoffrey Fox, “Automatic detection of snow layers in radar images ", International Glaciological Society International Symposium on Five Decades of Radioglaciology, July 8-12, 2019.

  54. Vibhatha Abeykoon, Zhengchun Liu, Rajkumar Kettimuthu, Geoffrey Fox and Ian Foster,"Scientific Image Restoration Anywhere", 1st Annual Workshop on Large-Scale Experiment-in-the-Loop-Computing (XLOOP) SC19 Conference , Colorado Convention Center, November 18, 2019

  55. Geoffrey Fox and Shantenu Jha, “Next Generation Cyberinfrastructure for BDEC ", BDEC2 Meeting October 15-17, 2019, San Diego, California,

  56. Geoffrey Fox and Shantenu Jha, “Understanding ML driven HPC: Applications and Infrastructure ", 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California. Arxiv 1909.02363

  57. Geoffrey Fox and Shantenu Jha, “Learning Everywhere: A Taxonomy for the Integration of Machine Learning and Simulations ", 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California, Arxiv 1909.13340

  58. Pulasthi Wickramasinghe, Niranda Perera, Supun Kamburugamuve, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, Geoffrey Fox, “High-Performance Iterative Dataflow Abstractions in Twister2:TSet",Technical Report, September 2, 2019

  59. Fanbo Sun, JCS Kadupitiya, Geoffrey Fox, Vikram Jadhao, “Machine Learning Molecular Dynamics Simulations for Enhanced Student Learning", Technical Report September 5, 2019

  60. Vibhatha Abeykoon, Geoffrey Fox, Minje Kim, Saliya Ekanayake, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Niranda Perera, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas, “Stochastic Gradient Descent Based Support Vector Machines Training Optimization on Big Data and HPC Frameworks", Technical Report August 7, 2019. Updated version June 28, 2020 published in Concurrency" li-bullet-0"> Hyungro Lee and Geoffrey C. Fox, " Big Data Benchmarks of High-Performance Storage Systems on Commercial Bare Metal Clouds", Proceedings of IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy

  61. Mahzad Khoshlessan, Ioannis Paraskevakos, Geoffrey C. Fox, Shantenu Jha, Oliver Beckstein, “Parallel Performance of Molecular Dynamics Trajectory Analysis", Technical Report June 21 2019

  62. Geoffrey Fox, “A review of the Learning Everywhere area or the Intersection of Machine Learning, Big Data and HPC ", June 8 2019.

  63. Geoffrey Fox, “Perspectives on High-Performance Computing in a Big Data World" or with frontispiece , ACM HPDC 2019 The 28th International Symposium on High-Performance Parallel and Distributed Computing, Phoenix, Arizona, USA - June 27, 2019. This describes the award talk “Perspectives on High-Performance Computing in a Big Data World" using video nugget . There is a Google Slides version and a YouTube video (short) or longer version in 5 parts. There was a plaque awarded

  64. Geoffrey Fox, Vibhatha Abeykoon, Selahattin Akkas, Kannan Govindarajan, Gurhan Gunduz, Supun Kamburugamuve, Niranda Perera, Ahmet Uyar, Pulasthi Wickramasinghe, Chathura Widanage, “Twister2 Demonstrations for BDEC2", BDEC2 Meeting May 14-16 2019, Poznan Poland

  65. Vibhatha Abeykoon, Geoffrey Fox and Minje Kim,"Performance Optimization on Model Synchronization in Parallel Stochastic Gradient Descent Based SVM",HPML 2019 : 2nd High Performance Machine Learning Workshop May 14 2019 as part of CCGrid2019 Larnaca Cyprus

  66. Pulasthi Wickramasinghe, Supun Kamburugamuve, Kannan Govindarajan, Vibhatha Abeykoon, Chathura Widanage, Niranda Perera, Ahmet Uyar , Gurhan Gunduz, Selahattin Akkas, Geoffrey Fox,"Twister2:TSet High-Performance Iterative Dataflow", Technical Report April 5 2019. Best paper award in 2019 International IEEE Conference on High Performance Big Data and Intelligent Systems. HPBD and IS2019 Shenzhen, China May 9-11 201

  67. C.-H. Hsu, G. Fox, G. Min, and S. Sharma, "Advances in big data programming, system software and HPC convergence," J. Supercomput., vol. 75, no. 2, pp. 489–493, Feb. 2019 DOI

  68. Geoffrey Fox, James A. Glazier, JCS Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, and Shantenu Jha, “Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation", accepted for HPBDC workshop at IPDPS , Rio de Janeiro, Brazil, Monday, May 20th, 2019. Arxiv:1902.10810)

  69. Geoffrey Fox, James A. Glazier, JCS Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, and Shantenu Jha, “Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation: Application Background", Technical Report February 16 2019

  70. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao, “Machine Learning for Auto-tuning of Simulation Parameters in Car-Parrinello Molecular Dynamics”, Bulletin of the American Physical Society for March meeting , 2019 - APS March 6, 2019; Boston, Massachusetts

  71. Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Twister2: Design of a Big Data Toolkit" in Concurrency and Computation, Practice and Experience Special issue for EXAMPI 2017 workshop November 12 2017 at SC17 conference, Denver CO 2017. Published as https://onlinelibrary.wiley.com/doi/full/10.1002/cpe.5189 .

  72. Geoffrey Fox and Gregor von Laszewski, “E534 Big Data Algorithms and Applications Class" as epub or PDF Class Book Fall 2018

  73. JCS Kadupitiya, Geoffrey C. Fox, and Vikram Jadhao, “Machine learning for performance enhancement of molecular dynamics simulations", Technical Report December 28, 2018; International Conference on Computational Science ICCS2019 Faro, Algarve, Portugal 12-14 June 2019.

  74. Bokyoon Na and Geoffrey Fox, " Object Detection by a Super-Resolution Method and a Convolutional Neural Networks " in 4th Special Session on Intelligent Data Mining at IEEE International Conference on Big Data 2018 December 11, 2018, Westin Hotel, Seattle, WA, USA

  75. Sahil Tyagi, Bo Peng, Judy Qiu,"Anomaly Detection over Streaming Data:Indy 500", E500 Class report December 2018.

  76. Dilshan Niranda Perera “Coarse-grained and Fine-grained Analytics in a Single Framework", E500 Class report December 2018.

  77. Judy Qiu, “Real-Time Anomaly Detection from Edge to HPC-Cloud”, white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  78. Oliver Beckstein, Geoffrey Fox, Shantenu Jha, “Convergence of data generation and analysis in the biomolecular simulation community ", white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  79. Geoffrey Fox, “Computational and Data Intelligence linked in the Intelligent Aether for Applications”, white paper at BDEC2"Big Data and Extreme-Scale Computing", Workshop, Bloomington, Indiana November 28 - 30, 2018

  80. JCS Kadupitiya, Geoffrey C. Fox and Vikram Jadhao, “Machine Learning for Parameter Auto-tuning in Molecular Dynamics Simulations: Efficient Dynamics of Ions near Polarizable Nanoparticles", Technical report November 30 2018. The international journal of high performance computing applications to be published.

  81. Spidal Collaboration (NSF 1443054): Arizona State (Oliver Beckstein), Indiana (Geoffrey Fox, Judy Qiu, David Crandall, Gregor von Laszewski), Kansas (John Paden), Rutgers (Shantenu Jha), Stony Brook (Fusheng Wang), University of Virginia (Madhav Marathe, Anil Vullikanti) and Utah (Thomas Cheatham); “Contributions to High-Performance Big Data Computing", Technical Report September 30, 2018 with June 21, 2019 Update . Published as a chapter in " Future Trends of HPC in a Disruptive Scenario" Editors: Grandinetti, L., Joubert, G.R., Michielsen, K., Mirtaheri, S.L., Taufer, M., Yokota, R., IOS Press Volume 34 of Advances in Parallel Computing, ISBN print 978-1-61499-998-0, SEptember 2019

  82. JCS Kadupitiya, Nicholas Brunk, Sohile Ali, Geoffrey C. Fox, Vikram Jadhao, “Nanosphere Electrostatics Lab" tool on nanoHUB , doi: 10.4231/D34X54J88

  83. Judy Qiu, "Harp-DAAL for High Performance Big Data Computing", report for Intel Parallel Universe Magazine - Issue 32 , March 2018

  84. Bingjing Zhang, Bo Peng, Langshi Chen, Ethan Li, Yiming Zhou, Judy Qiu, “Introduction to Harp: when Big Data Meets HPC" Internal Report on Harp June 2017

  85. JPAC collaboration: J.A. Silva-Castro, C. Fernandez-Ramirez, M. Albaladejo, I.V. Danilkin, A. Jackura, V. Mathieu, J. Nys, A. Pilloni, A.P. Szczepaniak, G. Fox, “Regge phenomenology of the N* and Delta* poles", September 6, 2018, arXiv: 1809.01954 [hep-ph] Physical Review D, 2019

  86. John Paden, Victor Berger, Mohanad Al-Ibadi, Shane Chu, Mingze Xu, David Crandall, Geoffrey Fox, “Subglacial bed topography using machine learning and geostatistical analysis applied to 2D and 3D radar sounding", abstract for AGU Fall Meeting December 10-14 2018 Washington DC

  87. John Paden; Mingze Xu; Jordan Sprick; Sravya Athinarapu; David Crandall; David O Burgess; Martin J Sharp; Geoffrey C Fox; Carl Leuschen, “3D Imaging and Automated Ice Bottom Tracking of Canadian Arctic Archipelago Ice Sounding Data", Poster, American Geophysical Union (AGU) Fall Meeting , 2016

  88. Gregor von Laszewski Editor “Technology Snapshots Volume 1", Spring 2017 Intelligent Systems Engineering E616 Student Reports printed August 10 2018

  89. Gregor von Laszewski Editor “Technology Snapshots Volume 2", Spring 2017 Intelligent Systems Engineering E616 Student Reports printed August 10 2018

  90. M Asch, T Moore, R Badia, M Beck, P Beckman, T Bidot, F Bodin, F Cappello, A Choudhary, B de Supinski, E Deelman, J Dongarra, A Dubey, G Fox, H Fu, S Girona, W Gropp, M Heroux, Y Ishikawa, K Keahey, D Keyes, W Kramer, J-F Lavignon, Y Lu, S Matsuoka, B Mohr, D Reed, S Requena, J Saltz, T Schulthess, R Stevens, M Swany, A Szalay, W Tang, G Varoquaux, J-P Vilotte, R Wisniewski, Z Xu, I Zacharov, “Big data and extreme-scale computing: Pathways to Convergence-Toward a shaping strategy for a future software and data ecosystem for scientific inquiry", The International Journal of High Performance Computing Applications Volume: 32 issue: 4, page(s): 435-479 July 16, 2018. DOI

  91. Wo Chang, Geoffrey Fox, and NIST Big Data Public Working Group : Volume 3. “NIST Big Data Interoperability Framework: Volume 3, Use Cases and General Requirements" NIST technical report N IST SP 1500-3r1 June 2018

  92. Wo Chang, Gregor von Laszewski, and NIST Big Data Public Working Group : Volume 8. “NIST Big Data Interoperability Framework: Volume 8, Reference Architecture Interfaces" NIST technical report NIST SP 1500-9r1 June 2018

  93. JPAC Collaboration, J. Nys, A. N. Hiller Blin, V. Mathieu, C. Fernández-Ramírez, A. Jackura, A. Pilloni, J. Ryckebusch, A. P. Szczepaniak, G. Fox, “Global analysis of charge exchange meson production at high energies" Technical Report June 5 2018. Arxiv

  94. Hamid Kamangir, Maryam Rahnemoonfar, Dugan Dobbs, John Paden, Geoffrey Fox, “DEEP HYBRID WAVELET NETWORK FOR ICE BOUNDARY DETECTION IN RADAR IMAGERY ", in IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2018

  95. Fugang Wang, Gregor von Laszewski, Timothy Whitson, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo, “Evaluating the Scientific Impact of XSEDE", PEARC18 conference Technical Program, July 22-26, 2018 Pittsburgh PA. Older version here .

  96. Supun Kamburugamuve, Pulasthi Wickramasinghe, Kannan Govindarajan, Ahmet Uyar, Gurhan Gunduz, Vibhatha Abeykoon, Geoffrey Fox, " Twister:Net - Communication Library for Big Data Processing in HPC and Cloud Environments", Proceedings of Cloud 2018 Conference July 2-7 2018, San Francisco.

  97. Hyungro Lee, Kumar Satyam and Geoffrey C. Fox, “Evaluation of Production Serverless Computing Environments",Technical report April 3 2018 DOI , Third International Workshop on Serverless Computing ( WoSC3) 2018 July 2 2018 at Cloud 2018 Conference July 2-7 2018, San Francisco

  98. Hyungro Lee, Geoffrey C. Fox, “Big Data Benchmarks on Bare Metal Cloud" Technical Report May 31 2018.

  99. JPAC Collaboration: V. Mathieu, J. Nys, A. H. Blin, C. Fernandez-Ramirez, A. Jackura, M. Mikhasenko, V. Pauk, A. Pilloni, A. P. Szczepaniak, and G. Fox, “Structure of Pion Photoproduction Amplitudes" Technical Report May 25 2018. Arxiv June 21, 2018

  100. JPAC Collaboration: V. Mathieu, J. Nys, C. Fernández-Ramírez, A. Jackura, A. Pilloni, N. Sherrill, A. Szczepaniak, G. Fox, " Vector Meson Photoproduction with a Linearly Polarized Beam", 26 Feb 2018 Arxiv . Published DOI , Phys. Rev. D 97, 094003 – Published 9 May 2018

  101. Mark Asch and Terry Moore Editors, "BIG DATA AND EXTREME-SCALE COMPUTING: PATHWAYS TO CONVERGENCE Toward a Shaping Strategy for a Future Software and Data Ecosystem for Scientific Inquiry", Tech Report No. ICL-UT-17-08. Authors: J.-C. Andre, G. Antoniu, M. Asch, R. Badia Sala, M. Beck, P. Beckman, T. Bidot, F. Bodin, F. Cappello, A. Choudhary, B. de, Supinski, E. Deelman, J. Dongarra, A. Dubey, G. Fox, H. Fu, S. Girona, W. Gropp, M. Heroux, Y. Ishikawa, K. Keahey, D. Keyes, W. Kramer, J.-F. Lavignon, Y. Lu, S. Matsuoka, B. Mohr, T. Moore, D. Reed, S. Requena, J. Saltz, T. Schulthess, R. Stevens, M. Swany, A. Szalay, W. Tang, G. Varoquaux, J.-P. Vilotte, R. Wisniewski, Z. Xu, and, I. Zacharov

  102. Lei Jiang, Langshi Chen and Judy Qiu, " Performance Characterization of Multi-threaded Graph Processing Applications on Many-Integrated-Core Architecture", 2018 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), April 2-4, Belfast, Northern Ireland, United Kingdom, 2018.

  103. Bo Peng, Bingjing Zhang, Langshi Chen, Mihai Avram, Robert Henschel, Craig Stewart, Shaojuan Zhu, Emily Mccallum, Lisa Smith, Tom Zahniser, Jon Omer, Judy Qiu, “HarpLDA+: Optimizing Latent Dirichlet Allocation for Parallel Efficiency", the IEEE Big Data 2017 conference , Boston, MA, USA, December 11-14, 2017.

  104. Langshi Chen, Bo Peng, Sabra Ossen, Anil Vullikanti, Madhav Marathe, Lei Jiang, Judy Qiu, “High-Performance Massive Subgraph Counting using Pipelined Adaptive-Group Communication”, Technical Report, April 25 2018.

  105. Mohanad Al-Ibadi, Jordan Sprick, Sravya Athinarapu, Victor Berger, Theresa Stumpf, John Paden, Carl Leuschen, Fernando Rodríguez, Mingze Xu, David Crandall, Geoffrey Fox, David Burgess, Martin Sharp, Luke Copland, and Wesley Van Wychen, “Crossover Analysis and Automated Layer-Tracking Assessment of the Extracted DEM of the Basal Topography of the Canadian Arctic Archipelago Ice-Caps", Poster presentation at the 2018 IEEE Radar Conference , Oklahoma City, USA, April 23-27, 2018.

  106. Mingze Xu, Chenyou Fan, John Paden, Geoffrey Fox and David Crandall, “Multi-Task Spatiotemporal Neural Networks for Structured Surface Reconstruction", 2018 IEEE Winter Conference on Applications of Computer Vision ( WACV2018), March 12-14, 2018 at Harvey’s Casino in Lake Tahoe, NV/CA

  107. Hyungro Lee, Advisor: Geoffrey C. Fox, “Event-driven Computing on HPC: Experiments with Scientific Applications" RIKEN AICS HPC Youth Workshop FY2017 Feb 7-8 2018, AICS International Symposium in KOBE, JAPAN.

  108. Ioannis Paraskevakos, Andre Luckow, George Chantzialexiou, Mahzad Khoshlessan, Oliver Beckstein, Geoffrey C. Fox, Shantenu Jha, " Task-parallel Analysis of Molecular Dynamics Trajectories", Technical Report 23 January 2018 arXiv , Proceedings of ICPP 2018, 47th International Conference on Parallel Processing, August 13-16, 2018, University of Oregon, Eugene, Oregon, USA

  109. Victor Berger, Mingze Xu, David Crandall, John Paden, Geoffrey C. Fox, “AUTOMATED TRACKING OF 2D AND 3D ICE RADAR IMAGERY USING VITERBI AND TRW-S", Technical Report January 9, 2018. Published in IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2018

  110. Hamid Kamangir, Maryam Rahnemoonfar, Dugan Dobbs, John Paden, Geoffrey Fox, “DETECTING ICE LAYERS IN RADAR IMAGES WITH DEEP LEARNING", Technical Report January 9, 2018

  111. Kadupitiya Kadupitige, “Intersection of HPC and Machine Learning", Final Report of Independent Study December 26, 2017

  112. Kadupitiya Kadupitige, “Performance enhancement of Ionic structure in liquids confined by dielectric interfaces (A nanoconfinement framework)", Final Report on Semester research, December 26, 2017

  113. Kadupitige Kadupitiya, Suresh Marru, Geoffrey C. Fox, Vikram Jadhao, “Ions in Nanoconfinement" tool on nanoHUB , doi: 10.4231/D3T14TR83 21 December 2017

  114. Andrew J. Younge, Shantenu Jha, and Geoffrey C. Fox, “HPC and Big Data Convergence for Extreme Heterogeneous Systems", December 1, 2017

  115. Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Twister2: Design of a Big Data Toolkit" in EXAMPI 2017 workshop November 12 2017 at SC17 conference, Denver CO 2017.

  116. J. Nys, V. Mathieu, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, A. Pilloni, N. Sherrill, J. Ryckebusch, A. P. Szczepaniak, G. Fox (JPAC Collaboration), “Features of pi Delta Photoproduction at High Energies", Technical report 7 November 2017 Arxiv . Published DOI Physics Letters B, Volume 779, 10 April 2018, Pages 77-81

  117. Kannan Govindarajan, Supun Kamburugamuve, Pulasthi Wickramasinghe, Vibhatha Abeykoon, Geoffrey Fox, “Task Scheduling in Big Data - Review, Research: Challenges, and Prospects" Technical Report October 31 2017 published in 9th INTERNATIONAL CONFERENCE ON ADVANCED COMPUTING December 14-16, 2017 Anna University, MIT Campus, Chennai

  118. Langshi Chen, Bo Peng, Zhao Zhao, Saliya Ekanayake, Anil Vullikanti, Madhav Marathe, Shaojuan Zhu, Emily Mccallum, Lisa Smith, Lei Jiang, Judy Qiu, “A New Pipelined Adaptive-Group Communication for Large-Scale Subgraph Counting", Technical Report October 22 2017

  119. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham), “Summary of NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science”, September 23 2017.

  120. Geoffrey Fox, “Special Issue on 12th International Workshop on Java Technologies for Real-Time and Embedded Systems JTRES2014", Editorial for Concurrency and Computation: Practice and Experience, 2017. Published DOI Volume 29, issue 22, 25 November 2017

  121. Judy Qiu, Supun Kamburugamuve, Hyungro Lee, Jerome Mitchell, Rebecca Caldwelly, Gina Bullockz, Linda Hayden, “Teaching, Learning and Collaborating through Cloud Computing Online Classes”, technical report September 2017.

  122. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low latency stream processing: Apache Heron with Infiniband and Intel Omni-Path", technical report September 2017. To be presented at UCC conference at Austin Texas December 5-8, 2017.

  123. Zhao Zhao, Langshi Chen, Mihai Avram, Meng Li, Guanying Wang, Ali Butt, Maleq Khan, Madhav Marathe, Judy Qiu, Anil Vullikanti, " Finding and counting tree-like subgraphs using MapReduce", technical report, August 2017.

  124. JPAC Collaboration: V. Mathieu, J. Nys, A. Pilloni, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, V. Pauk, A. P. Szczepaniak, G. Fox, “Analyticity Constraints for Hadron Amplitudes: Going High to Heal Low Energy Issues", 25 August 2017, arXiv:1708.07779

  125. Geoffrey C. Fox, Vatche Ishakian, Vinod Muthusamy, Aleksander Slominski, “Status of Serverless Computing and Function-as-a-Service(FaaS) in Industry and Research", Report from workshop and panel at the First International Workshop on Serverless Computing ( WoSC) Atlanta, June 5 2017 DOI arXiv:1708.08028

  126. Supun Kamburugamuve and Geoffrey Fox, “Designing Twister2: Efficient Programming Environment Toolkit for Big Data" Digital Science Center, technical report August 6 2017 DOI

  127. Mark McCombe, Gregor von Laszewski and Geoffrey C. Fox, " Teaching Big Data and Open Source Software on Chameleon Cloud", Chameleon User Meeting , September 13-14 2017 in the Theory and Computer Science building at the Argonne National Laboratory

  128. Gregor von Laszewski and Geoffrey C. Fox, “Automated Sharded MongoDB Deployment and Benchmarking for Big Data Analysis", Chameleon User Meeting , September 13-14 2017 in the Theory and Computer Science building at the Argonne National Laboratory

  129. L. Chen, J. Qiu. “Development of Harp-DAAL Interface" Technical Report (December 2016)

  130. L. Chen, J. Qiu. “Harp-DAAL: A High Performance Data-Intensive Machine Learning Framework" Technical Report (March 2017)

  131. B. Peng, B. Zhang, L. Chen, M. Avram, R. Henschel, C. Stewart, S. Zhu, E. Mccallum, L. Smith, T. Zahniser, J. Omer, J. Qiu. " HarpLDA+: Optimizing Latent Dirichlet Allocation for Parallel Efficiency" Technical Report (August 2017) to be published in IEEE Big Data conference December 11-14 2017, Boston, MA

  132. A. Jackura, C. Fernandez-Ramirez, M. Mikhasenko, A. Pilloni, V. Mathieu, J. Nys, V. Pauk, A. P. Szczepaniak, G. Fox, and COMPASS Collaboration(235 total authors), “New analysis of ηπ tensor resonances measured at the COMPASS experiment ", 10 July 2017, CERN-EP-2017-169 , arXiv:1707.02848 [hep-ph] , April 2018, Physics Letters B 779 published

  133. hengjing he, Wei Zhao, Songling Huang, Geoffrey Fox and Qing Wang, “Research on the Architecture and its Implementation for Instrumentation and Measurement Cloud" IEEE Transactions on Services Computing, 4 July 2017, DOI :10.1109/TSC.2017.2723006

  134. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low Latency Stream Processing: Twitter Heron with Infiniband and Omni-Path", Proceedings of Strata Data Conference New York NY September 26-28, 2017

  135. Mingze Xu, David J. Crandall, Geoffrey C. Fox, John D. Paden, " AUTOMATIC ESTIMATION OF ICE BOTTOM SURFACES FROM RADAR IMAGERY" Published in ICIP2017, 2017 IEEE International Conference on Image Processing, at the China National Convention Center in Beijing, China from 17-20 September 2017

  136. M. Rahnemoonfar; G. C. Fox; M. Yari; J. Paden, “[Automatic Ice
    Surface and Bottom Boundaries Estimation in Radar Imagery Based on
    Level-Set Approach](http://infomall.org/publications/ice_rev1.pdf)
    ," in IEEE Transactions on Geoscience and Remote Sensing , vol.55,
    Issue 9, pp.1-8 DOI
    10.1109/TGRS.2017.2702200

  137. Geoffrey C. Fox and Shantenu Jha, “A Tale of Two Convergences: Applications and Computing Platforms", Extended abstract for 2017 New York Scientific Data Summit ( NYSDS'17) Data-Driven Discovery in Science and Industry, August 6-9, 2017

  138. Geoffrey C. Fox, Devarshi Ghoshal, Shantenu Jha, Andre Luckow, Lavanya Ramakrishnan, “Streaming Computational Science: Applications, Technology and Resource Management for HPC" Extended abstract for 2017 New York Scientific Data Summit ( NYSDS'17) Data-Driven Discovery in Science and Industry, August 6-9, 2017

  139. Geoffrey C. Fox, Shantenu Jha, “Conceptualizing A Computing Platform for Science Beyond 2020: To Cloudify HPC, or HPCify Clouds?", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  140. Hyungro Lee and Geoffrey C. Fox, “Efficient Software Defined Systems using Common Core Components", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  141. Langshi Chen, Bo Peng, Bingjing Zhang, Tony Liu, Yiming Zou, Lei Jiang, Robert Henschel, Craig Stewart, Zhang Zhang, Emily Mccallum, Tom Zahniser, Jon Omer, Judy Qiu, “Benchmarking Harp-DAAL: High Performance Hadoop on KNL Clusters ", Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, Hawaii

  142. Hyungro Lee, “Software Defined Systems with DevOps Tools and Infrastructure Provisioning ", Ph.D. Forum at IPDPS conference Orlando FL May 30-June 2, 2017

  143. Supun Kamburugamuve, “Designing Efficient Programming Environment Toolkits for Big Data Applications: Integrating Parallel and Distributed Computing Runtimes", Ph.D. Thesis Proposal Indiana University July 6 2017

  144. Bingjing Zhang “HARP: A MACHINE LEARNING FRAMEWORK ON TOP OF THE COLLECTIVE COMMUNICATION LAYER FOR THE BIG DATA SOFTWARE STACK", Indiana University Ph.D. Thesis May 2017

  145. V. Mathieu, J. Nys, C. Fernández-Ramírez, A. Jackura, M. Mikhasenko, A. Pilloni, A. P. Szczepaniak, G. Fox, “On the η and η’ Photoproduction Beam Asymmetry at High Energies”, (Joint Physics Analysis Center) Arxiv 1704.07684 JLAB-THY-17-2450 April 25, 2017. Published DOI Physics Letters B Volume 774, 10 November 2017, Pages 362-367

  146. Jim Bottum, Dustin Atkins, Alan Blatecky, Rick McMullen, Todd Tannenbaum, Jan Cheetham, Jim Wilgenbusch, Karan Bhatia, Erik Deumens, Barr von Oehsen, Geoffrey C. Fox, Marcin Ziolkowski, Asbed Bedrossian, Dan Fay, “The Future of Cloud for Academic Research Computing", Results of an NSF-Supported Cloud Forward Workshop Washington DC, Westin Hotel, December 7-8 2016

  147. Geoffrey C. Fox and Shantenu Jha, “HPC in a Mist of Cloud Technologies and Infrastructures", Internal Report April 8, 2017

  148. Zhao Zhao, Meng Li, Guanying Wang, Ali Butt, Maleq Khan, Madhav Marathe, Judy Qiu, Anil Vullikanti, “Finding and counting subgraphs using MapReduce", April 2017

  149. Bingjing Zhang, Bo Peng, Judy Qiu, "Parallelizing Big Data Machine Learning Applications with Model Rotation", in the book series on Advances in Parallel Computing published by IOS Press, 2017.

  150. Fox, Geoffrey; Jha, Shantenu; Ramakrishnan, Lavanya; " STREAM2016: Streaming Requirements, Experience, Applications and Middleware Workshop", Final Report of Workshop March 22-23 2016 at Washington DC, LBNL--1006355 October 1, 2016

  151. Hyungro Lee, “Building Software Defined Systems on HPC and Clouds", PhD Proposal Indiana University February 19 2017

  152. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Tutorial Program ", BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017 DOI

  153. Badi’ Abdul-Wahid, Hyungro Lee, Gregor von Laszewski, and Geoffrey Fox, “Scripting Deployment of NIST Use Cases" Technical Report January 20 2017 DOI

  154. Geoffrey Fox,"Approaches to Physical Optimization", Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, Houston, Texas, USA, March 25-27, 1991 DOI

  155. Geoffrey Fox, “Special Issue on Java Technologies for Real-Time and Embedded Systems JTRES2013", Concurrency and Computation: Practice and Experience, 2017.

  156. Pulasthi Wickramasinghe, Geoffrey Fox, “Similarities and Differences Between Parallel Systems and Distributed Systems", Technical Report January 20 2017

  157. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox, “Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink", The International Journal of High Performance Computing Applications, July 2, 2017 DOI

  158. Jangwon Lee, Jingya Wang, David Crandall, Selma Sabanovic, and Geoffrey Fox, Real-Time, "Cloud-based Object Detection for Unmanned Aerial Vehicles", The First IEEE International Conference on Robotic Computing Taichung, Taiwan April 10-12 2017

  159. Mohanad Al-Ibadi, Jordan Sprick, Sravya Athinarapu, Theresa Stumpf, John Paden, Carl Leuschen, Fernando Rodríguez, Mingze Xu, David Crandall, Geoffrey Fox, David Burgess, Martin Sharp, Luke Copland, and Wesley Van Wychen, “DEM EXTRACTION OF THE BASAL TOPOGRAPHY OF THE CANADIAN ARCHIPELAGO ICE CAPS VIA 2D AUTOMATED LAYER-TRACKER", Technical report January 9 2017, 2017 IEEE International Geoscience and Remote Sensing Symposium , July 23–28, 2017, Fort Worth, Texas, USA

  160. Maryam Rahnemoonfar, Amin Abbasi Habashi, John Paden, Geoffrey C. Fox, “AUTOMATIC ICE THICKNESS ESTIMATION IN RADAR IMAGERY BASED ON CHARGED PARTICLES CONCEPT", Technical report January 9 2017, 2017 IEEE International Geoscience and Remote Sensing Symposium , July 23–28, 2017, Fort Worth, Texas, USA

  161. Supun Kamburugamuve, “Demonstration of Turtlebot controlled in cloud", for CES 2017 Las Vegas January 5-8, 2017.

  162. J. Nys, V. Mathieu, C. Fernández-Ramírez, A. N. Hiller Blin, A. Jackura, M. Mikhasenko, A. Pilloni, A. P. Szczepaniak, G. Fox, J. Ryckebusch, “Finite-Energy Sum Rules in Eta Photoproduction off the Nucleon", arXiv link . Phys. Rev. D 95, 034014 – Published 15 February 2017

  163. Ahmet Sayar, Marlon Pierce, Geoffrey C. Fox, “An adaptive range-query optimization technique with distributed replicas", Central South University Press and Springer, Journal of Central South University, January 2014, Volume 21, Issue 1, pp 190–198. DOI: 10.1007/s11771-014-1930-7

  164. Davis CA, Ciampaglia GL, Aiello LM, Chung K, Conover MD, Ferrara E, Flammini A, Fox GC, Gao X, Gonçalves B, Grabowicz PA, Hong K, Hui P, McCaulay S, McKelvey K, Meiss MR, Patil S, Peli Kankanamalage C, Pentchev V, Qiu J, Ratkiewicz J, Rudnick A, Serrette B, Shiralkar P, Varol O, Weng L, Wu T, Younge AJ, Menczer F. (2016) “OSoMe: the IUNI observatory on social media” . PeerJ Computer Science 2 : e87 DOI for paper and preprint

  165. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham)” Datanet: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science NSF14-43054 Progress Report " July 2016 21 month Project Report

  166. Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Geoffrey Charles Fox, “Java Thread and Process Performance for Parallel Machine Learning on Multicore HPC Clusters", Technical Report August 8 2016, DOI Published in 2016 IEEE International Conference on Big Data, December 5 - December 8, 2016 • Washington DC, USA with this version .

  167. James Fox, Yiming Zou, Judy Qiu “Software Frameworks for Deep Learning at Scale" with summary “RaPyDLI Deep Learning Framework" Internal Indiana University Technical Report July 29 2016

  168. Dennis Gannon, “A Quick Dive into Cloud Data Streaming Technology", paper adapted from the blog at www.esciencegroup.com May 24 2016

  169. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, Supun Kamburugamuve, “White Paper: Big Data, Simulations and HPC Convergence", Technical Report May 20 2016 DOI . Presented at BDEC Frankfurt workshop June 16 2016

  170. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena, Milinda Pathirage, Geoffrey Fox, “TSmap3D: Browser Visualization of High Dimensional Time Series Data", Technical report May 10 2016. Published in Advances in High Dimensional Big Data (2nd Workshop) in 2016 IEEE International Conference on Big Data, December 5 - December 8, 2016 • Washington DC, USA with this version .

  171. Rick Wagner, Philip Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineti (San Diego Supercomputer Center), Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox, "User Managed Virtual Clusters in Comet", Proceedings of XSEDE All Hands Meeting , Miami July 17-21, 2016. ACM Digital Library DOI 10.1145/2949550.2949555

  172. Maryam Rahnemoonfar, Masoud Yari, Geoffrey C. Fox, “Automatic polar ice thickness estimation from SAR images", SPIE Defense + Security Conference Baltimore Convention Center April 18 2016

  173. Hengjing He, Wei Zhao, Songling Huang, Geoffrey C. Fox, "Research on the Architecture and its implementation for Instrumentation and Measurement Cloud", Technical Report February 2016

  174. Bingjing Zhang, Peng Bo, Judy Qiu, “Model Data-Centric Computation Abstractions in Machine Learning Applications", in 3rd Workshop on Algorithms and Systems for MapReduce and Beyond (BeyondMR2016), held in conjunction with SIGMOD/PODS2016 , July 1, 2016

  175. Bingjing Zhang, Bo Peng, Judy Qiu, “High Performance LDA through Collective Model Communication Optimization”, Proceedings of International Conference on Computational Science ( ICCS2016) conference, June 6-8, 2016, San Diego, California.

  176. Bingjing Zhang,"A Collective Communication Layer for the Software Stack of Big Data Analytic s", Doctoral Symposium. Proceedings of IEEE International Conference on Cloud Engineering ( IC2E2016) Conference, April 4-8, 2016, Berlin, Germany.

  177. Sangyoon Oh, Mehmet Aktas, Marlon Pierce, Geoffrey Fox, " Architecture for high-performance web service communications using an information service", WSEAS Transactions on Computers, Issue 7 Vol. 5, July 2006.

  178. Hyungro Lee, Min Su Lee, Wazim Mohammed Ismail, Mina Roh, Sangyoon Oh, Geoffrey C. Fox, Haixu Tang, "MGEScan: a Galaxy based system for identifying retrotransposons in genomes", Published in Bioinformatics (2016) 32 (16): 2502-2504, Oxford Journal 2016 DOI

  179. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, and Supun Kamburugamuve, “Big Data, Simulations and HPC Convergence " Technical Report January 30 2016. DOI: 10.13140/RG.2.1.1858.8566 for WBDB 2015 Seventh Workshop on Big Data Benchmarking, New Delhi India, December 14, 2015. Published in Springer Lecture Notes in Computer Science LNCS 10044 DOI

  180. Supun Kamburugamuve, Saliya Ekanayake, Milinda Pathirage, Geoffrey Fox, “Towards High Performance Processing of Streaming Data in Large Data Centers " Technical Report January 26 2016. Published in proceedings of HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016

  181. Andrew J. Younge, Christopher Reidy, Robert Henschel, Geoffrey C. Fox, “Evaluation of SMP Shared Memory Machines for Use With In-Memory and OpenMP Big Data Applications", Technical Report January 23 2016. Published in proceedings of HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016. 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), May 2016, pp. 1597-1606.

  182. Ahmet F. Mustacoglu, Ahmet E. Topcu, Ferhat O. Catak, Geoffrey C. Fox, “Cloud-enabled Digital Information Service Framework", Technical Report January 20 2016

  183. Supun Kamburugamuve and Geoffrey Fox, "Survey of Distributed Stream Processing" , Technical Report January 8 2016

  184. Saliya Ekanayake, Supun Kamburugamuve and Geoffrey Fox, “SPIDAL: High Performance Data Analytics with Java and MPI on Large Multicore HPC Clusters ", Technical Report January 5 2016; Proceedings of 24th High Performance Computing Symposium (HPC 2016), April 3-6, 2016, Pasadena, CA, USA as part of the SCS Spring Simulation Multi-Conference (SpringSim'16)

  185. DELSA Global (18 authors including Geoffrey Fox and led by Eugene Kolker), “In praise of open research measures " Nature, 06/13/print, 2013. 498(7453): p. 170-170. DOI:10.1038/498170b or ResearchGate , December 2012

  186. Jangwon Lee, Jingya Wang, David Crandall, Selma Sabanovic and Geoffrey Fox, “Real-Time Object Detection for Unmanned Aerial Vehicles based on Cloud-based Convolutional Neural Networks", Technical Report December 2015

  187. Tak Lon (Stephen) Wu, Judy Qiu, Towards an Understanding of Scalable Query and Data Analysis for Social Media Data and Analysis on High-Level Dataflow Systems , MTAGS workshop , SC15 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015

  188. Bingjing Zhang, Bo Peng, Judy Qiu, Parallel LDA Through Synchronized Communication Optimizations , Technical report November 16 2015.

  189. Supun Kamburugamuve, Saliya Ekanayake, Pulasthi Wickramasinghe, Milinda Pathirage and Geoffrey Fox, Dimension Reduction and Visualization of the Structure of Financial Systems , Technical Report November 26 2015. WebPlotViz Homepage

  190. Geoffrey L. House, Saliya Ekanayake, Yang Ruan, Ursel Schütte, Wittaya Kaonongbua, Geoffrey Fox, Yuzhen Ye, James D. Bever, " Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering ", Applied and Environmental Microbiology, American Society of Microbiology, June 3 2016. DOI .

  191. Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan, “STREAM2015 Final Report" of Workshop Indianapolis October 27-28, 2015. DOI

  192. Supun Kamburugamuve, Geoffrey C. Fox, Streaming Applications for IOT with Real Time QoS , Streaming and Steering Applications: Requirements and Infrastructure STREAM2015 workshop white paper October 27-29 2015

  193. Geoffrey Fox, Sidd Maini, Howard Rosenbaum, David Wild, Data Science and Online Education , Proceedings of DTW: 2015 Data Teaching Workshop – 2nd IEEE STC CC and RDA Workshop on Curricula and Teaching Methods in Cloud Computing, Big Data, and Data Science as part of CloudCom 2015 , Vancouver, Nov 30-Dec 3, 2015.

  194. Maryam Rahnemoonfar, Geoffrey C. Fox, Masoud Yari, Automatic Bedrock and Ice Layer Boundaries Estimation in Radar Imagery Based on Level Set Approach , Technical report September 17 2015

  195. Ahmet F. Mustacoglu, Geoffrey C. Fox, "A novel digital information service for federating distributed digital entities", Information Systems, Volume 55, January 2016, Pages 20–36

  196. Jahanzeb Maqbool, Sangyoon Oh, Geoffrey C. Fox, "Evaluating ARM HPC clusters for scientific workloads", DOI Concurrency and Computation: Practice and Experience Volume 27, Issue 17, 10 December 2015, Pages 5390–5410

  197. Geoffrey Fox, Judy Qiu, Shantenu Jha, and Supun Kamburugamuve, Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies , Technical report August 22 2015

  198. Supun Kamburugamuve, Hengjing He, Geoffrey Fox, and David Crandall, “Cloud-based Parallel Implementation of SLAM for Mobile Robots” . Technical report July 18 2015.Published in International Conference on Internet of things and Cloud Computing (ICC 2016) The Møller Centre-CHURCHILL COLLEGE, Cambridge, United Kingdom, March 22-23 2016

  199. Gregor von Laszewski, Cloudmesh Virtual Cluster Management for Data Intensive Applications , DePy 2015 1st Annual Conference on Python applications in Data Analysis, Machine Learning, and Web, Chicago, Ill, May 29-30 2015

  200. Hengjing He, Supun Kamburugamuve, and G.C. Fox, Cloud based real-time multi-robot collision avoidance for swarm robotics Technical Report, May 7, 2015. Published in International Journal of Grid and Distributed Computing.

  201. V. Mathieu, I. V. Danilkin, C. Fernández-Ramírez, M. R. Pennington, D. Schott, A. P. Szczepaniak, G. Fox, Toward Complete Pion Nucleon Amplitudes , JLAB-THY-15-205 arXiv:1506.01764 June 5 2015. Phys. Rev. D 92, 074004 (2015)

  202. V. Mathieu, G. Fox, A. P. Szczepaniak, Neutral Pion Photoproduction in a Regge Model , arXiv:1505.02321 , May 9 2015. Phys. Rev. D 92, 074013 (2015) .

  203. Tak-Lon Wu, Bingjing Zhang, Clayton Davis, Emilio Ferrara, Sandra Flammini, Filippo Menczer, Judy Qiu, Scalable Query and Analysis for Social Networks: An Integrated High-Level Dataflow System with Pig and Harp, technical report, May 2015

  204. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack Invited talk at 2nd International Workshop on Scalable Computing For Real-Time Big Data Applications (SCRAMBL'15) May 4 2015 at.CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China

  205. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow, Implications of the HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack for workflows , Technical report May 17 2015. Submitted to Workshop on the Future of Scientific Workflows, Washington DC April 20-21 2015

  206. Geoffrey Fox, Shantenu Jha, and Lavanya Ramakrishnan, Scalable HPC Workflow Infrastructure for Steering Scientific Instruments and Streaming Applications . Technical report April 14 2015. Submitted to Workshop on the Future of Scientific Workflows, Washington DC April 20-21 2015

  207. Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox, Jilu Li, John Paden, Scalability Analysis of the Multi-Look Time Domain Processor on XSEDE Compute Resources , Technical report April 2015

  208. Judy Qiu, Bingjing Zhang, Thomas Wiggins, Implementing High Performance Computing with the Apache Big Data Stack: Experience with Harp , Globus World April 14-15 2015 Argonne National Laboratory (near Chicago Illinois, USA.

  209. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies March 9 2015. See web site

  210. Geoffrey Fox, Supun Kamburugamuve, Hengjing He Current and Planned IoT Cloud Research at Digital Science Center March 5 2015 and updated June 20 2015

  211. Geoffrey C. Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Proceedings of 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday Annapolis October 14 2014 DOI ACM Proceedings

  212. Geoffrey C. FOX, Shantenu JHA, Judy QIU, Saliya EKANAYAKE and Andre LUCKOW Towards a Comprehensive Set of Big Data Benchmarks Technical Report submitted for publication February 15 2015. Chapter in Big Data and High Performance Computing, Lucio Grandinetti and Gerhard Joubert, Editors. 2015, IOS. DOI

  213. Saliya Ekanayake Towards a Systematic Approach to Big Data Benchmarking Indiana University PhD Thesis Proposal February 4 2015

  214. Andrew J. Younge, John Paul Walters, Stephen P. Crago, Geoffrey C. Fox Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirect 11th ACM SIGPLAN/SIGOPS International Conference on Virtual Execution Environment ( VEE'15) Istanbul March 14-15 2015

  215. Geoffrey Fox, Shantenu Jha, Judy Qiu, Andre Luckow; Ogres: A Systematic Approach to Big Data Benchmarks (also here) White paper at workshop on Big Data and Extreme-scale Computing ( BDEC) Barcelona, January 29 to January 30, 2015, Barceló Sants Hotel

  216. Xiaoming Gao (Advisor Judy Qiu) Scalable Architecture for Integrated Batch and Streaming Analysis of Big Data Indiana University PhD Thesis Exam January 21 2015

  217. E. Kolker and others including Geoffrey Fox, Towards more transparent and reproducible omics studies through a common metadata checklist and data publications Big Data Journal, Volume 1, Number 4, 2013

  218. E. Kolker and others including Geoffrey Fox, Towards more transparent and reproducible omics studies through a common metadata checklist and data publications , OMICS. 2014 Jan. 18(1):10-4. doi: 10.1089/omi.2013.0149.

  219. Geoffrey Fox FutureGrid NSF Outcomes Technical Report January 11 2015

  220. Sidd Maini and Geoffrey Fox, Building a Culturally Sensitive portal for Indigenous Nations Unpublished Technical report on e-humanity project

  221. Sidd Maini, Final NEH Narrative , Unpublished Technical report on e-humanity project Dec 21 2012

  222. Bingjing Zhang, Yang Ruan, Judy Qiu Harp: Collective Communication on Hadoop IEEE International Conference on Cloud Engineering ( IC2E) conference Tempe AZ March 9-12 2015

  223. Judy Qiu, Geoffrey Fox, Shantenu Jha Kaleidoscope of (Apache) Big Data Stack (ABDS) and HPC Technologies December 24 2014 Technical Report December 24 2014. See web site .updated as March 9 2015 and May 31 2015

  224. M. Battaglieri, B. J. Briscoe, A. Celentano, S.-U. Chung, A. D'Angelo, R. De Vita, M. Döring, J. Dudek, S. Eidelman, S. Fegan, J. Ferretti, G. Fox, G. Galata, H. Garcia-Tecocoatzi, D. I. Glazier, B. Grube, C. Hanhart, M. Hoferichter, S. M. Hughes, D. G. Ireland, B. Ketzer, F. J. Klein, B. Kubis, B. Liu, P. Masjuan, V. Mathieu, B. McKinnon, R. Mitchell, F. Nerling, S. Paul, J. R. Pelaez, J. Rademacker, A. Rizzo, C. Salgado, E. Santopinto, A. V. Sarantsev, T. Sato, T. Schlüter, M. L. L. da Silva, I. Stankovic, I. Strakovsky, A. Szczepaniak, A. Vassallo, N. K. Walford, D. P. Watts, L. Zana Analysis Tools for Next-Generation Hadron Spectroscopy Experiments Proceedings of the ATHOS 2012 and ATHOS 2013 meetings in ArXiv 30 March 2015

  225. Hyungro Lee PhD Qualifying paper Virtualization Basics: Understanding Techniques and Fundamentals December 8 2014

  226. Hyungro Lee PhD Qualifying paper Using Bioinformatics Applications on the Cloud December 8 2014

  227. Supun Kamburugamuve, Leif Christiansen, Geoffrey Fox A Framework for Real-Time Processing Processing of Sensor Data in the Cloud , Journal of Sensors, 2015. 2015: p. 11. DOI:10.1155/2015/468047.

  228. Andrew Younge, John Paul Walters, Geoffrey Fox Supporting High Performance Molecular Dynamics in Virtualized Clusters using IOMMU, SR-IOV, and GPUDirect Technical report submitted for publication November 25, 2014

  229. Bingjing Zhang, Yang Ruan, Judy Qiu Harp: Collective Communication on Hadoop Technical Report November 17 2014

  230. Xiaoming Gao, Emilio Ferrara, Judy Qiu Parallel Clustering of High-Dimensional Social Media Data Streams Technical Report November 8 2014. Presented at CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China

  231. Shrideep Pallickara and Geoffrey Fox Routing events using the Grid Event Service Technical Report

  232. Saliya Ekanayake and Geoffrey Fox Parallel Java Performance with additional new results one and two Technical Report October 12 2014

  233. Tak Lon Wu, Abhilash Koppula, Judy Qiu Integrating Pig with Harp to Support Iterative Applications with Fast Cache and Customized Communication 5th International Workshop on Data Intensive Computing in the Clouds (DataCloud) 2014

  234. Geoffrey C.Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Original Paper for 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday Annapolis October 14 2014 DOI

  235. Yang Ruan Study of Conjugate Gradient in WDA-SMACOF and Fixed Points Technical Report August 22 2014

  236. Yang Ruan Displaying Phylogenetic Tree with 3D Clustering Technical Report August 22 2014

  237. Geoffrey Fox and Wo Chang Big Data Use Cases and Requirements to be published in proceedings of 1st Big Data Interoperability Framework Workshop: Building Robust Big Data Ecosystem ISO/IEC JTC 1 Study Group on Big Data March 18 - 21, 2014 San Diego Supercomputer Center, San Diego, CA, USA

  238. Judy Qiu, Shantenu Jha, Andre Luckow, Geoffrey C.Fox Towards HPC-ABDS: An Initial High-Performance BigData Stack to be published in proceedings of 1st Big Data Interoperability Framework Workshop: Building Robust Big Data Ecosystem ISO/IEC JTC 1 Study Group on Big Data March 18 - 21, 2014 San Diego Supercomputer Center, San Diego, CA, USA

  239. Geoffrey C Fox, Judy Qiu, and Shantenu Jha Integrating the Apache Big Data Stack with HPC for Big Data in AGU Fall Meeting , Session IN025: Leveraging Enabling Technologies and Architectures to enable Data Intensive Science - Abstract of Invited Talk. August 7, 2014. San Francisco, 15-19 December 2014

  240. Andrew J. Younge, John Paul Walters, Geoffrey C. Fox High Performance Molecular Dynamics in Cloud Infrastructure with SR-IOV and GPUDirect Poster August 7 2014

  241. Natiele Bohn, Oliver Lewis, Gregor von Laszewski, Fugang Wang Cloudmesh Resource Reservation Poster at Indiana University Summer REU Program July 25 2014

  242. Jefferson Ridgeway, Ifeanyi Rowland Onyenweaku, Gregor von Laszewski, Fugang Wang A Project Management Framework for Cloud and HPC Resource Providers Poster at Indiana University Summer REU Program July 25 2014

  243. Leif Christiansen, Supun Kamburugamuva, Geoffrey Fox Building a Cloud Control Framework for the TurtleBot Poster at Indiana University Summer REU Program July 25 2014

  244. Lorander Saggu, Saliya Ekanayake, Yang Ruan, Gregor von Laszewski, Geoffrey Fox Genomic Sequence Analysis Automation Poster at Indiana University Summer REU Program July 25 2014

  245. Nigel Pugh, Tori Wilbon, Saliya Ekanayake Evaluating the Performance of MPI Java in FutureGrid Poster at Indiana University Summer REU Program July 25 2014

  246. Tatyana Mathews, Scott McCaulay Apache Big Data Stack Poster at Indiana University Summer REU Program July 25 2014

  247. Geoffrey C.Fox, Shantenu Jha, Judy Qiu, Andre Luckow Towards an Understanding of Facets and Exemplars of Big Data Applications Technical Report July 20 2014

  248. Gregor von Laszewski and Geoffrey C. Fox The FutureGrid Testbed for Big Data Book Chapter in Cloud Computing for Data-Intensive Applications, editors Xiaolin Li and Judy Qiu Springer Verlag New York 2014 10.1007/978-1-4939-1905-5 ISBN 978-1-4939-1904-8

  249. Geoffrey Fox Experience with Online Teaching June 10 2014 Internal memo. Slideshare

  250. Geoffrey Fox Big Data at the Intersection of Clouds and HPC The 2014 High Performance Computing "c0"> Conference (HPCS 2014) July 21 - 25, 2014 Bologna, Italy

  251. Stefan Lee Jerome Mitchell David J. Crandall and Geoffrey C. Fox ESTIMATING BEDROCK AND SURFACE LAYER BOUNDARIES AND CONFIDENCE INTERVALS IN ICE SHEET RADAR IMAGERY USING MCMC The International Conference on Image Processing (ICIP) Paris France October 27-29 2014

  252. Yang Ruan Scalable and Robust Clustering and Visualization for Large-scale Bioinformatics Data Indiana University PhD Thesis Abstract June 9 2014

  253. John Paul Walters, Andrew J. Younge, Dong-In Kang, Ke-Thia Yao, Mikyung Kang, Stephen P. Crago, and Geoffrey C. Fox GPU-Passthrough Performance: A Comparison of KVM, Xen, VMWare ESXi, and LXC for CUDA and OpenCL Applications Applications "c0"> Conference on Cloud Computing June 27 - July 2, 2014, Alaska, USA

  254. Gregor von Laszewski, Fugang Wang, Hyungro Lee, Heng Chen and Geoffrey C. Fox, Accessing Multiple Clouds with Cloudmesh BigSystem 2014 workshop at The ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)

  255. Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schütte, James D. Bever, Haixu Tang and Geoffrey Fox Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions FIRST INTERNATIONAL WORKSHOP ON CLOUD FOR BIO (Bio 2014) to be held as part of CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  256. Xiaoming Gao and Judy Qiu Supporting Queries and Analyses of Large-Scale Social Media Data with Customizable and Scalable Indexing Techniquesover NoSQL Databases PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  257. Andrew Younge and Geoffrey Fox Advanced Virtualization Techniques for High Performance Cloud Cyberinfrastructure PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  258. Thilina Gunarathne, Judy Qiu and Dennis Gannon Towards a Collective Layer in the Big Data Stack CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014

  259. Andrew J. Younge, John Paul Walters, Stephen Crago, Geoffrey C. Fox Evaluating GPU Passthrough in Xen for High Performance Cloud Computing High-Performance Grid and Cloud Computing Workshop May 19, 2014, Phoenix, Arizona, USA in conjunction with International Parallel and Distributed Processing Symposium - IPDPS 2014

  260. Bingjing Zhang and Yang Ruan Harp: Collective Communication on Hadoop Internal memo June 2 2014

  261. Sherif Abdelhamid, Maksudul Alam, Richard Alo, Shaikh Arifuzzaman, Pete Beckman, Tirtha Bhattacharjee, Hasanuzzaman Bhuiyan, Keith Bisset, Stephen Eubank, Albert C. Esterline, Edward A. Fox, Geoffrey C. Fox, S.M.Shamimul Hasan, Harshal Hayatnagarkar, Maleq Khan, Chris J. Kuhlman, Madhav V. Marathe, Natarajan Meghanathan, Henning S. Mortveit, Judy Qiu, S.S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Samarth Swarup, Anil Kumar S. Vullikanti, and Tak-Lon Wu CINET 2.0: A CyberInfrastructure for Network Science May 19 2014 Technical Report published in The 10th IEEE International Conference on e-Science Guarujá, SP, Brazil 20th – 24th October 2014

  262. Jahanzeb Maqbool, Sangyoon Oh, Geoffrey C. Fox Evaluating Energy Efficient HPC Clusters for Scientific Workloads Internal memo May 14 2014

  263. JUSTIN M DELOATCH Utilizing HUBzero to Create and Test an Educational Hub from CReSIS Educational Data Elizabeth City State University Masters Thesis April 17 2014

  264. Mashar Cenk Gencal Summary of Robust Scalable Visualized Clustering in Vector and non Vector Semimetric Spaces Independent Study Indiana University April 15 2014

  265. Sun Zhanquan, Geoffrey Fox, Gu Weidong A Parallel Clustering Method Combined Information Bottleneck Theory and Centroid-based Clustering Internal Report April 8 2014, The Journal of Supercomputing 69(1):452-467 · July 2014 DOI

  266. Feng Xie, Zhen Chen, Jiaxing Shang, Geoffrey C. Fox Grey forecast model for accurate recommendation in presence of data sparsity and correlation Knowledge-Based Systems (Elsevier) to be published April 5 2014

  267. Fugang Wang, Gregor von Laszewski, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon and Steven M. Gallo Towards a Scientific Impact Measuring Framework for Large Computing Facilities - a Case Study on XSEDE Accelerating Discovery in Scholarly Research XSEDE14 All Hands Meeting July 13-18 Atlanta

  268. Richard L. Moore, Chaitan Baru, Diane Baxter, Geoffrey C. Fox, Amit Majumdar, Phillip Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Shawn Strande, Mahidhar Tatineni, Richard P. Wagner, Nancy Wilkins-Diehr, Michael L. Norman Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science Technology Track XSEDE14 All Hands Meeting July 13-18 Atlanta

  269. Hyungro Lee, Gregor von Laszewski, Fugang Wang and Geoffrey Fox Towards Understanding Cloud Usage through Resource Allocation Analysis on XSEDE Technical Report March 25 2014

  270. Geoffrey Fox and Ilkay Altintas Big Data Use Cases: Progress and Futures Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  271. Shantenu Jha, Judy Qiu and Geoffrey Fox HPBDS: The Case for an Integrating Apache Big Data Stack with HPC Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  272. Geoffrey Fox, Judy Qiu, Shantenu Jha Understanding Big Data Applications and Architectures Abstract for 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014

  273. Minh Duc Nguyen, Min Su Lee, Sangyoon Oh and Geoffrey C. Fox SPARQL Query Optimization for Structural Indexed RDF Data Technical Report March 11 2014

  274. Saliya Ekanayake Evaluation of Java Message Passing in High Performance Data Analytics Technical Report March 9 2014

  275. Shantenu Jha, Judy Qiu, Andre Luckow, Pradeep Mantha, and Geoffrey C.Fox, A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures Preprint March 6 2014 to be published in Application and Experience track of 3rd International Congress on Big Data June 27 - July 2, 2014, Anchorage, Alaska, USA. Another unpublished version

  276. Ahmet F. Mustacoglu and Geoffrey Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report March 5 2014

  277. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical report February 21 2014

  278. Geoffrey Fox, Judy Qiu and Shantenu Jha High Performance High Functionality Big Data Software Stack or local white paper, International Workshop on Extreme Scale Scientific Computing (Big Data and Extreme Computing (BDEC)) Fukuoka Japan February 27 2014

  279. Jerome Mitchell PhD Qualifying paper Near surface layers and global climate change with its implications for sea level rise February 19 2014

  280. Jerome Mitchell PhD Qualifying paper Global optimization techniques, specifically simulated annealing, genetic algorithms, and tabu search February 17 2014

  281. Jerome Mitchell PhD Qualifying paper Research in Layer Identification February 17 2014

  282. Geoffrey Fox FutureGrid Summary January 31 2014

  283. Marco Battaglieri, Bill Briscoe, Su-Urk Chung, Geoffrey Fox, Bernhard Ketzer, Vincent Mathieu and Adam Szczepaniak Analysis Tools for Next Generation Hadron Spectroscopy Experiments February 13 2014 summary of ATHOS 2013 Kloster Seon, Germany, May 20-24, 2013 and ATHOS 2012 International Workshop on NEW PARTIAL WAVE ANALYSIS TOOLS FOR NEXT GENERATION HADRON SPECTROSCOPY EXPERIMENTS, June 20-23, 2012

  284. Judy Qiu, Geoffrey Fox Community MOOC's for Computing Technologies and Applications Report on SC13 Birds of a Feather November 20 2013

  285. Thilina Gunarathne, Thomas Wiggins, Judy Qiu Collective Communication Patterns for Iterative MapReduce Technical Report October 11 2013

  286. Bingjing Zhang and Judy Qiu Harp project Summary Technical Report January 12 2014

  287. Xiaoming Gao Investigation and Comparison of Distributed NoSQL Database Systems Technical Report December 21 2013

  288. TAK LON (Stephen) WU, Thomas Wiggins, Judy Qiu CINET Collaboration Report October 13 2013

  289. Supun Kamburugamuve Survey of Apache Big Data Stack Technical report December 19 2013. This motivated the ABDS (Apache Big Data Stack) Kaleidoscope

  290. Supun Kamburugamuve Survey of Distributed Stream Processing for Large Stream Sources Technical report December 19 2013

  291. Supun Kamburugamuve Survey of Streaming Data AlgorithmsSurvey of Streaming Data Algorithms Technical report December 19 2013

  292. Xiaoming Gao and Judy Qiu Supporting End-to-End Social Media Data Analysis with the IndexedHBase Platform Invited talk at 6th Workshop on Many-Task Computing on Clouds, Grids, and Supercomputers (MTAGS) 2013, November 17 2013 at SC13

  293. E. Kolker and others including Geoffrey Fox, "Towards more transparent and reproducible omics studies through a common metadata checklist and data publications", Big Data journal to be published, December 2013

  294. Thilina Gunarathne, Judy Qiu and Dennis Gannon Towards a Collective Layer in the Big Data Stack Technical Report November 18 2013

  295. Zhanquan Sun and Geoffrey Fox Traffic Flow Forecasting Based on Combination of Multidimensional Scaling and SVM International Journal of Intelligent Transportation Systems Research November 2013 DOI

  296. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical Report November 18 2013

  297. Sanghyuk Park, Jai-Hoon Kim and Geoffrey Fox, Effective Real-Time Scheduling Algorithms for Cyber Physical Systems Society , Future Generation Computing Systems 30 October 2013 DOI

  298. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a MapCollective Programming Model Technical Report October 27 2013

  299. Yang Ruan and Geoffrey Fox A Robust and Scalable Solution for Interpolative Multidimensional Scaling with Weighting 9th International conference on e-Science 22-25 October 2013 ( Best Student Paper) DOI

  300. Thilina Gunarathne, Thomas Wiggins, Judy Qiu Collective Communication Patterns for Iterative MapReduce Report to Microsoft on Azure use October 11 2013

  301. Bingjing Zhang, Judy Qiu, Stefan Lee, David Crandall Large-Scale Image Classification using High Performance Clustering Technical Report October 7 2013

  302. TAK LON (Stephen) WU, Thomas Wiggins, Judy Qiu CINET Collaboration Report Technical Report October 6 2013

  303. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a Map-Collective Programming Model Poster at ACM Symposium on Cloud Computing 2013 Santa Clara CA October 1-3 2013

  304. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, Maryam Rahnemoonfar and John D. Paden A Semi-Automatic Approach for Estimating Bedrock and Surface Layers from Multichannel Coherent Radar Depth Sounder Imagery SPIE Remote Sensing Conference 23 - 26 September 2013 in Dresden, Germany, in Proc. SPIE 8892, Image and Signal Processing for Remote Sensing XIX. October 17, 2013: Vol. 8892. pages. 88921E-88921E-6. DOI .

  305. Hui Li, Geoffrey Fox, Gregor von Laszewski, Arun Chauhan Co-processing SPMD computation on CPUs and GPUs cluster IEEE Cluster Conference Indianapolis September 23-27 2013 DOI

  306. Andrew J. Younge, John Paul Walters, Steve Crago, Geoffrey C. Fox Enabling High Performance Computing in Cloud Infrastructure using Virtualized GPUs Technical Report September 24 2013

  307. Bingjing Zhang and Judy Qiu High Performance Clustering of Social Images in a Map-Collective Programming Model Technical Report September 3 2013

  308. Xiaoming Gao, Evan Roth, Karissa McKelvey, Clayton Davis, Andrew Younge, Emilio Ferrara, Filippo Menczer, Judy Qiu Supporting a Social Media Observatory with Customizable Index Structures - Architecture and Performance Technical Report September 3 2013, Book chapter to appear in Cloud Computing for Data Intensive Applications, to be published by Springer Publisher, 2014

  309. Ilya Baldin, José Fortes, Ian Foster, Geoffrey Fox Big Data Grand Challenge for Terabit Networks White paper for OSA Incubator and NSF Workshop on Scaling Terabit Networks: Breaking Through Capacity Barriers and Lowering Cost with New Architectures and Technologies, August 16 2013

  310. Geoffrey Fox FutureGrid Sumnmary Technical Report August 16 2013

  311. Geoffrey Fox Minutes of 2020-2025 Scientific Computing Environments (Distributed Computing in an Exascale era) meeting at NITRD MAGIC meeting August 7 2013

  312. Geoffrey Fox, Judy Qiu Community MOOC's for Computing Technologies and Applications Accepted Proposal for SC13 Birds of a Feather July 31 2013

  313. Xiaoming Gao and Judy Qiu Efficient Cloud Storage Solutions for Data-Intensive Scientific Applications Technical Report July 31 2013

  314. Bingying Zhang, Judy Qiu High Performance Clustering of Social Images in a MapCollective Programming Model Technical Report July 2 2013

  315. Judy Qiu, Ian Foster, Carole Goble Editorial for Emerging Computational Methods for the Life Sciences Workshop Special Issue 2012 June 29 2013 To be published in Concurrency" li-bullet-0"> Geoffrey Fox , D. R. Mani, Saumyadipta Pyne Parallel Deterministic Annealing Clustering and its Application to LC-MS Data Analysis Proceedings of 2013 IEEE International Conference on Big Data October 6-9, 2013, Santa Clara, CA, USA, Technical Report June 23 2013 DOI

  316. Geoffrey Fox , D. R. Mani, Saumyadipta Pyne Detailed Results of Evaluation of DAVS(c) Deterministic Annealing Clustering and its Application to LC-MS Data Analysis Technical Report June 22 2013

  317. Tak-Lon (Stephen) Wu salsaDPI: a dynamic provisioning interface for IaaS cloud Technical Report June 25 2013

  318. Tak-Lon (Stephen) Wu MapReduce and Data Intensive Applications Technical Report June 25 2013

  319. Tak-Lon (Stephen) Wu An Overview of Present NoSQL Solutions and Features Technical Report June 25 2013

  320. Ahmet Fatih Mustacoglu, Geoffrey Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report April 2013

  321. Yang Ruan, Geoffrey Fox A Robust and Scalable Solution for Interpolative Multidimensional Scaling With Weighting Proceeeding of eScience2013, the 2013 IEEE 9th International Conference on e-Science, 23-25, October, 2013, Beijing, China

  322. Jay Parker, Andrea Donnellan, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, Jun Wang, Yu Ma Advantages to Geoscience and Disaster Response from the QuakeSim Implementation of Interferometric Radar Maps in a GIS Database System Technical Report May 24 2013 published in Pure and Applied Geophysics July 2014 DOI

  323. Geoffrey Fox Robust Scalable Visualized Clustering in Vector and non Vector Semimetric Spaces Parallel Process. Lett., 23, 1340006 (2013) [15 pages] DOI: 10.1142/S0129626413400069

  324. Judy Qiu and Bingjing Zhang Clustering Social Images with MapReduce and High Performance Collective Communication To be published in Proceedings of HPC 2012 Conference at Cetraro, Italy June 28 2012

  325. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden A SEMI-AUTOMATIC APPROACH FOR ESTIMATING NEAR SURFACE INTERNAL LAYERS FROM SNOW RADAR IMAGERY May 15 2013 paper at IGARSS 2013 Sunday 21 - Friday 26 July 2013 IEEE International Geoscience and Remote Sensing Symposium Melbourne, Australia "Building a Sustainable Earth through Remote Sensing"

  326. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden A Survey of Techniques for Detecting Layers in Polar Radar Imagery Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  327. Maryam Rahnemoonfar, Geoffrey Fox Ice Layer Detection from RADAR Depth Sounder Data using Novel Approach based on theory of Electrostatics Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  328. David J. Crandall, Geoffrey C. Fox AUTOMATIC IDENTIFICATION OF ICE LAYERS IN RADAR ECHOGRAMS Abstract for International Symposium on Radioglaciology, in conjunction with the International Glaciological Society from September 9 to 13, 2013 at CReSIS at the University of Kansas, Lawrence, Kansas. Online

  329. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe To be published in Concurrency"c0"> ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands, January 2013 DOI

  330. Geoffrey Fox Distributed Data and Software Defined Systems White Paper April 20 2013 BDEC Big Data and Extreme-Scale Computing Charleston April 30 to May 01 Renaissance Charleston Historic District Hotel

  331. Geoffrey Fox, Jose Fortes, Andrew Grimshaw, Kate Keahey, Warren Smith FutureGrid: An Experimental High -Performance Test-bed April 19 2013 Birds of a Feather submission to XSEDE13 : Gateway to Discovery July 22-25 2013 Marriott Marquis and Marina San Diego

  332. Geoffrey Fox Collaboration in the Cloud and Online Education Environments April 15 2013 Abstract of Invited Talk at The 2013 International Conference on Collaboration Technologies and Systems (CTS 2013) May 20-24, 2013 The Sheraton San Diego Hotel and Marina San Diego, California, USA

  333. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden An Approach to Estimating Bedrock and Surfaces Layers in Polar Radar Imagery April 1 2013 Abstract for SPIE Remote Sensing Meeting 23 - 26 September 2013 Internationales Congress Center Dresden, Germany

  334. Ilia Baldine, Jeff Chase, Geoffrey Fox , Gregor von Laszewski Federating FutureGrid and GENI White paper March 25 2013

  335. Hui Li, Geoffrey Fox, Gregor Laszewski, Judy Qiu Scalable Data Clustering Using Fermi GPUs on FutureGrid with Application Details Technical Report April 6 2013

  336. Hui Li, Geoffrey Fox, Gregor Laszewski, Judy Qiu Memo for GlobalReductions Study Technical Report April 5 2013

  337. Hui Li, Geoffrey Fox, Gregor Laszewski, Zhenhua Guo, Judy Qiu Co-processing SPMD Computation on GPUs and CPUs on Shared Memory System Technical Report January 18 2013

  338. Geoffrey Fox and Gregor von Laszewski High Performance Data Analytics Ecosystem A Proposed PTI Megaproject February 7 2013

  339. Geoffrey Fox (Indiana University, USA), Tony Hey (Microsoft Research, USA) and Anne Trefethen (Oxford University, UK) Where does all the data come from? Book Chapter in "Data Intensive Science" edited by Terence Critchlow and Kerstin Kleese Van Dam, June 3, 2013 by Chapman and Hall/CRC.

  340. Yuduo Zhou Large Scale Distributed File System Survey Technical Report January 20 2013

  341. Saliya Ekanayake Study of Biological Sequence Clustering Technical Report January 18 2013

  342. Saliya Ekanayake Survey on High Productivity Computing Systems (HPCS) Languages Technical Report January 18 2013

  343. Saliya Ekanayake Sequence Clustering Tools Technical Report January 18 2013

  344. Xiaoming Gao and Judy Qiu Scalable Inverted Indexing on NoSQL Table Storage Technical Report January 21 2013

  345. David J. Crandall, and Geoffrey C. Fox AUTOMATIC IDENTIFICATION OF ICE LAYERS IN RADAR ECHOGRAMS January 13 2013 Abstract at IGARSS 2013 Sunday 21 - Friday 26 July 2013 IEEE International Geoscience and Remote Sensing Symposium Melbourne, Australia "Building a Sustainable Earth through Remote Sensing"

  346. Geoffrey Fox and Dennis Gannon Using Clouds for Technical Computing in Proceedings of HPC 2012 Conference at Cetraro, Italy June 28 2012. Chapter in "Cloud Computing and Big Data", C. Catlett, W. Gentzsch, L. Grandinetti, G.R. Joubert, and J.L. Vazquez-Poletti, Editors. 2013, IOS Press: Cetraro, Italy.

  347. Judy Qiu and Bingjing Zhang Mammoth Data in the Cloud: Clustering Social Images Technical Report January 2 2013. Book chapter in Cloud Computing and Big Data , IOS Press, 2013, edited by Catlett, C. , Gentzsch, W., Grandinetti, L., Joubert, G.R., Vazquez-Poletti, J.L.. ISBN 978-1-61499-321-6.

  348. Shrideep Pallickara and Geoffrey Fox Recent Work in Utility and Cloud Computing Editorial of Future Generation Computer Systems Special Issue. Future Generation Computer Systems, 6//, 2013. 29(4): p. 986-987. DOI .

  349. John Rundle and Geoffrey Fox, Computational Earthquake Science, Editorial for Computing in Science and Engineering Special Issue 14(5): p. 7-9. DOI

  350. Andrea Donnellan, Jay Parker, Margaret Glasscoe, Eric De Jong, Marlon Pierce, Geoffrey Fox, Dennis McLeod, John Rundle, Davis Lisa Grant Ludwig A Distributed Approach to Computational Earthquake Science: Opportunities and Challenges April 11 2012, Computing in Science and Engineering Vol. 14(5): p. 31-42. DOI

  351. Jun Wang, Marlon E. Pierce, Yu Ma, Geoffrey C. Fox, Andrea Donnellan, Jay W. Parker, Margaret Glasscoe Using Service-Based Geographical Information System to Support Earthquake Research and Disaster Response April 5 2012, Computing in Science and Engineering 14(5): p. 21-30. DOI

  352. Shrideep Pallickara and Geoffrey Fox Enabling Hierarchical Dissemination of Streams in Content Distribution Networks Technical report August 15 2008, Concurrency and Computation: Practice and Experience. Vol. 24 (14), pp. 1594-1606. 2012.

  353. Geoffrey Fox Robust Scalable Visualized Clustering in Metric and non-Metric Spaces Submitted for Publication December 12 2012

  354. Geoffrey Fox Large scale data analytics on clouds keynote in CloudDB '12 Proceedings of the fourth international workshop on Cloud data management Pages 21-24 October 29 2012 Sheraton Maui DOI

  355. Judy Qiu, Ian Foster, Ronald Taylor Editorial for Special Issue for Emerging Computational Methods for the Life Sciences Workshop 2011 Concurrency and Computation:Practice and Experience to be published 2013

  356. Geoffrey Fox White Paper on Clouds and the Internet of Things (Sensor Clouds) November 25 2012

  357. Jonathan Klinginsmith Reproducibility and Scalability in Experimentation through Cloud Computing Technologies Doctoral Showcase November 14 2012 SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  358. Hyungro Lee; Youngik Yang; Heejoon Chae; Seungyoon Nam; Donghoon Choi; Tangchaisin, P.; Herath, C.; Marru, S.; Nephew, K.P.; Sun Kim; , BioVLAB-MMIA: A Cloud Environment for microRNA and mRNA Integrated Analysis (MMIA) on Amazon EC2 , NanoBioscience, IEEE Transactions on , vol.11, no.3, pp.266-272, Sept. 2012 DOI

  359. Saliya Ekanayake Survey on High Productivity Computing Systems (HPCS) Languages Technical report 13 November 2012

  360. Andrea Donnellan, Margaret Glasscoe, Jay W. Parker, Robert Granat, Marlon Pierce, Jun Wang, Geoffrey Fox, Dennis McLeod, John Rundle, Lisa Grant Ludwig Integrating Remotely Sensed and Ground Observations for Modeling, Analysis, and Decision Support 2013 IEEE Aerospace Conference Big Sky Montana Mar 2-9 2013

  361. Geoffrey Fox Cloud Value Proposition for Science and Engineering Technical report October 26 2012

  362. Manish Parashar, Geoffrey Fox, Kate Keahey Integrating Clouds and Cyberinfrastructure for CDS and E: Research Challenges Technical report October 26 2012

  363. Jong Youl Choi, Mohammad H. Abbasi, David Pugmire, Scott Klasky, Judy Qiu, Geoffrey Fox Mining Hidden Mixture Context With ADIOS-P To Improve Predictive Pre-fetcher Accuracy 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  364. Geoffrey Fox, Marlon Pierce, Gregor von Laszewski Cloud Computing and QuakeSim APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  365. Geoffrey Fox Radar Informatics APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  366. Jay Parker, Andrea Donnellan, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, Jun Wang, and Yu Ma Advantages to Geoscience and Disaster Response from the QuakeSim Implementation of Interferometric Radar Maps in the GeoServer GIS System APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  367. Lisa Grant Ludwig , Dennis McLeod, Andrea Donnellan, Jay Parker, Rami Al-Ghanmi, Marlon Pierce, and Geoffrey Fox Fault Data and Fault Model Provenance Issues and Challenges for QuakeSim APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012

  368. Manish Parashar and Geoffrey Fox Integrating Clouds and Cyberinfrastructure for CDS and E: Research Challenges Technical Report 30 August 2012

  369. Jonathan Klinginsmith, Judy Qiu Using Cloud Computing for Scalable, Reproducible Experimentation Technical Report 22 August 2012

  370. Robert Grossman, Michael Kozuch, Gregor von Laszewski, Rick McGeer, Dejan Milojicic Frontispiece FederatedClouds '12 Proceedings of the 2012 workshop on Cloud services, federation, and the 8th open cirrus summit Pages 25-32 September 21 2012

  371. Gregor von Laszewski, Hyungro Lee, Javier Diaz, Fugang Wang, Koji Tanaka, Shubhada Karavinkoppa, Geoffrey C. Fox , Tom Furlani Design of an Accounting and Metric-based Cloud-shifting and Cloud-seeding framework for Federated Clouds and Bare-metal Environments FederatedClouds '12 Proceedings of the 2012 workshop on Cloud services, federation, and the 8th open cirrus summit Pages 25-32 September 21 2012

  372. Hui Li, Geoffrey Fox, Judy Qiu Performance Model for Parallel Matrix Multiplication with Dryad: Dataflow Graph Runtime 2012 International Symposium on Big Data and MapReduce (BigDataMR2012) 01-03 November 2012, Xiangtan, Hunan, China

  373. Geoffrey Fox FutureGrid Annual Summary August 2012

  374. Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey Fox DACIDR: Deterministic Annealed Clustering with Interpolative Dimension Reduction using a Large Collection of 16S rRNA Sequences ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB) Orlando Florida October 7-10 2012

  375. Feng Xie, Zhen Chen, Jiaxing Shang and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation in Presence of Data Sparsity and Correlation The 2nd International Conference on Social Computing and its Applications (SCA2012), 1-3 November 2012, Xiangtan, Hunan, China

  376. Jerome E. Mitchell, David Crandall, Geoffrey Fox, and John Paden, Automatic Near Surface Estimation from Radar Imagery Abstract 2012 AGU Fall Meeting 3-7 December 2012, at the Moscone Convention Center, San Francisco, California

  377. Andrew J. Younge, John Paul Walters, Jinwoo Suh, Dong-In D. Kang, Youngsam Park, Stephen P. Crago, Geoffrey C. Fox Towards a High Performance Virtualized IaaS Deployment Poster August 1 2012

  378. Andrew J. Younge and Geoffrey C. Fox Bridging the Gap Between HPC and IaaS Technical Report August 1 2012

  379. Geoffrey Fox, José A.B. Fortes Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing Technical Report July 31 2012 Birds of a Feather on November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  380. Manish Parashar, Geoffrey Fox, Kate Keahey Science-as-a-Service: Exploring Clouds for Computational and Data-Enabled Science and Engineering Technical Report July 31 2012 Birds of a Feather on November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012

  381. Linda Hayden, Prasad Gogineni, Geoffrey C Fox, Building capacity in polar sciences Technical Report July 31 2012 in International Innovation digital magazine

  382. Sherif Elmeligy Abdelhamid, Richard Alo, S. M. Arifuzzaman, Pete Beckman, Md Hasanuzzaman Bhuiyan, Keith Bisset, Edward A. Fox, Geoffrey C. Fox, Kevin Hall, S.M.Shamimul Hasan, Anurodh Joshi, Maleq Khan, Chris J. Kuhlman, Spencer Lee, Jonathan P. Leidig, Hemanth Makkapati, Madhav V. Marathe, Henning S. Mortveit, Judy Qiu, S.S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Rajesh Subbiah, Samarth Swarup, Nick Trebon, Anil Vullikanti, and Zhao Zhao CINET: A CyberInfrastructure for Network Science Technical Report July 19 2012 and Proceedings of 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  383. Jong Youl Choi, Mohammad H. Abbasi, David Pugmire, Scott Klasky, Judy Qiu, Geoffrey Fox Mining Hidden Mixture Context With ADIOS-P To Improve Predictive Pre-fetcher Accuracy Technical Report July 19 2012 and Proceedings of 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012

  384. David J. Crandall, Geoffrey C. Fox, John D. Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models Proceedings of twenty-first conference of the International Association for Pattern Recognition (IAPR), November 11-15, 2012 at the Tsukuba International Congress Center, Tsukuba, Japan, submitted July 16 2012

  385. Gregor von Laszewski, Hyungro Lee, Javier Diaz, Fugang Wang, Koji Tanaka, Shubhada Karavinkoppa, Geoffrey C. Fox, Tom Furlani Design of an Accounting and Metric-based Cloud-shifting and Cloud-seeding framework for Federated Clouds and Bare-metal Environments Technical Report August 20 2012, Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit,September 21, 2012, San Jose, CA (USA)

  386. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Visualization of Large High-Dimensional Data via Interpolation Approach of Multidimensional Scaling Technical Report July 14 2012

  387. Geoffrey C. Fox, Gregor von Laszewski, Javier Diaz, Kate Keahey, Jose Fortes, Renato Figueiredo, Shava Smallen, Warren Smith, and Andrew Grimshaw FutureGrid - a reconfigurable testbed for Cloud, HPC and Grid Computing Chapter in "Contemporary High Performance Computing: From Petascale toward Exascale", editor Jeff Vetter, April 23, 2013 by Chapman and Hall/CRC

  388. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Scalable Parallel Computing on Clouds Using Twister4Azure Iterative MapReduce Future Generation Computer Systems To be published June 19 2012

  389. Geoffrey C. Fox, Siddharth Maini, Barbara Ann O’Leary Social Media Support of Research Technical Report June 9 2012 posted at EarthCube Governance group Ning web site with Interactive Resource

  390. Geoffrey C. Fox, Siddharth Maini, Barbara Ann O’Leary Analysis of EarthCube’s Governance Web Site Technical Report June 8 2012 posted at EarthCube Governance group Ning web site

  391. Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey Fox DACIDR: Deterministic Annealed Clustering with Interpolative Dimension Reduction using Large Collection of 16S rRNA Sequences Technical Report June 7 2012

  392. Yuduo Zhou Migration of Iterative MapReduce Runtime and Application onto Distributed File Systems Technical Report April 30 2012

  393. Feng Xie, Jiaxing Shang, Zhen Chen and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation in Presence of Data Sparsity and Correlation Technical report June 7 2012

  394. Ryan Hartman and Geoffrey Fox DRAFT Sensor Cloud Project Final Report AFRL SBIR Phase 3 Project Indiana University April 23 2012 and a Summary of Clouds

  395. Alex Ho and Geoffrey Fox GRID OF GRIDS FOR INFORMATION MANAGEMENT SBIR final report September 2008

  396. Alex Ho and Geoffrey Fox Advanced Cloud Computing Technology for Sensor Grids SBIR Final Report December 1 2010

  397. Hui Li, Geoffrey Fox, Judy Qiu Performance Model of Parallel Programs with Dryad: Dataflow Graph Runtime Technical Report May 31 2012

  398. Zhenhua Guo, Geoffrey Fox, Mo Zhou, Yang Ruan Improving Resource Utilization in MapReduce Technical Report May 31 2012

  399. Sun Zhanquan, Geoffrey Fox Large Scale Classification Based on Combination of Parallel SVM and Interpolative MDS Technical Report May 29 2012

  400. Sun Zhanquan, Geoffrey Fox A Parallel Clustering Method Study Based on MapReduce Technical Report May 29 2012

  401. Judy Qiu and Geoffrey Fox MapReduce and Data Intensive Applications Prepared May 15 2012 for Birds of a Feather at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago

  402. Geoffrey Fox, Renato Figueiredo, Barbara Ann O'Leary Hosting Cloud, HPC and Grid Educational Activities on FutureGrid Prepared May 15 2012 for Birds of a Feather at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago

  403. Furlani, T. R., M. D. Jones, S. M. Gallo, A. E. Bruno, C. - D. Lu, A. Ghadersohi, R. J. Gentner, A. Patra, R. L. DeLeon, G. von Laszewski, L. Wang, and A. Zimmerman Performance metrics and auditing framework using application kernels for high performance computer systems Concurrency and Computation: Practice and Experience to be published

  404. Sun Zhanquan, Geoffrey Fox Traffic Flow Forecasting Based on Combination of Multidimensional Scaling and SVM Technical Report May 14 2012

  405. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Visualization of Large High-Dimensional Data via Interpolation Approach of Multidimensional Scaling Technical report May 11 2012

  406. Sun Zhanquan, Geoffrey Fox Technical Report Study on Parallel SVM Based on MapReduce Report May 11 2012 Proceedings of PDPTA'12 - The 2012 International Conference on Parallel and Distributed Processing Techniques and Applications July 16-19 Las Vegas NV USA

  407. Gregor von Laszewski, Javier Diaz, Fugang Wang, Geoffrey Fox Comparison of Multiple Cloud Frameworks Technical Report May 6 2012 in Proceedings of IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA

  408. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey Fox Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures Technical Report May 6 2012 in Proceedings of IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA

  409. Bingjing Zhang, Judy Qiu Accelerating Data Transfers In Iterative MapReduce Framework Technical Report May 4 2012

  410. Jerome Mitchell, Judy Qiu, Massimo Canonico, Shantenu Jha, Linda Hadyen, Barbara Ann O’Leary, Renato Figueiredo, Geoffrey Fox FutureGrid Education: Using Case Studies to Develop A Curriculum for Communicating Parallel and Distributed Computing Concepts Presented at XSEDE12 Conference July 16-20, 2012, InterContinental (Magnificent Mile), Chicago FutureGrid education: using case studies to develop a curriculum for communicating parallel and distributed computing concepts Jerome E. Mitchell , Judy Qiu , Massimo Canonio , Shantenu Jha , Linda Hayden , Barbara Ann O'Leary , Renato Figueiredo , Geoffrey Fox XSEDE '12 Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond, 2012 frames are not supported

  411. Seung-Hee Bae, Judy Qiu, Geoffrey Fox High Performance Multidimensional Scaling for Large High-Dimensional Data Visualization Technical report April 26 2012

  412. Gabriel Antoniu, Götz Brasche, Shane Canon, Geoffrey Fox Science Clouds Experiences: Sunny, Cloudy or Rainy? Panel at Science Clouds Workshop of ACM HPDC 2012 conference at Delft the Netherlands Science clouds experiences: sunny, cloudy or rainy? Gabriel Antoniu , Götz Brasche , Shane Canon , Geoffrey Fox ScienceCloud '12 Proceedings of the 3rd workshop on Scientific Cloud Computing Date, 2012 frames are not supported

  413. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe Technical Report April 23 2012 for Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands

  414. Yang Ruan, Zhenhua Guo, Yuduo Zhou, Judy Qiu, Geoffrey Fox HyMR: a Hybrid MapReduce Workflow System Technical Report April 23 2012, Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 "c0"> HPDC 2012 conference at Delft the Netherlands

  415. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality and Fairness in MapReduce Technical Report April 23 2012 for The Third International Workshop on MapReduce and its Applications ( MAPREDUCE'12) of ACM HPDC 2012 conference at Delft the Netherlands Investigation of data locality and fairness in MapReduce Zhenhua Guo , Geoffrey Fox , Mo Zhou MapReduce '12 Proceedings of third international workshop on MapReduce and its Applications Date, 2012 frames are not supported

  416. Rajarshi Guha, Gary D. Wiggins, David J. Wild, Mu-Hyun Baik, Marlon E. Pierce, and Geoffrey C. Fox Improving usability and accessibility of cheminformatics tools for chemists through cyberinfrastructure and education Technical Report April 18 2007 published in In Silico Biology 11 (2011/2012) 41-60 DOI

  417. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Iterative Statistical Kernels on Contemporary GPUs Technical report April 11 2012, International Journal of Computational Science and Engineering (IJCSE) to be published

  418. Feng Xie, Jiaxing Shang, Zhen Chen and Geoffrey C. Fox Grey Forecast Model for Accurate Recommendation to Cope with Data Sparsity and Correlation Technical report April 4 2012

  419. David J. Crandall, Geoffrey C. Fox, John D. Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models Technical Report April 8 2012 submitted for publication

  420. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox Towards Cloud Deployments using FutureGrid Technical Report April 2012

  421. Javier Diaz, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures Technical Report March 2012

  422. Gilles Fedak, Geoffrey Fox, Gabriel Antoniu, Haiwu He Future of MapReduce for scientific computing Proceedings of the second international workshop on MapReduce and its applications MapReduce '11 Pages 75-76 ACM New York, NY, USA 2011 DOI Future of MapReduce for scientific computing Gilles Fedak , Geoffrey Fox , Gabriel Antoniu , Haiwu He MapReduce '11 Proceedings of the second international workshop on MapReduce and its applications, 2011 frames are not supported

  423. Kate Keahey, Frederic Desprez, Frederic Desprez, Geoffrey Fox, Emmanuel Jeannot, Kate Keahey, Michael Kozuch, David Margery, Pierre Neyron, Lucas Nussbaum, Christian Perez, Olivier Richard, Warren Smith, Jens Vöckler, Gregor von Laszewski Supporting Experimental Computer Science Technical Report March 9 2012 summarizing Support for Experimental Computer Science Workshop at SC11 Seattle November 18 2011

  424. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality and Fairness in MapReduce Technical Report March 4 2012 accepted at The Third International Workshop on MapReduce and its Applications (MAPREDUCE'12) of ACM HPDC 2012 conference at Delft the Netherlands

  425. Geoffrey Fox and Dennis Gannon Programming Paradigms for Technical Computing on Clouds and Supercomputers presented at Cloud Futures 2012: Hot Topics in Research and Education, Berkeley CA May 7-8 2012

  426. Judy Qiu and Thilina Gunarathne Twister4Azure: Parallel Data Analytics on Azure Technical Report February 29 2012

  427. Yang Ruan, Zhenhua Guo, Yuduo Zhou, Judy Qiu, Geoffrey Fox HyMR: a Hybrid MapReduce Workflow System Technical Report February 28 2012

  428. Gregor von Laszewski MapReduce for Scientist using FutureGrid Technical Report February 28 2012

  429. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox, and Adam Hughes Visualizing the Protein Sequence Universe Technical Report February 24 2012

  430. Kangseok Kim, Marlon Pierce, Geoffrey Fox Performance of scalable, distributed database system built on multicore systems with deterministic annealing clustering Technical Report February 18 2012

  431. Zhenhua Guo, Geoffrey Fox, and Mo Zhou Improving Resource Utilization in MapReduce Technical Report February 18 2012

  432. Geoffrey C. Fox, Supun Kamburugamuve, Ryan Hartman Architecture and Measured Characteristics of a Cloud Based Internet of Things API Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications (IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems (CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA, Technical Report February 14 2012

  433. Tao Huang, Geoffrey Fox Collaborative Annotation of Real Time Streams on Android-Enabled Devices Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications (IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems (CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA, Technical Report February 14 2012

  434. Ahmet Fatih Mustacoglu, Geoffrey C. Fox A Novel Digital Information Service for Federating Distributed Digital Entities Technical Report February 12 2012

  435. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Scalable Parallel Scientific Computing Using Twister4Azure Technical Report February 11 2012

  436. Seung-Hee Bae, Judy Qiu, Geoffrey Fox Adaptive Interpolation of Multidimensional Scaling International Conference on Computational Science ICCS Omaha Nebraska June 4-6 2012

  437. Zhenhua Guo, Geoffrey Fox Improving MapReduce Performance in Heterogeneous Network Environments and Resource Utilization Technical Report January 29 2012

  438. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Iterative Statistical Kernels on Contemporary GPUs Technical Report January 26 2012

  439. Sidd Maini, Thomas Wiggins, Eric Tsao, Justin Barnet, Geoffrey Fox Building a Culturally Sensitive portal for Indigenous Nations Technical Report January 21 2012

  440. Donnellan, Andrea; Parker, Jay W.; De Jong, Eric; Pierce, Marlon; Fox, Geoffrey; McLeod, Dennis; Rundle, John B.; Grant, Lisa A Distributed Approach to Computational Earthquake Science: Opportunities and Challenges Technical Report January 19 2012

  441. Andrea Donnellan, Geoffrey Fox, Dennis McLeod, Marlon Pierce, and John Rundle OpenQuake Social Networking for EarthCube Letter of Intent for NSF Earthcube activity January 18 2012

  442. Andrea Donnellan, Jay Parker, Robert Granat, Eric De Jong, Shigeru Suzuki, Marlon Pierce and Geoffrey Fox, John Rundle, Dennis McLeod, and Rami Al-Ghanmi, Lisa Grant Ludwig QuakeSim: Integrated Modeling and Analysis of Geologic and Remotely Sensed Data to be presented at 2012 IEEE Aerospace Conference , March 3–10, 2012 Big Sky, Montana with Final Version and DOI

  443. Geoffrey Fox and Dennis Gannon Cloud Programming Paradigms for Technical Computing Applications Technical Report January 17 2012

  444. Jun Wang, Marlon E. Pierce, Yu Ma, Geoffrey C. Fox, Andrea Donnellan, Jay W. Parker, Margaret Glasscoe Using Service-Based Geographical Information System to Support Earthquake Research and Disaster Response Technical Report January 15 2012

  445. Yunhee Kang and Geoffrey Fox Performance Analysis of Twister based MapReduce Applications on Virtualization System in FutureGrid Advanced Science Letters to appear 2012

  446. Jai-Hoon Kim and Geoffrey Fox Real-Time Scheduling in Cyber-Physical Systems Technical Report January 3 2012 for (aborted) Special Issue for 2012 International Conference on Computer and Applications March 30-31, 2012 at Olympic Parktel, Seoul, Korea

  447. Jai-Hoon Kim, Sanghyuk Park, Geoffrey Fox Real-Time Scheduling in Cyber-Physical Systems Abstract Accepted in 2012 International Conference on Computer and Applications March 30-31, 2012 at Olympic Parktel, Seoul, Korea

  448. Jai-Hoon Kim, Kangseok Kim and Geoffrey Fox Analysis for Optimal Degree of Replication updated from Old Version Technical Report January 3 2012 Information Science and Technology Conference IST2012 Shanghai China April 28-30 2012

  449. Thilina Gunarathne, Xiaoming Gao and Judy Qiu Twister4Azure: Data Analytics in the Cloud Technical Report December 30 2011

  450. Lizhe Wang, Gregor von Laszewski, Fang Huang, Jai Dayal, Tom Furlani, Geoffrey Fox Task scheduling with ANN-based temperature prediction in a data center: a simulation-based study Engineering with Computers (2011) 27:381–391 DOI 10.1007/s00366-011-0211-4

  451. Alex Ramirez and Geoffrey Fox, A REPORT OF THE NATIONAL SCIENCE FOUNDATION ADVISORY COMMITTEE FOR CYBERINFRASTRUCTURE: TASK FORCE ON CYBERLEARNING AND WORKFORCE DEVELOPMENT or local version March, 2011.

  452. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP (Revised) Technical report December 14 2011

  453. Geoffrey Fox Deterministic Annealing and Robust Scalable Data mining for the Data Deluge Invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011 Deterministic annealing and robust scalable data mining for the data deluge Geoffrey C. Fox PDAC '11 Proceedings of the 2nd international workshop on Petascal data analytics: challenges and opportunities, 2011 frames are not supported

  454. Judy Qiu Generalizing MapReduce as a Unified Cloud and HPC Runtime invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011

  455. Geoffrey Fox Data Intensive Applications on Clouds Keynote at The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011 Data intensive applications on clouds Geoffrey C. Fox DataCloud-SC '11 Proceedings of the second international workshop on Data intensive computing in the clouds, 2011 frames are not supported

  456. Zhenhua Guo, Geoffrey Fox, Mo Zhou, Investigation of Data Locality in MapReduce CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada, Technical Report November 27 2011

  457. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP Technical report November 15 2011

  458. Geoffrey Fox (Indiana University, USA), Tony Hey (Microsoft Research, USA) and Anne Trefethen (Oxford University, UK) Where does all the data come from? Technical report November 9 2011

  459. Adam Hughes, Yang Ruan, Saliya Ekanayake, Seung-Hee Bae, Qunfeng Dong, Mina Rho, Judy Qiu, Geoffrey Fox Interpolative Multidimensional Scaling Techniques for the Identification of Clusters in Very Large Sequence Sets Special Issue of BMC Bioinformatics for Proceedings of GLBIO Great Lakes Bioinformatics Conference Ohio University Athens Ohio May 2-4 2011 BMC Bioinformatics 2012, 13(Suppl 2):S9 DOI: 10.1186/1471-2105-13-S2-S9

  460. Yunhee Kang, Geoffrey C. Fox, Performance Evaluation of MapReduce applications on Cloud Computing Environment, FutureGrid GDC2011, 2011 Conference on Grid and Distributed Computing December 8 ~ 10, 2011 in Jeju Grand Hotel, Jeju Island, Korea .

  461. Jay W Parker, Andrea Donnellan, Robert A Granat, Gregory A Lyzenga, Margaret T Glasscoe, Dennis McLeod, Rami Al-Ghanmi, Marlon Pierce, Geoffrey Fox, Lisa Grant Ludwig, John Belting Rundle QuakeSim: a Web Service Environment for Productive Investigations with Earth Surface Sensor Data Fall AGU Meeting San Francisco CA December 5-9 2011

  462. Margaret Glasscoe, Ronald Blom, Gerald Bawden, Geoffrey Fox, Marlon Pierce, John Rundle, Jun Wang, Robert Granat, Michael Burl, Yu Ma, Mark Yoder, Michael Sachs, Eric Fielding, Jay Parker, Charles Norton, Greg Lyzenga, Roland Bürgmann E-DECIDER: Earthquake Disaster Decision Support and Response Tools . Development and Experiences Fall AGU Meeting San Francisco CA December 5-9 2011

  463. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Portable Parallel Programming on Cloud and HPC: Scientific Applications of Twister4Azure Technical Report August 4 2011 to appear in proceedings of 4th IEEE/ACM International Conference on Utility and Cloud Computing ( UCC 2011) December 5-7 Melbourne Australia

  464. Javier Diaz, Gregor von Laszewski, Fugang Wang, Andrew J. Younge and Geoffrey Fox FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images 3rd IEEE International Conference CloudCom on Cloud Computing Technology and Science, Athens Greece, November 29 - December 1 2011 with longer version

  465. Beth Plale, Geoffrey Fox, Stacy Kowalczyk, Kavitha Chandrasekar eScience Workflows 9 years Out: Converging on a Vision Technical report November 19 2011

  466. Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew and Sun Kim BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis BIBM 2011, IEEE International Conference on Bioinformatics and Biomedicine 12-15 Nov 2011 , Atlanta, GA

  467. Xiaoming Gao, Vaibhav Nachankar, Judy Qiu Experimenting with Lucene Index on HBase in an HPC Environment HPCDB 2011, the 1st Workshop on High-Performance Computing meets Databases at SC11 November 14 2011

  468. Jong Youl Choi (adviser Geoffrey Fox) Large-scale data visualization for data-intensive and high-dimensional scientific data analysis Doctoral Show case at SC11 Seattle November 15 2011

  469. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu, Geoffrey Fox Design Patterns for Scientific Applications in DryadLINQ CTP The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011 Design patterns for scientific applications in DryadLINQ CTP Hui Li , Yang Ruan , Yuduo Zhou , Judy Qiu , Geoffrey Fox DataCloud-SC '11 Proceedings of the second international workshop on Data intensive computing in the clouds, 2011 frames are not supported

  470. Thilina Gunarathne (adviser Geoffrey Fox) Architectures for Iterative Data Intensive Analysis Computations on Clouds and Heterogeneous Environments Doctoral Show case at SC11 Seattle November 15 2011

  471. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION: Performance of Key Features and Interfaces in DryadLINQ CTP Technical report November 15 2011

  472. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality in MapReduce Proceedings of CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada, Technical report November 8 2011

  473. Andrea Donnellan, Jay Parker, Geoffrey Fox, Marlon Pierce, Dennis McLeod, John Rundle, Lisa Grant Ludwig, Charles Meertens EarthCube and Earthquake Science submitted to NSF Earthcube activity November 2 2011

  474. Thilina Gunarathne, Bimalee Salpitikorala, Arun Chauhan, Geoffrey Fox Optimizing OpenCL Kernels for Iterative Statistical Applications on GPUs 2nd International Workshop on GPUs and Scientific Applications (GPUScA 2011), Galveston Island, Texas, USA, October 10, 2011, in conjunction with PACT 2011

  475. Andrea Donnellan, Jay Parker, Scott Hensley, Bruce Bills, Brian Hawkins, Paul Rosen, Yang Zheng, Yunling Lou, John Rundle, Tom Herring, Lisa Grant Ludwig, Marlon Pierce and Geoffrey Fox, Yu Ma, Jun Wang, Dennis McLeod, and Rami Al-Ghanmi, Alessandro Grippo Conjugate Faulting, Stepover, and Inflation Associated 1 with the 2010 Magnitude 7.2 El Mayor-Cucapah Earthquake Observed in UAVSAR and GPS Measurements Submitted to AGU Geochemisty, Geophysics, Geosystems, October 10, 2011

  476. Judy Qiu Editorial for Emerging Computational Methods for the Life Sciences Workshop Special Issue " li-bullet-0"> Geoffrey Fox Editorial for Advanced Theory and Practice for High Performance Computing and Communications Special Issue of Concurrency " li-bullet-0"> Seung-Hee Bae, Judy Qiu, Geoffrey Fox Scalable Dimension Reduction for Large Abstract Data Visualization Poster at IEEE Cluster 2011 at the Hilton Hotel in Austin, TX, and hosted by the Texas Advanced Computing Center September 26-30 2011

  477. Aziz Murtazaev, M.S.; Geoffrey C Fox, Ph.D.; Sangyoon Oh, Ph.D. SciPDFindexer: Distributed Information Retrieval system using MapReduce Technical Report August 18 2011

  478. Alex Ramírez, Geoffrey C. Fox, (task force co-chairs) and Geoffrey Fox (Cyberinfrastructure Workforce Development and Higher Education: Computational and Data-Intensive Science and Engineering working group chair) A REPORT OF THE NATIONAL SCIENCE FOUNDATION ADVISORY COMMITTEE FOR CYBERINFRASTRUCTURE TASK FORCE ON CYBERLEARNING AND WORKFORCE DEVELOPMENT Final Report March 2011

  479. Hui Li, Ruan Yang, Yuduo Zhou, Judy Qiu DRYADLINQ CTP EVALUATION Draft Technical Report July 31 2011

  480. Beth Plale, Geoffrey Fox, Stacy Kowalczyk, Kavitha Chandrasekar, Bina Bhashar State of Workflow Systems for eScience Draft Technical Report June 28 2011

  481. FutureGrid from User’s Perspective, Geoffrey Fox; How to Access FutureGrid, Gregor von Laszewski; HPC on FutureGrid, Warren Smith; Cloud Computing on FutureGrid, Kate Keahey; Training, Education and Outreach, Renato Figueiredo; Experimental Framework Support, Warren Smith; contained in FutureGrid: What an Experimental Infrastructure Can Do for You FutureGrid Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 20 2011

  482. Geoffrey Fox MapReduce TG11 BOF MapReduce Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  483. Renato Figueiredo Panoat Chuchaisri, David Wolinsky Educational Virtual Clusters for Ondemand MPI/Hadoop/Condor in FutureGrid presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  484. Javier Diaz, Gregor Von Laszewski, Fugang Wang, Geoffrey C Fox Towards Generic FutureGrid Image Management presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011 Towards generic FutureGrid image management Gregor von Laszewski , Javier Diaz , Fugang Wang , Andrew J. Younge , Archit Kulshrestha , Geoffrey Fox TG '11 Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, 2011 frames are not supported

  485. John Bresnahan, Tim Freeman, David Labissoniere, Kate Keahey Managing Appliance Launches in Infrastructure Clouds presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011

  486. Geoffrey Fox, Gregor von Laszewski, Andrew Grimshaw, Renato Figueiredo, Kate Keahey, Gregory G. Pike, Andrew Younge, FutureGrid Tutorial presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011

  487. Geoffrey Fox, Gregor von Laszewski, Renato Figueiredo FutureGrid Tutorial presented at OGF32 Marriott Salt Lake City July 17 2011

  488. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu Design Patterns for Typical Scientific Applications in DryadLINQ CTP Technical Report July 2 2011

  489. Andrew J. Younge, Robert Henschel, James T. Brown, Gregor von Laszewski, Judy Qiu, Geoffrey C. Fox Analysis of Virtualization Technologies for High Performance Computing Environments Technical report February 15 2011 in Proceedings of The Fourth IEEE International Conference on Cloud Computing (CLOUD 2011) July 4-9, 2011, Washington Marriott, Washington DC, USA updated April 2011 DOI

  490. Judy Qiu, Thilina Gunarathne, Geoffrey Fox Classical and Iterative MapReduce on Azure Abstract to be presented at Cloud Futures 2011 workshop Microsoft Conference Center Building 33 Redmond, Washington United States, June 2–3, 2011

  491. Geoffrey Fox, Alex Ho, and Eddy Chan, Measured Characteristics of FutureGrid Clouds for Scalable Collaborative Sensor-Centric Grid Applications IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.

  492. Apu Kapadia, Steven Myers, XiaoFeng Wang and Geoffrey Fox Toward Securing Sensor Clouds IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.

  493. Yuan Luo, Zhenhua Guo, Yiming Sun, Beth Plale, Judy Qiu, Wilfred Li A Hierarchical Framework for Cross-Domain MapReduce Execution Proceedings of Emerging Computational Methods for the Life Sciences Workshop ECMLS2011 of ACM HPDC 2011 conference

  494. Zhenhua Guo, Marlon Pierce, Geoffrey Fox, Mo Zhou Automatic Task Re-organization in MapReduce Technical report May 10 2011 Proceedings of IEEE Cluster 2011 at the Hilton Hotel in Austin, TX, and hosted by the Texas Advanced Computing Center September 26-30 2011

  495. Javier Diaz, Gregor von Laszewski, Fugang Wang, Andrew J. Younge and Geoffrey Fox FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images Technical report May 10 2011 submitted for publication

  496. A. J. Younge, V. Periasamy, M. Al-Azdee, W. Hazlewood, and K. Connelly, ScaleMirror: A Pervasive Device to Aid Weight Analysis in Proceedings as Extended Abstract of the 29th International Conference on Human Factors in Computing Systems ( CHI2011). Vancouver, BC: ACM, May 2011

  497. Marlon Pierce, Andrea Donnellan, Margaret Glasscoe, Xiaoming Gao, Jun Wang, Yu Ma QuakeSim and E-Decider Web Development Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  498. Geoffrey Fox, Marlon Pierce, Andrea Donnellan, John Rundle Towards the OpenQuake Infomall Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  499. Margaret Glasscoe, Ronald Blom, Gerald Bawden, Geoffrey Fox, Marlon Pierce, John Rundle, Jun Wang, Robert Granat, Michael Burl, Yu Ma, Mark Yoder, Michael Sachs, Eric Fielding, Jay Parker, Charles Norton, Greg Lyzenga, Roland Bürgmann E-­DECIDER: Experiences Developing Earthquake Disaster Decision Support and Response Tools Abstract for APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011

  500. Gregor von Laszewski, Lizhe Wang, Fugang Wang, Geoffrey C. Fox, G. Kumar Mahinthakumar Threat Detection in an Urban Water Distribution Systems with Simulations Conducted in Grids and Clouds The Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, Ajaccio, Corsica, France, 12-15 April 2011

  501. Thilina Gunarathne, Judy Qiu, Geoffrey Fox Iterative MapReduce for Azure Cloud in Proceedings of CCA11 Cloud Computing and Its Applications April 12-13, 2011

  502. J. Diaz, A. J. Younge, G. von Laszewski, F. Wang, and G. C. Fox, Grappling cloud infrastructure services with a generic image repository in Proceedings of CCA11 Cloud Computing and Its Applications April 12-13, 2011

  503. Judy Qiu and Seung-Hee Bae Performance of Windows Multicore Systems on Threading and MPI Technical Report November 26 2010 to be published in Special Issue for FGMMS Frontiers of GPU, Multi- and Many-Core Systems 2010 of Concurrency and Computation: Practice and Experience, Updated March 2011

  504. Thilina Gunarathne, Tak-Lon Wu, Jong Youl Choi, Seung-Hee Bae, Judy Qiu Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications Technical report October 20 2010 to be published in special issue for ECMLS 2010 of Concurrency and Computation: Practice and Experience Updated April 2011

  505. Jong Youl Choi, Seung-Hee Bae, Judy Qiu, Bin Chen, David Wild Browsing Large Scale Cheminformatics Data with Dimension Reduction Technical Report October 16 2010 to be published in special issue for ECMLS 2010 of Concurrency and Computation: Practice and Experience Updated April 2011

  506. Beytullah Yildiz, Geoffrey C. Fox Toward a Modular and Efficient Distribution for Web Service Handlers March 17 2011 To be published in Concurrency and Computation: Practice and Experience

  507. Judy Qiu and Seung-Hee Bae, Performance of Windows Multicore Systems on Threading and MPI to be published in Concurrency and Computation: Practice and Experience Special Issue edited by Shujia Zhou for Frontiers of GPU, Multi- and Many-Core Systems Workshop in The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2010), May 18 2010, Melbourne, Australia

  508. Andrea Donnellan, Jay Parker, Robert Granat, Greg Lyzenga, John Rundle, Dennis McLeod, Rami Al-Ghanmi, Geoffrey Fox, Marlon Pierce QuakeSim Computational Environment Abstract for 2011 Earth Science Technology Forum ESTF2011 June 21-23 in Pasadena, CA.

  509. Geoffrey Fox Computational Sciences and Parallelism in Encyclopedia on Parallel Computing (where title Computational Sciences) edited by David Padua and published by Springer December 28 2010 DOI

  510. Andrew J. Younge, Gregor von Laszewski, Lizhe Wang, and Geoffrey C. Fox Providing a Green Framework for Cloud Data Centers Book Chapter in Handbook on Energy-Aware and Green Computing Ahmad, I. and; Ranka, S. (ed.). Chapman and Hall/CRC Press 2011

  511. Gregor von Laszewski, Geoffrey C. Fox, Fugang Wang, Andrew Younge, Archit Kulshrestha, Warren Smith, Jens Vockler, Renato J. Figueiredo, Jose Fortes, Kate Keahey Design of the FutureGrid Experiment Management Framework GCE Workshop at SC10 November 14 2010 DOI

  512. Sangyoon Oh, Mehmet Aktas and Geoffrey C. Fox Mobile Web Service Architecture Using Context-store KSII TRANSACTIONS ON INTERNET AND INFORMATION SYSTEMS VOL. 4, NO. 5, October 2010 DOI

  513. Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox Multidimensional Scaling by Deterministic Annealing with Iterative Majorization algorithm Proceedings of IEEE eScience 2010 Conference , Brisbane, Australia 7 - 10 December 2010

  514. Andrew J. Younge, James T. Brown, Robert Henschel, Judy Qiu, Geoffrey C. Fox Performance Analysis of HPC Virtualization Technologies within FutureGrid Poster at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  515. Bingjing Zhang, Yang Ruan, Tak-Lon Wu, Judy Qiu, Adam Hughes, Geoffrey Fox Applying Twister to Scientific Applications Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  516. Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, Geoffrey Fox MapReduce in the Clouds for Science Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  517. Xiaoming Gao, Yu Ma, Marlon Pierce, Mike Lowe, Geoffrey Fox Building a Distributed Block Storage System for Cloud Infrastructure Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  518. Chris Hemmerich, Adam Hughes, Yang Ruan, Aaron Buechlein, Judy Qiu, and Geoffrey Fox Map-Reduce Expansion of the ISGA Genomic Analysis Web Server Demonstration at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  519. Judy Qiu, Adam Lee Hughes, Saliya Ekanayake, Thilina Gunarathne, Stephen Tak-lon Wu, Hui Li, Jong Youl Choi, Seung-Hee Bae, Yang Ruan Parallel Applications And Tools For Cloud Computing Environments Demonstration at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010

  520. Tyler Pace, Shaowen Bardzell and Geoffrey Fox Practice-Centered e-Science: A Practice Turn Perspective on Cyberinfrastructure Design Group 10 Conference, Sanibel Island Florida, November 7-10 2010 Practice-centered e-science: a practice turn perspective on cyberinfrastructure design Tyler Pace , Shaowen Bardzell , Geoffrey Fox GROUP '10 Proceedings of the 16th ACM international conference on Supporting group work, 2010

  521. Craig A. Stewart, Stephen Simms, Beth Plale, Matthew Link, David Y. Hancock, Geoffrey C. Fox What is Cyberinfrastructure? Association for Computing Machinery (ACM) Special Interest Group on University and College Computing Services (SIGUCCS) 2010 Fall Conference , Norfolk Waterside Marriot, October 24 - 27, 2010 Updated What is cyberinfrastructure Craig A. Stewart , Stephen Simms , Beth Plale , Matthew Link , David Y. Hancock , Geoffrey C. Fox SIGUCCS '10 Proceedings of the 38th annual fall conference on SIGUCCS, 2010 frames are not supported

  522. Johan Bollen, Geoffrey Fox, and Prashant Raj Singhal How and where the TeraGrid supercomputing infrastructure benefits science Journal of Informetrics published online October 23 2010 DOI

  523. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Tak-Lon Wu, Yang Ryan, Saliya Ekanayake, Adam Hughes, Geoffrey Fox Hybrid cloud and cluster computing paradigms for life science applications Proceedings of BOSC 2010 to be published in in BMC Bioinformatics October 6 2010

  524. Geoffrey Fox Cloud Architecture for Earthquake Science Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  525. Donnellan, A., Parker, J., Granat, R., Lyzenga, G., Glasscoe, M., Rundle, J., McLeod, D., Al-Ghanmi, R., Pierce, M., Fox, G. and Ludwig, L. G. QuakeSim Earthquake Modeling, Forecasting, and Data Access Tools Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  526. Gao, X., Granat, R., Pierce, M. and Wang, J. Building Services and Web Portal for GPS Time Series Data Analysis Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  527. Pierce, M, Fox, G, Gao, X, Ji, J, Ma, Y, Wang, J, Donnellan, A, Parker, J, Glasscoe, M, Granat, R, Al-Ghanmi, R and McLeod, D QuakeSim Science Gateway Updates Abstract for 7th ACES International Workshop OTARU, October 3-8, 2010

  528. Judy Qiu Scalable Programming and Algorithms for Data Intensive Life Science Applications Data-Intensive Sciences Workshop NSF September 19-20, 2010 in Seattle

  529. Adam Hughes, Saliya Ekanayake, Judy Qiu, and Geoffrey Fox Service-Oriented Architecture for Biosequence Analysis Workflow Technical Report September 7 2010

  530. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu Cloud Technologies for Bioinformatics Applications August 19 2010 (report), IEEE Transactions on Parallel and Distributed Computing 2011. 22(6): p. 998-1011. DOI

  531. Geoffrey Fox Editorial for Economic Models and Algorithms for Grid Systems Concurrency and Computation: Practice and Experience Special Issue: Economic Models and Algorithms for Grid Systems Volume 22, Issue 14, page 1971, 25 September 2010 DOI

  532. Geoffrey Fox Programming Paradigms White Paper for Data Intensive Research Workshop at NESC Edinburgh March 17 2010

  533. Andrew J. Younge, Gregor von Laszewski, Lizhe Wang, Sonia Lopez-Alarcon, and Warren Carithers. Efficient Resource Management for Cloud Computing Environments . Work in Progress in Green Computing with the IEEE International Green Computing Conference (IGCC), Chicago, IL USA, Aug 15-18, 2010.

  534. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. Provide Virtual Machine Information for Grid Computing, IEEE Trans. on SMC (TSMC), 2010.

  535. Tobias Kurze, Lizhe Wang, Gregor von Laszewski, Jie Tao, Marcel Kunze. Cyberaide onServe: Software as a Service on Production Grids. Proceedings of the 39th International Conference on Parallel Processing (ICPP'10), San Diego, CA, USA, Sep 13-16, 2010.

  536. Beytullah YILDIZ and Geoffrey Fox Measuring Overhead for Distributed Web Service Handler Proceedings of 3rd IEEE International Conference on Computer Science and Information Technology (ICCSIT 2010) 9-11 July 2010 pages 566 - 570 DOI

  537. Marlon E. Pierce, Geoffrey C. Fox, Yu Ma, Jun Wang Cloud Computing and Spatial Cyberinfrastructure Technical Report July 10 2010 updated here on December 1 2010

  538. Andrea Donnellan, Marlon Pierce, Dennis McLeod, Jay Parker, John Rundle, Lisa Grant, Rami Al-Ghanmi, Gepffrey Fox, Robert Granat Integrating GPS, InSAR, and UAVSAR date into the QuakeSim Computational Environment 2011 IEEE Aerospace Conference March 5-12, 2011, Big Sky, Montana

  539. Hui Li Topics on MapReduce Technical report June 27 2010

  540. Geoffrey Fox FutureGrid Platform FGPlatform: Rationale and Possible Directions White Paper June 8 2010

  541. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez A Model for LACCEI: Minority Serving Institutions and CyberInfrastructure Research/ Education Minority Serving Institutions-CyberInfrastructure Empowerment Coalition- MSI-CIEC Proceedings of The Eighth LACCEI Annual Conference for Engineering and Technology Innovation and Development for the Americas Arequipa, Peru on June 1-4 2010.

  542. Judy Qiu, Thilina Gunarathne, Jaliya Ekanayake, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Yang Ryan, Saliya Ekanayake, Tak-Lon Wu, Scott Beason, Adam Hughes, Geoffrey Fox Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications Technical Report April 17 2010 submitted to the 11th Annual Bioinformatics Open Source Conference BOSC 2010

  543. Geoffrey Fox 22nd ACM Algorithms and Application for Grids and Clouds Keynote Talk at Symposium on Parallelism in Algorithms and Architectures Santorini, Greece June 13 - 15, 2010 Algorithms and application for grids and clouds Geoffrey C. Fox SPAA '10 Proceedings of the 22nd ACM symposium on Parallelism in algorithms and architectures, 2010 frames are not supported

  544. Johan Bollen, Geoffrey Fox, Prashant Raj Singhal How and where the TeraGrid supercomputing infrastructure benefits science Technical report May 24 2010

  545. Geoffrey Fox Hybrid Computational Infrastructure Supporting eResearch May 24 2010

  546. Karthik Narayan Muthuraman Using SWARM service for a GRID based Sequence Assembly Bioinformatics Masters Capstone May 23 2010

  547. Geoffrey Fox Polemic on Clouds and MapReduce for Scientific Applications April 27 2010

  548. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. Schedule Distributed Virtual Machines in a Service Oriented Environment In Proceedings of the 24th IEEE International Conference on Advanced Information Networking and Applications (AINA'10). Perth, Australia Apr. 20-23, 2010, Australia

  549. Seung-Hee Bae, Judy Qiu, and Geoffrey C. Fox Multidimensional Scaling by Deterministic Annealing with Iterative Majorization algorithm Technical Report March 31 2010

  550. Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, and Geoffrey Fox, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications March 21 2010. Proceedings of Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Cloud computing paradigms for pleasingly parallel biomedical applications Thilina Gunarathne , Tak-Lon Wu , Judy Qiu , Geoffrey Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  551. Jong Youl Choi, Seung-Hee Bae, Judy Qiu, Geoffrey Fox, Bin Chen, and David Wild, Browsing Large Scale Cheminformatics Data with Dimension Reduction March 21 2010. Proceedings of Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Browsing large scale cheminformatics data with dimension reduction Jong Youl Choi , Seung-Hee Bae , Judy Qiu , Geoffrey Fox , Bin Chen , David Wild HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  552. Jaliya Ekanayake, Hui Li, Bingjing Zhang, Thilina Gunarathne, Seung-Hee Bae, Judy Qiu, Geoffrey Fox Twister: A Runtime for Iterative MapReduce Proceedings of the First International Workshop on MapReduce and its Applications of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010. Twister: a runtime for iterative MapReduce Jaliya Ekanayake , Hui Li , Bingjing Zhang , Thilina Gunarathne , Seung-Hee Bae , Judy Qiu , Geoffrey Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  553. Rajarshi Guha, Kevin Gilbert, Geoffrey Fox, Marlon Pierce, David Wild, Huapeng Yuan Advances in Cheminformatics Methodologies and Infrastructure to Support the Data Mining of Large, Heterogeneous Chemical Datasets Current Computer-Aided Drug Design, 2010, 6, 50-67

  554. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez CyberInfrastructure Research/ Education Development at Minority Serving Institutions National Model Promoted/ Implemented by MSI-CIEC (Minority Serving Institutions-CyberInfrastructure Empowerment Coalition) Technical Report February 13 2010

  555. Beytullah Yildiz, Geoffrey C. Fox DISTRIBUTED HANDLER ARCHITECTURE Technical Report February 11 2010, 3rd IEEE International Conference on Computer Science and Information Technology (IEEE ICCSIT 2010) Chengdu, China during July 9 - 11, 2010

  556. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu, Geoffrey Fox, Scott Beason, Jong Youl Choi, Yang Ruan, Seung-Hee Bae, Hui Li Applicability of DryadLINQ to Scientific Applications Technical Report January 30 2010

  557. Seung-Hee Bae, Jong Youl Choi, Judy Qiu, Geoffrey Fox Dimension Reduction and Visualization of Large High-dimensional Data via Interpolation Proceedings of ACM HPDC 2010 conference, Chicago, Illinois, June 20-25, 2010 Dimension reduction and visualization of large high-dimensional data via interpolation Seung-Hee Bae , Jong Youl Choi , Judy Qiu , Geoffrey C. Fox HPDC '10 Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010 frames are not supported

  558. Apu Kapadia, Steven Myers, XiaoFeng Wang and Geoffrey Fox Secure Cloud Computing with Brokered Trusted Sensor Networks Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  559. Ahmet Fatih Mustacoglu and Geoffrey Fox Performance of a Collaborative Framework for Federating Distributed Digital Entities Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  560. Tyler Pace, Shaowen Bardzell, Geoffrey Fox Human-Centered e-Science: A Group-Theoretic Perspective on Cyberinfrastructure Design Proceedings of The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) May 17-21, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA

  561. Judy Qiu, Scott Beason, Seung-Hee Bae, Saliya Ekanayake, Geoffrey Fox Performance of Windows Multicore Systems on Threading and MPI to appear in the Proceeding Frontiers of GPU, Multi- and Many-Core Systems Workshop of 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Conference (CCGrid 2010). May 17-20, 2010. Melbourne, Victoria, Australia.

  562. Lizhe Wang, Gregor von Laszewski, Jai Dayal and Fugang Wang Towards Energy Aware Scheduling for Precedence Constrained Parallel Tasks in a Cluster with DVFS to appear in the Proceedings of the The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  563. Jong Youl Choi, Seung-Hee Bae, Xiaohong Qiu and Geoffrey Fox High Performance Dimension Reduction and Visualization for Large High-dimensional Data Analysis to appear in the Proceedings of the The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  564. Judy Qiu, Jong Youl Choi, Seung-Hee Bae, Thilina Gunarathne, Geoffrey Fox, Bin Cao, David Wild Browsing Large Scale Cheminformatics Data with Dimension Reduction Demonstration at 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia (submitted for publication November 14 2009)

  565. Jong Youl Choi, Judy Qiu, Marlon Pierce, Geoffrey Fox Generative Topographic Mapping by Deterministic Annealing to appear in the Proceedings of the 10th International conference on Computational Science and Engineering (ICCS 2010), May 31 - Jun 2, 2010. Amsterdam, The Netherlands.

  566. Richard A. Aló, Diane Baxter, Karl Barnes, Al Kuslikis ,Geoffrey Fox, Alex Ramirez "Advancing Computational Science, Visualization and Homeland Security Research/ Education at Minority Serving Institutions National Model Promoted/ Implemented by MSI-CIEC (Minority Serving Institutions-CyberInfrastructure Empowerment Coalition" to appear in the Proceedings of the 10th International conference on Computational Science and Engineering (ICCS 2010), May 31 - Jun 2, 2010. Amsterdam, The Netherlands DOI

  567. Jaliya Ekanayake, Xiaohong Qiu, Thilina Gunarathne, Scott Beason, Geoffrey Fox High Performance Parallel Computing with Clouds and Cloud Technologies to appear as a book chapter to Cloud Computing and Software Services: Theory and Techniques, CRC Press (Taylor and Francis), ISBN-10: 1439803153.

  568. Shrideep Pallickara, Jaliya Ekanayake, and Geoffrey Fox Granules: A Lightweight Runtime for Scalable Computing with Support for Map-Reduce to appear as a book chapter to Cloud Computing and Software Services: Theory and Techniques, CRC Press (Taylor and Francis), ISBN-10: 1439803153.

  569. Jaliya Ekanayake, Thilina Gunarathne, Judy Qiu, Cloud Technologies for Bioinformatics Applications submitted to the Journal of IEEE Transactions on Parallel and Distributed Systems. Special Issues of extended versions of selected paper from The 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers ( SC09). Portland, Oregon, November 16, 2009.

  570. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Yang Ruan, Saliya Ekanayake, Stephen Wu, Scott Beason, Geoffrey Fox, Mina Rho, Haixu Tang Data Intensive Computing for Bioinformatics Technical Report December 29 2009 Updated in Data Intensive Distributed Computing, Tevik Kosar, Editor. 2011, IGI Publishers.

  571. Jai Dayal, Casey Rathbone, Lizhe Wang, and Gregor von Laszewski. Towards On Demand IT Service Deployment In Computer Middleware: Theory, Types and Uses, Nova press, 2010.

  572. Lizhe Wang, Gregor von Laszewski, Marcel Kunze, Jie Tao, Jai Dayal. Provide Virtual Distributed Environments for Grid Computing on Demand Advances in Engineering Software. 41(2): 213-219, 2010

  573. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. "Virtual Data System on Distributed Virtual Machines in Computational Grids". Accepted by International Journal of Ad Hoc and Ubiquitous Computing (IJAHUC).

  574. Gregor von Laszewski, Jay Dayal, Lizhe Wang. "eMolst – a documentation flow for distributed health informatics", accepted by Concurrency and Computation: Practice and Experience, Wiley InterScience.

  575. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze Grid virtualization engine: design, implementation and evaluation IEEE Systems Journal, Vol 3, issue 4, Dec. 2009

  576. Lizhe Wang, Gregor von Laszewski, Marcel Kunze and Jie Tao. Cloud computing: a perspective study New Generation Computing, Vol 28, 137-146, 2010. Ohmsha, Ltd. and Springer

  577. Gregor von Laszewski and Lizhe Wang. GreenIT Service Level Agreements . In proceeding of Service Level Agreements in Grids Workshop, held in conjunction with The 10th IEEE International Conference on Grid Computing (Grid 2009) October 13, 2009 Banff, Canada.

  578. Tobias Kurze, Lizhe Wang, Gregor von Laszewski, Jie Tao, Marcel Kunze, and Fugang Wang, Jaliya Ekanayake. Cyberaide Virtual Applicance: On-demand Deploying Middleware for Cyberinfrastructure . First International Conference CloudComp on Cloud Computing October 19 - 21, 2009, Munich, Germany.

  579. Bruno Schulze and Geoffrey C Fox Advanced Scheduling Strategies and Grid Programming Environments Editorial of Special Issue for 6th International Workshop on Middleware for Grid Computing (MGC 2008) and 2nd Latin American Grid (LAGrid 2008) workshop, Concurrency"c0 c7 c3"> DOI

  580. Wang, L., G. von Laszewski, and J. Dayal "Thermal aware workload scheduling with backfilling for green data centers." 28th IEEE International Performance Computing and Communications Conference (IPCCC'09) December 12-14 2009 Phoenix, Arizona, USA

  581. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce A Federated Approach to Information Management in Grids Journal of Web Services Research, vol. 7, no. 1, pp. 65-98, 2010

  582. Jay W Parker, Margaret T Glasscoe, Andrea Donnellan, Robert A Granat, John Belting Rundle, Dennis McLeod, Rami Al-Ganmi, Lisa Grant Ludwig, Geoffrey Fox, Marlon Pierce, Walt Brooks QuakeSim: Increasing Utility of Spacebourne and Ground-based Earthquake Fault Data Earth and Space Science Informatics 2009 AGU Fall Meeting 14–18 December 2009 San Francisco, California, USA

  583. Jaliya Ekanayake, (Advisor Geoffrey Fox) Architecture and Performance of Runtime Environments for Data Intensive Scalable Computing Doctoral Showcase SC09 Portland Oregon November 18 2009

  584. Xiaohong Qiu, Jaliya Ekanayake, Thilina Gunarathne, Seung-Hee Bae, Jong Youl Choi, Scott Beason, Geoffrey Fox Using MapReduce Technologies in Bioinformatics and Medical Informatics in Using Clouds for Parallel Computations in Systems Biology workshop at SC09 Portland Oregon November 16 2009

  585. Thilina Gunarathne, Chathura Herath, Eran Chinthaka, Suresh Marru Experience with Adapting a WS-BPEL Runtime for eScience Workflows GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009

  586. Zhenhua Guo, Raminderjeet Singh, Marlon Pierce Building the PolarGrid Portal Using Web 2.0 and OpenSocial GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009

  587. Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thilina Gunarathne, Geoffrey Fox, Roger Barga, Dennis Gannon Cloud Technologies for Bioinformatics Applications 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers ( SC09), Portland, Oregon, November 16th, 2009 Cloud technologies for bioinformatics applications Xiaohong Qiu , Jaliya Ekanayake , Scott Beason , Thilina Gunarathne , Geoffrey Fox , Roger Barga , Dennis Gannon MTAGS '09 Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, 2009 frames are not supported

  588. Sangyoon Oh, Mehmet Aktas, Geoffrey Fox Efficiency Benefits in Mobile Web Service Architecture Using Context-store Technical Report October 6 2009

  589. Lizhe Wang and Gregor von Laszewski and Jai Dayal and Xi He and Andrew J. Younge and Thomas R. Furlani Towards Thermal Aware Workload Scheduling in a Data Center Proceedings of the 10th International Symposium on Pervasive Systems, Algorithms and Networks (ISPAN2009) 14-16 December 2009 Kao-Hsiung, Taiwan

  590. Casey Rathbone and Lizhe Wang and Gregor von Laszewski and Fugang Wang Cyberaide Creative: On-Demand Cyberinfrastructure Provision in Clouds International Workshop on Grid Computing, Applications, and Technologies (GridCAT 2009) in conjunction with the 10th International Symposium on Pervasive Systems, Algorithms and Networks (I-SPAN 2009) 14-16 December 2009 Kao-Hsiung, Taiwan

  591. Gregor von Laszewski and Lizhe Wang and Andrew J. Younge and Xi He Power-Aware Scheduling of Virtual Machines in DVFS-enabled Clusters IEEE Cluster Conference 2009 New Orleans 31 Aug. - Sep. 4 2009

  592. Geoffrey Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu Biomedical Case Studies in Data Intensive Computing Keynote talk at The 1st International Conference on Cloud Computing (CloudCom 2009) at Beijing Jiaotong University, China December 1-4, 2009, Springer Verlag LNC 5931 "Cloud Computing" Martin Jaatun, Gansen Zhao, Chunming Rong (Eds), pp 2-18 (2009)

  593. Marlon E. Pierce, Geoffrey C. Fox, Yu Ma, Jun Wang, Whither Spatial Cyberinfrastructure? Technical Report August 31 2009

  594. Jong Youl Choi Deterministic Annealing for Generative Topographic Mapping GTM Technical report September 2 2009

  595. Xiaoming Gao, Mike Lowe, Yu Ma, Marlon Pierce Supporting Cloud Computing with the Virtual Block Store System Cloud Workshop at 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  596. Xiaoming Gao, Mike Lowe, Yu Ma, Marlon Pierce Supporting Cloud Computing with the Virtual Block Store System 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  597. Xiaohong Qiu, Jaliya Ekanayake, Geoffrey Fox, Thilina Gunarathne, Scott Beason Computational Methods for Large Scale DNA Data Analysis Microsoft eScience workshop , October 16 2009, Gates Center Carnegie Mellon University Pittsburgh

  598. Jaliya Ekanayake, Atilla Soner Balkir, Thilina Gunarathne, Geoffrey Fox, Christophe Poulain, Nelson Araujo, Roger Barga DryadLINQ for Scientific Analyses 5th IEEE International Conference on e-Science Oxford UK, December 9-11 2009

  599. Geoffrey Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu Case Studies in Data Intensive Computing: Large Scale DNA Sequence Analysis as the Million Sequence Challenge and Biomedical Computing Technical Report 9 August 2009

  600. Andrea Donnellan, Jay Parker, Charles Norton, Margaret Glasscoe, Robert Granat, John Rundle, Geoffrey Fox, Marlon Pierce3, Lisa Grant, Dennis McLeod, and Rami Al-Ghanmi QuakeSim Earthquake Modeling and Assimilation Environment Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS209 August 11-15 2009

  601. Marlon Pierce and Geoffrey Fox QuakeSim Web Computing Infrastructure Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS2009 August 11-15 2009

  602. Geoffrey Fox and Marlon PIerce Web 2.0, Cloud Computing, and Earthquake Forecasting Abstract for Asia Oceania Geosciences Society Meeting in Singapore AOGS2009 August 11-15 2009

  603. Eran Chinthaka, Jaliya Ekanayake, David Leake, and Beth Plale, CBR Based Workflow Composition Assistant, Accepted for publication, IEEE 2009 Third International Workshop on Scientific Workflows (SWF 2009) In conjunction with 7th IEEE International Conference on Web Services (ICWS 2009) July 10, 2009, Los Angeles, CA, USA

  604. Geoffrey Fox, Seung-Hee Bae, Jaliya Ekanayake, Xiaohong Qiu, and Huapeng Yuan Parallel Data Mining from Multicore to Cloudy Grids Proceedings of HPC 2008 High Performance Computing and Grids workshop Cetraro Italy July 3 2008

  605. Jaliya Ekanayake, Geoffrey Fox High Performance Parallel Computing with Clouds and Cloud Technologies First International Conference CloudComp on Cloud Computing October 19 - 21, 2009, Munich, Germany

  606. Xiaoming Gao, Mike Lowe, Marlon Pierce, Virtual Block Store Abstract at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  607. Marlon Pierce, Suresh Marru, Gregor von Laszewski, Wenjun Wu Building Science Gateways Tutorial at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  608. Marlon Pierce, Suresh Marru, Wenjun Wu, Gopi Kandaswami, Gregor von Laszewski, Rion Dooley, Maytal Dahan, Nancy Wilkins-Diehr, Mary Thomas Open Grid Computing Environments Paper at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  609. Richard Alo, Karl Barnes , Diane Baxter, Julie Foertsch , Geoffrey Fox, Al Kuslikis, Alex Ramirez CyberInfrastructure (CI) Days at Minority-Serving Intuitions (MSIs): A MSI-CIEC Update in a Changing Climate Poster at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009

  610. Siddharth Maini, Joshua Rosen, Marlon E. Pierce, Geoffrey C. Fox AVATS: Audio-Video and Textual Synchronization Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  611. Geoffrey Fox, Alex Ho, Eddy Chan, William Wang Measured Characteristics of Distributed Cloud Computing Infrastructure for Message-based Collaboration Applications Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  612. Tao Huang, Shrideep Pallickara, Geoffrey Fox A Distributed Framework for Collaborative Annotation of Streams Proceeedings of The 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA

  613. Sangmi Lee Pallickara, Marlon Pierce, Qunfeng Dong, and ChinHua Kong, Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters PPAM 2009 EIGHTH INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING AND APPLIED MATHEMATICS Wroclaw, Poland, September 13-16, 2009

  614. Robert Granat, Xiaoming Gao and Marlon Pierce The QuakeSim Web Portal Environment for GPS Data Analysis , Workshop on Sensor Networks for Earth and Space Science Applications, SAn Francisco April 16 2009

  615. Jun Ji Asynchronous FMGProcess Web services Technical Report April 12 2009

  616. Marlon E. Pierce, Xiaoming Gao, Sangmi L. Pallickara, Zhenhua Guo, Geoffrey C. Fox The QuakeSim Portal and Services: New Approaches to Science Gateway Development Techniques Submitted to Concurrency and Computation:Practice and Experience Special Issue on Computation and Informatics in Earthquake Science: The ACES Perspective 6th ACES International workshop Cairns, Australia 11 - 16 May 2008

  617. Geoffrey Fox Summary of Cloud Systems Birds of a Feather session at OGF22 Hyatt Regency Cambridge MA February 27 2008

  618. Kangseok KIm and Geoffrey Fox XGSP-RBAC: Access Control Mechanism based on RBAC Model in Ubiquitous Collaboration System Technical Report February 2 2009

  619. Kangseok KIm and Geoffrey Fox Modeling, Simulation, and Practice of Floor Control for Synchronous and Ubiquitous Collaboration (Technical Report February 2 2009) Multimedia Tools and Applications Journal DOI

  620. Mehmet Aktas and Marlon Pierce High Performance Hybrid Information Service Architecture Technical Report January 24 2009, Concurrency and Computation: Practice and Experience, Published online: Jan 25, 2010 DOI

  621. Geoffrey Fox, Seung-Hee Bae, Jaliya Ekanayake, Xiaohong Qiu, and Huapeng Yuan Parallel Data Mining from Multicore to Cloudy Grids Proceedings of HPC 2008 High Performance Computing and Grids workshop Cetraro Italy July 3 2008

  622. Xiaohong Qiu and Geoffrey Fox Parallel Data Mining for Medical Informatics Technical Report January 13 2009

  623. Nariman Mirzaei Cloud Computing Independent Study Report January 9 2009

  624. Geoffrey Fox, Marlon Pierce, Xiaohong Qiu and Shrideep Pallickara Summary of Community Grid laboratory Activities January to December 2008 Technical Report January 5 2009

  625. Carl Lagoze describing work by University of Cambridge (Peter Murray Rust, Jim Downing), Cornell University (Carl Lagoze, Theresa Velden), Indiana University (Geoffrey Fox, Marlon Pierce), Penn State University (C. Lee Giles, Prasenjit Mitra, Karl Mueller), PuBChem (Steve Bryant), and University of Southampton (Jeremy Frey, Simon Coles). The OreChem Project paper at WebSci'09: Society On-Line Athens, Greece 18th–20th March, 2009

  626. Marlon E. Pierce, Xiaoming Gao, Sangmi L. Pallickara, Zhenhua Guo, Geoffrey C. Fox QuakeSim Portal and Services: New Approaches to Science Gateway Development Techniques Concurrency and Computation: Practice and Experience Special Issue on Computation and Informatics in Earthquake Science: The ACES Perspective 6th ACES International workshop Cairns, Australia 11 - 16 May 2008

  627. Geoffrey Fox Distributed and Parallel Programming Environments and their performance Abstract of keynote talk at Microsoft Research eScience Workshop December 9 2008 IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  628. Yili Gong, Marlon E. Pierce, and Geoffrey C. Fox Dynamic Resource-Critical Workflow Scheduling in Heterogeneous Environments Technical Report December 6 2008

  629. Jong Y. Choi, Joshua Rosen, Siddharth Maini, Marlon E. Pierce, and Geoffrey C. Fox Collective Collaborative Tagging System Proceedings of GCE08 workshop at SC08 Austin Texas November 16 2008

  630. Sangyoon Oh, Jai-Hoon Kim and Geoffrey Fox Real-Time Performance Analysis for Publish/Subscribe Systems Future Generation Computer Systems 26 (2010) 318-323 DOI

  631. Mehmet S. Aktas, Geoffrey Fox and Marlon Pierce Information Federation in Grids 4th International Conference on Semantics, Knowledge and Grid (SKG 2008) Beijing China December 3-5 2008

  632. Shantenu Jha, Andre Merzky and Geoffrey Fox Programming Abstractions for Clouds CCA-08 Cloud Computing and its Applications Chicago ILL October 22-23 2008

  633. Geoffrey Fox and Marlon Pierce Web 2.0 and Cloud Computing Abstract of talk at APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)

  634. Marlon Pierce and Geoffrey Fox QuakeSim Web Computing Infrastructure Abstract of talk at APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)

  635. Jim Basney, Stuart Martin, JP Navarro, Marlon Pierce, Tom Scavo, Leif Strand, Tom Uram, Nancy Wilkins-Diehr, Wenjun Wu, Choonhan Youn Innovative and Collaborative Problem Solving Environments (PSE) in Distributed Resources at PSE Workshop08 in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008

  636. Youngik Yang, Jong Youl Choi, Kwangmin Choi, Marlon Pierce, Dennis Gannon and Sun Kim BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  637. Sangmi Lee Pallickara and Marlon Pierce SWARM: Scheduling Large-scale Jobs over the Loosely-Coupled HPC Clusters Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  638. Shrideep Pallickara, Jaliya Ekanayake, and Geoffrey Fox. An Overview of the Granules Runtime for Cloud Computing. Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  639. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox Map-Reduce for Data Intensive Scientific Analyses .(Earlier version Map-Reduce for Data Intensive Scientific Analyses ) Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008

  640. Seung-Hee Bae Parallel Multidimensional Scaling Performance on Multicore Systems at workshop on Advances in High-Performance E-Science Middleware and Applications in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008

  641. Kangseok Kim, Rajarshi Guha, Marlon E. Pierce, Geoffrey C. Fox, David J. Wild, Kevin E. Gilbert SQMD: Architecture for Scalable, Distributed Database System built on Virtual Private Servers Proceedings of "eScience for Cheminformatics and Drug Discovery" workshop at eScience 2008 , Indianapolis, IN Dec 12, 2008.

  642. Yili Gong, Marlon Pierce and Geoffrey Fox Dynamic Resource-Critical Workflow Scheduling in Heterogeneous Environments Technical Report August 10 2008

  643. Kangseok Kim, Wenjun Wu and Geoffrey Fox XGSP-Floor: Floor Control for Synchronous and Ubiquitous Collaboration Technical Report August 2 2008

  644. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox Performance of Data Intensive Supercomputing Runtime Environments Technical report August 1 2008

  645. Geoffrey Fox Integrating Parallel and Distributed Computing across Scientific and Web 2.0 Applications Abstract of keynote talk at 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 24-26 2008

  646. Xiaohong Qiu (presenter), Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Parallel Data Mining on Multicore Clusters (Old version Parallel Data Mining on Multicore Systems ) 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 24-26 2008

  647. Marlon Pierce Editorial Introduction: Special Issue on Grids and Geospatial Information Systems Special Issue Editorial Introduction: Grids and Geospatial Information Systems. Concurrency and Computation: Practice and Experience 20(14): 1611-1615 (2008)

  648. Linda B. Hayden, Geoffrey Fox, Anthony Adade Implementing Cyberinfrastructure in Support of Greenland and Antarctic SAR Data Sets Abstract ( Presentation ) for AARSE Conference . 7th International Conference of the African Association of Remote Sensing of the Environment (AARSE)-2008 Accra Ghana October 27-31 2008

  649. Marlon E. Pierce, Geoffrey C. Fox, Jong Y. Choi, Zhenhua Guo, Xiaoming Gao, and Yu Ma Using Web 2.0 for Scientific Applications and Scientific Communities To appear in Concurrency and Computation: Practice and Experience Special Issue for 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  650. Shantenu Jha, Andre Merzky and Geoffrey Fox Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Open Grid Forum Information Document July 14 2008

  651. Geoffrey Fox Parallel Data Mining from Multicore to Cloudy Grids INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING AND GRIDS HPC2008 Cetraro Italy June 30 - July 4, 2008

  652. Beytullah Yildiz, Geoffrey Fox, Shrideep Pallickara An Orchestration for Distributed Web Service Handlers The Third International Conference on Internet and Web Applications and Services ICIW 2008 June 8-13, 2008 - Athens, Greece

  653. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce, Principles and Experiences: Building a Hybrid Metadata Service for Service Oriented Architecture based Grid Applications , accepted for The Third International IEEE International Conference on Internet and Web Applications and Services ICIW'08 June 8-13, 2008 - Athens, Greece

  654. Alex Ramirez, Geoffrey Fox, Al Kuslikis, Richard Alo, Karl Barnes, Diane Baxter, and Julie Foertsch Engaging Minority-Serving Institutions (MSIs) in Cyberinfrastructure (CI) through CI Days The 3rd annual TeraGrid Conference , TeraGrid '08 All Hands Meeting Riviera Hotel and Casino in Las Vegas Nevada, June 9-13 2008

  655. Xiaohong Qiu, Geoffrey C. Fox (presenter), Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen PARALLEL CLUSTERING AND DIMENSIONAL SCALING ON MULTICORE SYSTEMS Invited talk at the 2008 High Performance Computing and Simulation Conference (HPCS 2008) In Conjunction With The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Nicosia, Cyprus June 3 - 6, 2008

  656. Jong Youl Choi Clustering Analysis of Collaborative Tagging Systems By Using The Graph Model Technical Report May 25 2008

  657. Kangseok Kim, Rajarshi Guha, Marlon E. Pierce, Geoffrey C. Fox, David J. Wild, Kevin E. Gilbert Architecture for Scalable, Distributed Database System built on Multicore Servers Technical report May 21 2008

  658. Marlon E. Pierce Geoffrey C. Fox Joshua Rosen Siddharth Maini and Jong Y. Choi Social Networking for Scientists Using Tagging and Shared Bookmarks: a Web 2.0 Application 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  659. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox Collaborative Framework for Scientific Data Analysis 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  660. Ahmet Fatih Mustacoglu and Geoffrey Fox Hybrid Consistency Framework for Distributed Annotation Records in a Collaborative Environment 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  661. Geoffrey Fox, Alex Ho, Rui Wang, Edward Chu and Isaac Kwan A Collaborative Sensor Grids Framework 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19-23, 2008

  662. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, and Seung-Hee Bae Parallel Data Mining on Multicore Systems Technical Report May 13 2008

  663. Shantenu Jha, Andre Merzky, Geoffrey Fox Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Concurrency and Computation: Practice"c0"> Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Modes Technical Report April 8 2008)

  664. Ahmet Sayar, Geoffrey C. Fox , Marlon E. Pierce Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems (old version Supporting Event-based Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems ) chapter in book " Grid Technology for Maximizing Collaborative Decision Management and Support: Advancing Effective Virtual Organizations"

  665. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox An Architecture for Composable Scientific Data Analysis Technical Report March 10 2008

  666. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, Parallel Datamining on Multicore Systems Technical Report February 20 2008

  667. Marlon Pierce and Geoffrey Fox Web 2.0 and Geo-sciences Abstract for 6th ACES International Workshop Cairns, Australia from 11 to 16 May 2008.

  668. Pierce, M, Gao, X, Fox, G, Granat, R and Donnellan, A Services and Components for the QuakeSim Project Abstract for 6th ACES International Workshop Cairns, Australia from 11 to 16 May 2008.

  669. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox Architecture for Composable Scientific Data Analysis Technical Report January 31 2008

  670. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of Multicore Systems on Parallel Data Clustering with Deterministic Annealing ICCS 2008: "Advancing Science through Computation" Conference ; ACC CYFRONET and Institute of Computer Science AGH University of Science and Technology Kraków, POLAND; June 23-25, 2008. Springer Lecture Notes in Computer Science Volume 5101, pages 407-416, 2008. DOI

  671. Beytullah Yildiz, Shrideep Pallickara and Geoffrey Fox An Orchestration for Distributed Web Service Handlers Technical Report January 15 2008

  672. Galip Aydin, Ahmet Sayar, Harshawardhan Gadgil, Mehmet S. Aktas, Geoffrey C. Fox, Sunghoon Ko, Hasan Bulut,and Marlon E. Pierce Building and Applying Geographical Information System Grids Special Issue on Geographical information Systems and Grids based on GGF15 workshop ,Concurrency and Computation: Practice and Experience 20(14): 1653-1695 (2008)

  673. Mehmet S. Aktas, Sangyoon Oh, Geoffrey C. Fox, Marlon E. Pierce XML Metadata Services Special Issue for 2nd International Conference on Semantics, Knowledge and Grid SKG2006 Guilin China October 31 - November 3 2006. Concurrency and Computation: Practice and Experience 20(7): 801-823 (2008)

  674. Geoffrey Fox, Marlon Pierce and Shrideep Pallickara Summary of CGL Lab Activities January-December 2007 Technical Report December 31 2007

  675. Geoffrey Fox and Marlon Pierce Grids meet Too much Computing, Too much Data and never Too much Simplicity White Paper December 27 2007

  676. Byounghoon Lee, Sunghwa Lim, Jai-Hoon Kim , and Geoffrey Fox Lease Based Consistency Scheme in the Web Environment Future Generation Computer Systems Volume 25, Issue 1, January 2009, Pages 8-19

  677. Geoffrey Fox and Marlon Pierce Grids Challenged by a Web 2.0 and Multicore Sandwich Special Issue of Concurrency Compuitation:Practice and Experience on Seventh IEEE International Symposium on Cluster Computing and the Grid — CCGrid 2007, Keynote Talk Rio de Janeiro Brazil May 15 2007

  678. Shrideep Pallickara, Hasan Bulut and Geoffrey Fox Fault-Tolerant Reliable Delivery of Messages in Distributed Publish/Subscribe Systems to appear in International Journal of Autonomic Computing 2008

  679. Marlon Pierce et al Open Grid Computing Environments (OGCE) Annual Report: September 1, 2003-August 31, 2007 prepared December 2007

  680. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Distributed High Performance Grid Information Service Technical Report December 2007

  681. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Federation in Grid Information Services Technical Report December 2007

  682. Geoffrey C. Fox, Rajarshi Guha, Donald F. McMullen, Ahmet Fatih Mustacoglu, Marlon E. Pierce, Ahmet E. Topcu, and David J. Wild Web 2.0 for Grids and e-Science INGRID 2007 - Instrumenting the Grid 2nd International Workshop on Distributed Cooperative Laboratories - S.Margherita Ligure Portofino, ITALY, April 18 2007

  683. Marlon E. Pierce, Geoffrey C. Fox, Galip Aydin, Zhigang Qi, Andrea Donnellan, Jay Parker and Robert Granat QuakeSim: Web Services, Portals, and Infrastructure for Geophysics December 19 2007 to be published in 2008 IEEE Aerospace Conference March 1-8 2008, Big Sky MT

  684. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox A Scalable Framework for the Collaborative Analysis of Scientific Data Technical Report December 12 2007 submitted to CCGrid Doctoral Symposium

  685. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Multi-Paradigm Messaging Runtime Integrating Grids and Multicore Systems (updated from original) September 23 2007 published in proceedings of eScience 2007 Conference Bangalore India December 10-13 2007

  686. A. Sayar, G. C. Fox, M. Pierce Supporting Event-based Unified Data Access/query over Integrated Data-views for Decision Making in Geographic Information Systems Technical Report December 1 2007

  687. Andrea Donnellan, Jay Parker, Robert Granat, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Rami Al-Ghanmi, Lisa Grant, Walter Brooks QuakeSim: Efficient Modeling of Sensor Web Data in a Web Services Environment November 30 2007 to be published in 2008 IEEE Aerospace Conference March 1-8 2008, Big Sky MT

  688. Xiaohong Qiu, Geoffrey C. Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of Multicore Systems on Parallel Datamining Services Technical report November 19 2007

  689. Geoffrey Fox, Seung-Hee Bae, Rajarshi Guha, Marlon E. Pierce, Xiaohong Qiu, David J. Wild , H. Yuan High Performance Robust Datamining for Cheminformatics PAPER ID: 1168842 at Division of Chemical Information session on Cheminformatics: From Teaching to Research Tuesday, April 8, 2008 from 11:35 AM to 12:00 PM at Spring 2008 American Chemical Society National Meeting and Exposition Sunday, April 6 — Thursday, April 10, 2008 New Orleans, LA USA

  690. Rajarshi Guha, Geoffrey Fox, Kevin E. Gilbert, Marlon Pierce and David Wild I don't care where my data and methods are: A web-service approach for distributed access to methods, data and models. PAPER ID: 1170920 at Division of Chemical Information session on Cheminformatics: From Teaching to Research Tuesday, April 8, 2008 at Spring 2008 American Chemical Society National Meeting and Exposition Sunday, April 6 — Thursday, April 10, 2008 New Orleans, LA USA

  691. Mehmet A. Nacar, Marlon E. Pierce, Andrea Donnellan, Geoffrey C. Fox Building QuakeSim Portlets with GTLAB Paper at GCE07 Workshop November 11-12 2007 at SC07 Reno Nevada

  692. Ali Kaplan, Geoffrey C. Fox, Gregor von Laszewski GridTorrent Framework: A High-performance Data Transfer and Data Sharing Framework for Scientific Computing Paper at GCE07 Workshop November 11-12 2007 at SC07 Reno Nevada

  693. Jong Youl Choi, Youngik Yang, Sun Kim, Dennis Gannon V-Lab-Protein: Virtual Collaborative Lab for Protein Sequence Analysis Proceedings of Workshop on High-Throughput Data Analysis for Proteomics and Genomics as part of BIBM Silicon Valley Fremont CA, November 2-4 2007

  694. Ahmet Fatih Mustacoglu and Geoffrey Fox Hybrid Consistency Framework for Distributed Annotation Records Technical Report October 30 2007

  695. Marlon Pierce Web 2.0: Social Networking for MSI Researchers , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  696. Geoffrey Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu Web 2.0 technology and Semantic Research Grid(SRG) , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  697. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Web 2.0 Grids and Cyberinfrastructure , Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  698. Donald F. (Rick) McMullen, Marlon Pierce, Carol Deng, Kia Huffman Real-time Web 2.0: Evolution of Middleware for Grid-based Instruments and Sensors Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  699. Marlon Pierce, Geoffrey Fox, Lee Dirks, eChemistry, Web 2.0 Workshop at The 21st Open Grid Forum - OGF21 Grand Hyatt Seattle Seattle, Washington October 15-19, 2007

  700. Milan Jovovic, Geoffrey Fox Multi-dimensional data scaling – dynamical cascade approach Technical Report September 26 2007

  701. Geoffrey Fox, Seung-Hee Bae, Rajarshi Guha, Marlon E. Pierce, Xiaohong Qiu, David J. Wild , H. Yuan, Neil M Devadasan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Parallel Clustering in a Cheminformatics Grid The 2007 Microsoft eScience Workshop at RENCI (The Friday Center for Continuing Education UNC - Chapel Hill 100 Friday Center Drive Chapel Hill, NC 27599-1020) October 21-23 2007

  702. Geoffrey C. Fox, Marlon E. Pierce, Ahmet Fatih Mustacoglu, and Ahmet E. Topcu Web 2.0 for E-Science Environments Keynote Presentation at 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  703. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox GTLAB: Grid Tag Libraries Supporting Workflows within Science Gateways 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  704. Ahmet E. Topcu , Ahmet Fatih Mustacoglu, Geoffrey Fox , Aurel Cami Integration of Collaborative Information Systems in Web 2.0 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 28-30 2007

  705. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of a Multi-Paradigm Messaging Runtime on Multicore Systems Abstract of Poster at Grid 2007 Conference , Omni Austin Downtown Hotel Austin Texas, September 19 2007

  706. Donnellan, Andrea (JPL), John Rundle (UC Davis), Lisa Grant (UC Irvine), Dennis McLeod (USC), Geoffrey Fox (Indiana U), Marlon Pierce (Indiana U), Terry Tullis (Brown U), Walt Brooks (NASA Ames), Jay Parker (JPL), and Robert Granat (JPL) Abstract for 2007 SCEC Annual Meeting , September 9-12 at the Palm Springs Hilton Hotel in Palm Springs, California.

  707. Geoffrey C. Fox and Hai Zhuge Editorial for Special Issue of the 2nd International Conference on Semantics, Knowledge and Grid Concurrency and Computation: Practice and Experience Special Issue for 2nd International Conference on Semantics, Knowledge and Grid SKG2006 Guilin China October 31 - November 3 2006

  708. Ahmet E. Topcu , Ahmet Fatih Mustacoglu, Geoffrey Fox , Aurel Cami Integration of Collaborative Information Systems in Web 2.0 Technical report June 27 2007

  709. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox GTLAB: Grid Tag Libraries Supporting Workflows within Science Gateways Technical report June 20 2007

  710. Shrideep Pallickara, Hasan Bulut, and Geoffrey Fox. Fault-Tolerant Reliable Delivery of Messages in Distributed Publish/Subscribe Systems . Proceedings of the 4th IEEE International Conference on Autonomic Computing. Jacksonville, Florida. June 12-15 2007

  711. Yili Gong, Marlon E. Pierce, and Geoffrey C. Fox Matchmaking Scientific Workflows in Grid Environments (updated from original ) Proceedings of IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2007), November 19 - 21, 2007, at Cambridge, USA

  712. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management of Grid Services Technical Report May 19 2007 to appear in Proceedings of IEEE Cluster 2007

  713. Andrea Donnellan, Jay Parker, Charles Norton, Gregory Lyzenga, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Lisa Grant, Walter Brooks and Terry Tullis QuakeSim: Enabling Model Interactions in Solid Earth Science Sensor Webs NASA Science Technology Conference NSTC 2007 University of Maryland June 19-21 2007

  714. Marlon E. Pierce, Geoffrey Fox, Huapeng Yuan, and Yu Deng Cyberinfrastructure and Web 2.0"High Performance Computing and Grids in Action" (L. Grandinetti Editor) published by IOS Press, Amsterdam, as the volume no 16 in the series "Advances in Parallel Computing"., Proceedings of HPC2006 July 4 2006 Cetraro Italy

  715. Xiaohong Qiu Multi-Paradigm Run Time MPR for Multicore Systems Position Paper for Microsoft Multicore Computing Workshop Seattle June 20-21 2007

  716. Fatih Mustacoglu Event-Based Model for Reconciling Digital Entries May 3 PhD Proposal Exam Indiana University Bloomington May 3 2007

  717. Marlon E. Pierce, Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin,Harshawardhan Gadgil, Zhigang Qi and Ahmet Sayar The QuakeSim Project: Web Services for Managing Geophysical Data and Applications PAGEOPH Special Issue for 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii Pure and Applied Geophysics Volume 165, Numbers 3-4 / April, 2008 pages 635-651 DOI

  718. Sang Boem Lim, Han-Ku Lee, Bryan Carpenter, and Geoffrey Fox Runtime Support for Scalable Programming in Java in Journal of Supercomputing Special Issue from Third International Symposium on Parallel and Distributed Processing and Applications ( ISPA'05), Nanjing , China November 2-5 2005 DOI

  719. Mehmet A. Nacar, Marlon E. Pierce, Geoffrey C. Fox Extending GTLAB Tag Libraries for Grid Workflows Technical Report April 18 2007

  720. Xiaohong Qiu, Geoffrey Fox, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Multi-Paradigm Messaging Run Time on Multicore Systems Technical Report April 16 2007

  721. Zao Liu, Marlon E. Pierce, and Geoffrey C. Fox Implementing a Caching and Tiling Map Server: a Web 2.0 Case Study Proceedings of The 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007)

  722. Ahmet Fatih Mustacoglu, Ahmet E. Topcu Aurel Cami, Geoffrey Fox A Novel Event-Based Consistency Model for Supporting Collaborative Cyberinfrastructure Based Scientific Research Proceedings of The 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007)

  723. Galip Aydin, Zhigang Qi, Marlon E. Pierce, Yehuda Bock, and Geoffrey C. Fox Building a Sensor Grid for Real Time Global Positioning System Data Proceedings of Workshop on Principles of Pervasive Information Systems Design Sunday, May 13, 2007 In conjunction with Pervasive 2007 Toronto, Ontario, Canada

  724. Ahmet Fatih Mustacoglu, and Geoffrey Fox AJAX Integration Approach for Collaborative Calendar-Server Web Services Proceedings of The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Las Vegas, Nevada, USA (June 25-28, 2007)

  725. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara Scalable, Fault-tolerant Management in a Service Oriented Architecture Poster in pages 235-236 of proceedings for IEEE International Symposium in High-Performance Distributed Computing (HPDC) Monterey California June 27-29 2007 Scalable, fault-tolerant management in a service oriented architecture Harshawardhan Gadgil , Geoffrey Fox , Shrideep Pallickara , Marlon Pierce HPDC '07 Proceedings of the 16th international symposium on High performance distributed computing, 2007 frames are not supported

  726. Mehmet A. Nacar, Jong Y. Choi, Marlon E. Pierce, and Geoffrey C. Fox Building a Grid Portal for Teragrid's Big Red Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  727. Richard A. Aló, Karl Barnes, Diane Baxter, Geoffrey Fox, Al Kuslikis, and Alex Ramirez Advances in the MSI Community and the MSI CyberIn-frastructure Empowerment Coalition (MSI-CIEC) Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  728. Linda Hayden, Geoffrey Fox, and Prasad Gogineni Cyberinfrastructure for Remote Sensing of Ice Sheets Proceedings of TeraGrid 2007 Conference Madison Wisconsin June 4-8 2007

  729. Geoffrey Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu, Aurel Cami SRG: A Digital Document-Enhanced Service Oriented Research Grid April 7 2007 accepted for IEEE International Conference on Information Reuse and Integration (IEEE IRI-2007) August 13 - 15, 2007 Las Vegas, USA

  730. Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers Report on the 2006 NSF Workshop on Challenges of Scientific Workflows Computer, vol. 40, no. 12, pp. 24-32, Dec., 2007. DOI . See original meeting

  731. Galip Aydin An Overview of the Open Geospatial Consortium Standards and their use in Community Grids Laboratory Technical Report February 23 2007

  732. Jay Parker, Andrea Donnellan and Marlon Pierce QuakeSim lessons for NASA Earth Science sensor webs February 12 2007 White paper for ESTO / AIST Sensor Web PI Meeting - February 13-14, 2007, San Diego

  733. Jack Dongarra, Dennis Gannon, Geoffrey Fox, and Ken Kennedy The Impact of Multicore on Computational Science Software Technical Report February 5 2007; CTWatch Quarterly Volume 3, Number 1 February 2007

  734. Xiaohong Qiu, Geoffrey Fox, Alex Ho Analysis of Concurrency and Coordination Runtime CCR and DSS for Parallel and Distributed Computing Technical Report January 21 2007

  735. Galip Aydin, Zhigang Qi, Marlon E. Pierce, Geoffrey C. Fox, Yehuda Bock Architecture, Performance, and Scalability of a Real-Time Global Positioning System Data Grid 17 January 2007, Special issue on Computational Challenges in Geosciences in PEPI (Physics of the Earth and Planetary Interiors) 163 (2007) 347-359, DOI

  736. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management in a Service Oriented Architecture Technical Report January 16 2007

  737. Shrideep Pallickara, Jaliya Ekanayake, Geoffrey Fox, A Scalable Approach for the Secure and Authorized Tracking of the Availability of Entities in Distributed Systems . (To appear) Proceedings of the 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 2007). Long Beach, California.

  738. Robert Granat, Galip Aydin, Marlon Pierce and Zhigang Qi, Analysis of Streaming GPS Measurements of Surface Displacement Through a Web Services Environment , 2007 IEEE Symposium on Computational Intelligence and Data Mining, April 1-5 2007, Honolulu, HI, USA

  739. Robert Granat, Galip Aydin, Zhigang Qi, and Marlon Pierce, GPS Sensor Web Time Series Analysis Using SensorGrid Technology American Geophysical Union AGU Fall Meeting , Moscone Conventon Center, San Francisco, CA, USA, 11–15 December 2006.

  740. Geoffrey Fox and Xiaoping Sun, Progress of the Knowledge Grid Editorial for special issue for 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005 published in Special Issue: Progress of the Knowledge Grid Concurrency and Computation: Practice and Experience Volume 19, Issue 15, Date: October 2007, Pages: 2011-2012 DOI

  741. Geoffrey C. Fox, Ahmet Fatih Mustacoglu, Ahmet E. Topcu, Aurel Cami SRG: A Digital Document-Enhanced Service Oriented Research Grid Technical Report, November 28 2006

  742. M P Thomas, J Burruss, L Cinquini, G Fox, D Gannon, L Gilbert, G von Laszewski, K Jackson, D Middleton, R Moore, M Pierce, B Plale, A Rajasekar, R Regno, E Roberts, D Schissel, A Seth and W Schroeder, Grid portal architectures for scientific applications SciDAC 2005, SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING 26–30 June 2005, San Francisco, CA, USA. Journal of Physics Volume 16, 2005 , Pages 596-600

  743. Yili Gong, Yongqiang Xiong, Qian Zhang, Zhensheng Zhang, Wenjie Wang and Zhiwei Xu. Anycast Routing in Delay Tolerant Networks . Proceedings of Globecom'06, San Francisco, CA, Nov. 27 - Dec. 1, 2006.

  744. Shrideep Pallickara, Geoffrey Fox, Mehmet Aktas, Harshawardhan Gadgil, Beytullah Yildiz, Sangyoon Oh, Sima Patel, Marlon Pierce and Damodar Yemme A Retrospective on the Development of Web Service Specifications December 2006. Chapter in Book Securing Web Services: Practical Usage of Standards and Specifications. Editor Periorellis Panos, University of Newcastle Upon Tyne. Published by Information Science Reference (IGI Global),November 1 2007. ISBN-10: 1599046393; ISBN-13: 978-1599046396.

  745. Mehmet Nacar, Marlon Pierce, Gordon Erlebacher, Geoffrey Fox. Designing Grid Tag Libraries and Grid Beans Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006

  746. Hao Yin, Sofia Brenes-Barahona, Donald F. McMullen, Marlon Pierce, Kianosh Huffman, Geoffrey Fox, A PERMIS-based Authorization Solution between Portlets and Back-end Web Services . Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006

  747. Xiao Dong, Kevin Gilbert, Rajarshi Guha, Jungkee Kim, Marlon Pierce, Geoffrey C. Fox and David J. Wild Smart Mining of Drug Discovery Information: 1. A web service and workflow infrastructure Submitted to Journal of Chemical Information and Modeling October 2006

  748. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management in a Service Oriented Architecture Technical Report October 10 2006

  749. Smitha Ajay and Jaliya Ekanayake ANALYSIS OF THE USAGE STATISTICS OF ROBOTS EXCLUSION STANDARD IADIS International Conference WWW/Internet 2006 Murcia, Spain 5-8 October 2006

  750. Marlon E. Pierce, Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Harshawardhan Gadgil, Zhigang Qi, and Ahmet Sayar The Solid Earth Research Virtual Observatory: Web Services for Managing Geophysical Data and Applications Unpublished draft for PAGEOPH Special Issue for 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii

  751. Andrea Donnellan, Jay Parker, Charles Norton, Gregory Lyzenga, Margaret Glasscoe, Geoffrey Fox, Marlon Pierce, John Rundle, Don McLeod, Lisa Grant, Walter Brooks, Terry Tullis QuakeSim: Enabling Model Interactions in Solid Earth Science Sensor Webs Technical Report October 2006

  752. Srinath Perera, Chathura Herath, Jaliya Ekanayake, Eran Chinthaka, Ajith Ranabahu, Deepal Jayasinghe, Sanjiva Weerawarana,Glen Daniels Axis2, Middleware for Next Generation Web Services Proceedings of the IEEE International Conference on Web Services (ICWS'06) Hyatt Regency O'Hare, Rosemont, Illinois, 60018, USA September 18-22 2006

  753. Mehmet S. Aktas, Sangyoon Oh, Geoffrey C. Fox, and Marlon E. Pierce XML Metadata Services and Older version Proceedings of SKG2006 Guilin China October 31 - November 3 2006.

  754. Fang Juan, Geoffrey Fox, Marlon Pierce Grid Portal System Based on GPIR Proceedings of SKG2006 Guilin China October 31 - November 3 2006.

  755. Geoffrey Fox and Dennis Gannon A Survey of the Role and Use of Web Services and Service Oriented Architectures in Scientific/Technical Grids Technical Report August 2006

  756. Sangyoon Oh and Geoffrey Fox Optimizing Web Service Messaging Performance in Mobile Computing July 2006. Published in Special Issue in Grid Technology and applications of Journal Of Future Generation Computer Systems, Elsevier, Volume 23, Issue 4, May 2007, Pages 623-632 DOI

  757. Xiaohong Qiu and Anumit Jooloor Web Service Architecture for e-Learning Special issue for EISTA 2004 International Conference on Education and Information Systems: Technologies and Applications July 21-25 2004 Orlando published in Journal of Systemics, Cybernetics and Informatics Volume 3, Issue 5 2006

  758. Open Grid Computing Environments NSF NMI Project report (Marlon Pierce PI) Open Grid Computing Environments (OGCE) Annual Report: June 1, 2005-May 31, 2006 June 26 2006

  759. Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang. A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems . Proceedings (pages 215-222) of the 7th IEEE/ACM International Conference on Grid Computing (GRID 2006). Barcelona, Spain; September 28th-29th 2006. DOI

  760. Hao Yin, Donald F. McMullen, Mehmet A. Nacar, Marlon Pierce, Kianosh Huffman, Geoffrey Fox and Yu Ma Providing Portlet-Based Client Access to CIMA-Enabled Crystallographic Instruments, Sensors, and Data Technical Report April 21 2006 with short poster version for 7th IEEE/ACM International Conference on Grid Computing (GRID 2006). Barcelona, Spain.

  761. Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil and Marlon E. Pierce Streaming Data Services to Support Archival and Real-Time Geographical Information System Grids Sixth Annual NASA Earth Science Technology Conference June 27th - 29th College Park, MD

  762. Richard Alo, Karl Barnes, Diane Baxter, Geoffrey Fox, Al Kuslikis, Calvin Lowe, Alex Ramirez, Selena Singleton MSI-CIEC: MSI Cyberinfrastructure Empowerment Coalition and the TeraGrid (Abstract ) TeraGrid '06 Indianapolis IN June 12-15 2006

  763. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara and Marlon Pierce Managing Grid Messaging Middleware Proceedings of IEEE Conference on the Challenges of Large Applications in Distributed Environments ( CLADE) Paris France June 19 2006, pp. 83 - 91 DOI

  764. Geoffrey Fox and Hai Zhuge GCC2005 Special Issue on Autonomous Grid Computing Fourth International Conference on Grid and Cooperative Computing ( GCC2005), held in Beijing, China, during Nov 30-Dec 3, 2005. Editorial for Special Issue: Autonomous Grid Computing, Concurrency and Computation: Practice and Experience Volume 19, Issue 7, Date: May 2007, Pages: 943-944 DOI

  765. Sangyoon Oh, Mehmet S. Aktas, Marlon Pierce, Geoffrey C. Fox Optimizing Web Service Messaging Performance Using a Context Store for Static Data Invited paper for 5th WSEAS Int.Conf. on TELECOMMUNICATIONS and INFORMATICS (TELE-INFO '06 ), Istanbul, Turkey, May 27-29, 2006

  766. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System March 25 2006 to appear in book "Service-Oriented Architecture - Concepts and Cases" published by Institute of Chartered Financial Analysts of India (ICFAI) University

  767. Geoffrey Fox Grid-based Information Architecture for iSERVO International Solid Earth Research Virtual Organization Abstract for Western Pacific Geophysics Meeting ( WPGM) 24-27 July 2006 Beijing China

  768. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Fault Tolerant High Performance Information Services for Dynamic Collections of Grid and Web Services FGCS Special issue from 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005; Future Generation Computer Systems Volume 23, Issue 3, March 2007, Pages 317-337 DOI

  769. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Andrea Donnellan, Harshawardhan Gadgil, Robert Granat, Shrideep Pallickara, Jay Parker, Marlon E. Pierce, Sangyoon Oh, John Rundle, Ahmet Sayar, and Michael Scharber Building Sensor Filter Grids: Information Architecture for the Data Deluge IEEE Proceedings of 1st International Conference SKG2005 on Semantics, Knowledge and Grid Beijing China November 27-29 2005 DOI

  770. Jay Alameda, Marcus Christie, Geoffrey Fox, Joe Futrelle, Dennis Gannon, Mihael Hategan, Gregor von Laszewski, Mehmet A. Nacar, Marlon Pierce, Eric Roberts, Charles Severance, and Mary Thomas The Open Grid Computing Environments Collaboration: Portlets and Services for Science Gateways March 2006. Special Issue for Science Gateways GGF14 workshop . Concurrency and Computation: Practice and Experience Volume 19, Issue 6, Date: 25 April 2007, Pages: 921-942 DOI

  771. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Services for Dynamically Assembled Semantic Grids IEEE Proceedings of 1st International Conference on SKG2005 Semantics, Knowledge and Grid Beijing China November 27-29 2005 page 10 DOI

  772. Geoffrey Fox, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, and Wenjun Wu Management of Real-Time Streaming Data Grid Services March 12 2006. Special Issue from Grid and Cooperative Computing 4th International Conference November 30 to December 3 2005 Beijing China. Concurrency and Computation: Practice and Experience Volume 19, Issue 7, Date: May 2007, Pages: 983-998 DOI

  773. Geoffrey Fox Collaboration and Community Grids Special Session VI: Collaboration and Community Grids Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp 419-428. ISBN 0-9785699-0-3 DOI

  774. Ahmet Fatih Mustacoglu, Wenjun Wu, and Geoffrey Fox Internet Calendaring and Scheduling Core Object Specification (iCalendar) Compatible Collaborative Calendar-Server (CCS) Web Services Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp12-17. ISBN 0-9785699-0-3 DOI

  775. Wenjun Wu, Tao Huang, Geoffrey Fox Building Scalable and High Efficient Java Multimedia Collaboration Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp18-25. ISBN 0-9785699-0-3 DOI

  776. Minjun Wang, Geoffrey Fox and Marlon Pierce Collaboration Entities on Deterministic Finite Automata Proceedings of IEEE 2006 International Symposium on Collaborative Technologies and Systems CTS 2006 conference Las Vegas May 14-17 2006; IEEE Computer Society, Ed: Smari, Waleed and McQuay, William, pp26-37. ISBN 0-9785699-0-3 DOI

  777. Sangyoon Oh and Geoffrey Fox Optimizing Web Service Messaging Performance in Mobile Computing Technical Report, March 1 2006

  778. Hyunju Kim, Loretta Moore, Robert Whalin, Geoffrey Fox, An Experience on a Distance Education Course over the Access Grid Nodes Proceedings of 4th International Conference on Education and Information Systems, Technologies and Applications (EISTA 2006) Orlando, USA, July 20-23, 2006.

  779. Xiaohong Qiu and Anumit Jooloor Web Service Architecture for e-Learning March 2006, to be published in Journal of Systemics, Cybernetics and Informatics

  780. Shrideep Pallickara, Geoffrey Fox and Harshawardhan Gadgil. On the Secure Creation, Organization and Discovery of Topics in Distributed Publish/Subscribe Systems . International Journal of High Performance Computing and Networking (IJHPCN). Vol. 5, No. 3, pp.156-167. 2008. Special Issue of extended versions of the 6 best papers at the ACM/IEEE GRID 2005 Workshop.

  781. Sang Boem Lim, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara and Marlon Pierce GridFTP and Parallel TCP Support in NaradaBrokering (To appear) Journal Of Future Generation Computer Systems, published by Elseiver. Special Issue of selected papers from the Sixth International Conference on Algorithms and Architectures for Parallel Processing.

  782. Marvin Theimer, Savas Parastatidis, Tony Hey, Marty Humphrey, Geoffrey Fox An Evolutionary Approach to Realizing the Grid Vision Technical Report February 2006

  783. Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil and Marlon E. Pierce Streaming Data Services to Support Archival and Real-Time Geographical Information System Grids Technical Report February 10 2006

  784. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Managing Grid Messaging Middleware Technical Report February 8 2006

  785. Geoffrey Fox Some Comments on CiteULike Connotea and related Tools Technical Report, January 1 2006

  786. Mehmet A. Nacar, Mehmet S. Aktas, Marlon Pierce, Zhenyu Lu and Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, and David A. Yuen VLab: Collaborative Grid Services and Portals to Support Computational Material Science Dec 30, 2005 Special Issue on Grid Portals based on SC05 GCE'05 Workshop , Concurrency and Computation: Practice and Experience Volume 19, Issue 12, Date: 25 August 2007, Pages: 1717-1728 DOI

  787. Geoffrey Fox Editorial for Special Issue: ACM 2002 Java Grande–ISCOPE Conference Concurrency and Computation: Practice and Experience, Vol. 17, No. 5-6. (2005), pp. 419-422.

  788. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-ku Lee Collective communication for the HPJava programming language Concurrency and Computation: Practice and Experience, Vol. 17, No. 7-8. (June 2005), pp. 867-894. 2002 ACM Java Grande–ISCOPE Conference Part II

  789. Geoffrey Fox, Shrideep Pallickara, Xi Rao Towards enabling peer-to-peer Grids or Original Concurrency and Computation: Practice and Experience archive Volume 17 , Issue 7-8 (June 2005) Pages: 1109 - 1131. 2002 ACM Java Grande–ISCOPE Conference Part II

  790. Andrea Donnellan, John Rundle, John Ries, Geoffrey Fox, Marlon Pierce, Jay Parker, Robert Crippen, Eric DeJong, Ben Chao, Weijia Kuang, Dennis McLeod, Mitsuhiro Matu'ura, Jeremy Bloxham Illuminating Earth's Interior through Advanced Computing Computing in Science and Engg., Vol. 6, No. 1. (January 2004), pp. 36-44. DOI

  791. Mehmet Nacar, Mehmet Aktas, Marlon Pierce, Zhenyu Lu, Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, and David A. Yuen VLab: Collaborative Grid Services and Portals to Support Computational Material Science GCE'05 Workshop on Grid Portals.at SC05 Seattle, WA. November 18 2005

  792. Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Tao Huang Service Oriented Architecture for VoIP conferencing . Special Issue on Voice over IP - Theory and Practice of the International Journal of Communication Systems Volume 19, Issue 4 , Pages 445 - 461 Edited by John Fox, P. Gburzynski DOI

  793. Shrideep Pallickara, Geoffrey Fox, Beytullah Yildiz, Sangmi Lee Pallickara, Sima Patel and Damodar Yemme An Analysis of the Costs for Reliable Messaging in Web/Grid Service Environments Proceedings of the 2005 IEEE International Conference on e-Science and Grid Computing. December 5-8 2005, Melbourne, Australia

  794. Shrideep Pallickara, Harshawardhan Gadgil and Geoffrey Fox On the Discovery of Topics in Distributed Publish/Subscribe systems Proceedings of the IEEE/ACM GRID 2005 Workshop , pp 25-32. November 13-14 2005 Seattle, WA. Also selected as one of the six best papers at the workshop DOI .

  795. Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Building Messaging Substrates for Web and Grid Applications Special Issue on Scientific Applications of Grid Computing Philosophical Transactions of the Royal Society: Mathematical, Physical and Engineering Sciences. Volume 363, Number 1833, pp 1757-1773. August 15, 2005

  796. Andrea Donnellan, John Rundle, Geoffrey Fox, Dennis McLeod, Lisa Grant, Terry Tullis, Marlon Pierce, Jay Parker, Greg Lyzenga, Robert Granat , Margaret Glasscoe QuakeSim and the Solid Earth Research Virtual Observatory with Previous version Published in Special Issue of Pure and Applied Geophysics (PAGEOPH ) for Beijing July 2004 ACES Meeting , Volume 163, Numbers 11-12 / December, 2006 DOI

  797. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Sangyoon Oh, Shrideep Pallickara, Marlon E. Pierce, Ahmet Sayar, and Gang Zhai Grids for Real Time Data Applications Invited talk in proceedings of PPAM 2005 – 6th International Conference on Parallel Processing and Applied Mathematics Poznan Poland September 11-14 2005

  798. Minjun Wang, Geoffrey Fox and Marlon Pierce Thin Client Collaboration Web Services Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean

  799. Ahmet Sayar, Marlon Pierce and Geoffrey Fox Integrating AJAX Approach into GIS Visualization Web Services Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean

  800. Ahmet Fatih Mustacoglu and Geoffrey Fox Internet Calendaring and Scheduling Core Object Specification (iCalendar) Compatible Collaborative Calendar-Server (CCS) Web Services Technical Report November 2005

  801. Minjun Wang A Description of the Implementation of Collaborative ReviewPlus Technical Report July 19 2005. This is detailed description of Collaborative IDL developed for ReviewPlus application

  802. A. Sayar, M. Pierce, G. C. Fox DEVELOPING GIS VISUALIZATION WEB SERVICES FOR GEOPHYSICAL APPLICATIONS ISPRS International Society for Photogrammetry and Remote Sensing Workshop Commission II WG/2 METU, Ankara, Turkey, November, 24-25, 2005

  803. Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems Technical Report October 2005

  804. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Services for Dynamically Assembled Semantic Grids Proceedings of 1st International Conference on SKG2005 Semantics, Knowledge and Grid Beijing China November 27-29 2005

  805. Beytullah Yildiz, Shrideep Pallickara, Geoffrey Fox Experiences in Deploying Services within the Axis Container Proceedings of IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean, with Older version Technical Report October 2005

  806. Geoffrey Fox Community Grids Laboratory Summary September 2005

  807. Sangyoon Oh and Geoffrey C. Fox HHFR: A new architecture for Mobile Web Services: Principles and Implementations Technical report September 2005

  808. Gang Zhai, Geoffrey Fox, Marlon Pierce, Wenjun Wu, Hasan Bulut eSports: Collaborative and Synchronous Video Annotation System in Grid Computing Environment Proceedings of IEEE International Symposium on Multimedia (ISM2005), Pages 95-103, IEEE Computer Society, December 12-14, 2005 Irvine, California, USA, DOI

  809. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Shrideep Pallickara, Marlon Pierce, Ahmet Sayar, Wenjun Wu, and Gang Zhai Real Time Streaming Data Grid Applications Invited talk at TIWDC 2005 CNIT Tyrrhenian International Workshop on Digital Communications July 4-6 2005. Distributed Cooperative Laboratories: Networking, Instrumentation, and Measurements edited by Franco Davoli, Sergio Palazzo, and Sandro Zappatore, pages 253-268; Springer ISBN 0-387-29811-8 2006.

  810. Geoffrey Fox, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, and Wenjun Wu Management of Real-Time Streaming Data Grid Services Invited talk at Fourth International Conference on Grid and Cooperative Computing (GCC2005), held in Beijing, China, during Nov 30-Dec 3, 2005 and Longer Version

  811. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce An Architecture for Supporting Information in Dynamically Assembled Semantic Grids Technical report August 2005.

  812. Jungkee Kim, Geoffrey Fox, and Seong-Joon Yoo. Data Integration Hub for a Hybrid Paper Search. In Proceedings of 9th International Conference on Knowledge-based and Intelligent Information and Engineering Systems (KES) , pages 170-176 volume 3683 DOI of Lecture Notes in Artificial Intelligence. Melbourne Australia 14-16 September, 2005.

  813. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee, Collective Communications for Scalable Programming Proceedings of Third International Symposium on Parallel and Distributed Processing and Applications ( ISPA'05), Nanjing , China November 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3758, Oct 2005, Pages 286 - 297 DOI

  814. Sang Lim, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara and Marlon Pierce GridFTP and Parallel TCP Support in NaradaBrokering Proceedings of 6th International Conference on Algorithms and Architectures for Parallel Processing ICA3PP 2005 Melbourne Australia. October 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3719, Page 93-102 DOI

  815. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee, A Low--Level Communication Library for Java HPC Proceedings of 6th International Conference on Algorithms and Architectures for Parallel Processing. ICA3PP 2005 Melbourne Australia.October 2-5 2005. Springer-Verlag Lecture Notes in Computer Science, Volume 3719, Pages 429 - 434 DOI

  816. Jungkee Kim and Geoffrey Fox. Scalable Hybrid Search on Distributed Databases. In Proceedings of 3rd International Workshop on Autonomic Distributed Data and Storage Systems Management ( ADSM'05) in conjunction with ICCS 2005 , May 22-25 2005, Atlanta GA. Lecture Notes in Computer Science, Springer-Verlag Volume 3516, Pages 431 - 438. DOI

  817. Community Grids Laboratory 2005 Analysis of Grids for Global Information Grid (GiG) and Network Centric Operations and Warfare (NCOW)

  818. Taylor, S.J.E.; Fox, G.; Fujimoto, R.; Pullen, J.M.; Roberts, D.J.; Theodoropoulos, G.K. Revisiting Distributed Simulation and the Grid: A Panel Distributed Simulation and Real-Time Applications, 2005. DS-RT 2005 Proceedings. Ninth IEEE International Symposium Page161. DOI , Montreal October 10-12 2005

  819. Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon E. Pierce, and Ahmet Sayar Algorithms and the Grid August 2005 talk at ALGORITMY 2005 Conference on Scientific Computing Vysoke Tatry, Podbanske March 13-18, 2005. Paper published in a regular issue of the Springer mathematical journal Computing and Visualization in Science (CVS) Volume 12, Issue3 (2009), Page 115. DOI

  820. Dennis Gannon and Geoffrey Fox Workflow in Grid Systems Editorial of special issue of Concurrency and Computation: Practice and Experience based on GGF10 Berlin meeting ; Concurrency and Computation: Practice and Experience Volume 18 , Issue 10 (August 2006) Pages: 1009 - 1019, 2006; DOI

  821. Shrideep Pallickara, Harshawardhan Gadgil and Geoffrey Fox On the Discovery of Brokers in Distributed Messaging Infrastructures Proceedings of IEEE Cluster 2005 , September 27 - 30, 2005, Boston, Massachusetts, USA DOI

  822. Geoffrey Fox, Shrideep Pallickara, Galip Aydin and Marlon Pierce Messaging in Web Service Grid with Applications to Geographical Information Systems Chapter in book based on ON HIGH PERFORMANCE COMPUTING TECHNOLOGY AND APPLICATIONS Cetraro Italy May 31-June 3 2004. “Grid Computing: A New Frontier of High Performance Computing" (ed. L. Grandinetti, Elsevier, Amsterdam, 2005) pages 305-331

  823. Ahmet Sayar, Marlon Pierce and Geoffrey Fox, Message Exchange for Web Service-Based Mapping Services , Proceedings of GeoInformatics'05 , Toronto Canada 17-19 August 2005.

  824. Ahmet Sayar, Mehmet Aktas, Galip Aydin, Marlon Pierce and Geoffrey Fox, Developing a Web Service-Compatible Map Server for Geophysical Applications Technical report June 2005

  825. Lisa B. Grant, Andrea Donnellan, Dennis McLeod, Marlon Pierce, Geoffrey C. Fox, Anne Yun-An Chen, Miryha M. Gould, Sang-Soo Sung, Paul Rundle, “A Web-Service Based Universal Approach to Heterogeneous Fault Databases", Computing in Science and Engg., Vol. 7, No. 4. (July 2005), pp. 51-57. IEEE Link

  826. Harshawardhan Gadgil, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara HPSearch: Service Management and Administration Tool Abstract for VLAB Meeting Minnesota July 21-23 2005

  827. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox. Service-Oriented Architecture for a Scalable Videoconferencing System Proceedings of IEEE International Conference on Pervasive Services 2005 (ICPS'05) July 2005, Santorini, Greece.

  828. Geoffrey Fox Community Grids Laboratory Summary July 2005

  829. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-Ku Lee,
    [Implementation of Collectives for Scalable Programming in
    Java](http://infomall.org/publications/PDPTA05_Collective.pdf) ,
    Proceedings of 2005 International Conference on Parallel and
    Distributed Processing Techniques and Applications (
    PDPTA'05
    June 27-30, 2005, Las Vegas, USA)

  830. Mehmet Aktas, Galip Aydin, Andrea Donnellan, Geoffrey Fox, Robert Granat, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, and Ahmet Sayar Implementing Geographical Information System Grid Services to Support Computational Geophysics in a Service-Oriented Environment NASA Earth-Sun System Technology Conference University of Maryland, Adelphi, Maryland, June 28 - 30, 2005. All material is online for paper , presentation , and abstract

  831. M. P. Thomas, J. Burruss, L. Cinquini, G. Fox, D. Gannon, L. Gilbert, G. von Laszewski, K. Jackson, D. Middleton, R. Moore, M. Pierce, B. Plale, A. Rajasekar, R. Regno, E. Roberts, D. Schissel, A. Seth, and W. Schroeder Grid Portal Architectures for Scientific Applications Proceedings of SciDAC 2005 meeting June 26-30 2005 San Francisco

  832. Galip Aydin, Mehmet S. Aktas, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar SERVOGrid Complexity Computational Environments (CCE) Integrated Performance Analysis Proceedings of Grid Computing Conference , 2005. The 6th IEEE/ACM International Workshop 13-14 Nov. 2005. Page(s): 256 - 261 DOI

  833. Mehmet S. Aktas, Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar, Information Services for Grid/Web Service Oriented Architecture (SOA) Based Geospatial Applications , Technical Report, June, 2005

  834. Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate Technical Report May 2005

  835. Minjun Wang, Geoffrey Fox and Marlon Pierce General Collaboration Structures for Interactive Data Language Applications Technical Report May 2005

  836. Pete Burnap, Hasan Bulut, Shrideep Pallickara, Geoffrey Fox, David Walker, Ali Kaplan, Beytullah Yildiz, and Mehmet A. Nacar Worldwide Messaging Support for High Performance Real-time Collaboration UK e-Science All Hands Meeting September 2005

  837. Shrideep Pallickara, Geoffrey Fox and Hasan Bulut Fault Tolerant Reliable Delivery of Events in Distributed Middleware Systems Technical Report April 2005

  838. Hongbin Liu, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara A Multi-party Implementation of WS-SecureConversation Technical Report April 2005

  839. Geoffrey Fox Global Multimedia Collaboration System Tutorial Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA.PAGES 11-13 DOI

  840. Ahmet Uyar and Geoffrey Fox. Investigating the Performance of Audio/Video Service Architecture I: Single Broker Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA.PAGES 120-127 DOI

  841. Ahmet Uyar and Geoffrey Fox. Investigating the Performance of Audio/Video Service Architecture II: Broker Network. Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA. Pages 128-135 DOI

  842. Sangyoon Oh, Hasan Bulut, Ahmet Uyar, Wenjun Wu, Geoffrey Fox Optimized Communication using the SOAP Infoset For Mobile Multimedia Collaboration Applications Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems CTS05 May 2005, St. Louis Missouri, USA. Pages 32 - 39 DOI

  843. Minjun Wang, Geoffrey Fox and Marlon Pierce Instantiations of Shared Event Model in Grid-based Collaboration Proceedings of the 9th World Multi- Conference on Systemics, Cybernetics and Informatics July 10-13, 2005 - Orlando, Florida, USA

  844. Ahmet Sayar, Marlon Pierce, Geoffrey Fox OGC Compatible Geographical Information Services Technical Report (Mar 2005), Indiana Computer Science Report TR610

  845. Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox Cost Model and Adaptive Scheme for Publish/Subscribe Systems on Mobile Environments Springer-Verlag Lecture Notes in Computer Science 3516, pp. 275-278 in Proceedings of the 2nd International Workshop on Active and Programmable Grids Architectures and Components, APGAC05 as part of ICCS05 , Atlanta, GA, May 2005. DOI

  846. Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments Lecture Notes in Computer Science 3515, pp. 576-584 in Proceeding of the Wireless and Mobile Systems Workshop at ICCS 2005 , Atlanta, GA, May 2005. DOI

  847. Mehmet S. Aktas, Geoffrey Fox, Marlon Pierce Managing Dynamic Metadata as Context Istanbul International Computational Science and Engineering Conference (ICCSE2005) June 2005

  848. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Robert Granat A Scripting based Architecture for Management of Streams and Services in Real-time Grid Applications Proceedings of the IEEE/ACM Cluster Computing and Grid 2005 Conference (CCGrid 2005). Cardiff, UK May 2005 Pages 710-717. DOI

  849. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara HPSearch for Managing Distributed Services Work in Progress session at IEEE/ACM Cluster Computing and Grid 2005 Conference (CCGrid 2005 ). Cardiff, UK May 2005

  850. Tony Hey and Geoffrey Fox Grids and Web Services for e-Science Concurrency and Computation: Practice and Experience 17, 317-322, April 2005 DOI

  851. Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate Technical Report February 2005

  852. Mehmet Aktas, Galip Aydin, Andrea Donnellan, Geoffrey Fox, Robert Granat , Lisa Grant, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, Ahmet Sayar, and Terry Tullis iSERVO: Implementing the International Solid Earth Research Virtual Observatory by Integrating Computational Grid and Geographical Information Web Services Technical Report December 2004, Published in Special Issue of Pure and Applied Geophysics (PAGEOPH) for Beijing July 2004 ACES Meeting , Volume 163, Numbers 11-12 / December, 2006 DOI

  853. Wenjun Wu, Hasan Bulut, Ahmet Uyar, Geoffrey Fox Adapting H.323 Terminals in a Service-Oriented Collaboration System Special "Internet Media" issue of IEEE Internet Computing July-August 2005, Vol 9 number 4 pages 43-50 DOI

  854. Hongbin Liu, Shrideep Pallickara, Geoffrey Fox Performance of Web Services Security Proceedings of the 13th Annual 13th Mardi Gras Conference , February 3rd to 5th 2005, Baton Rouge, Louisiana

  855. Mehmet S. Aktas, Marlon Pierce, Geoffrey C. Fox, and David Leake A Web based Conversational Case-Based Recommender System for Ontology aided Metadata Discovery November 8, 2004. 5th IEEE/ACM International Workshop on Grid Computing (GRID 2004) DOI

  856. Minjun Wang, Geoffrey Fox and Marlon Pierce Grid-based Collaboration in Interactive Data Language Applications Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05) - Volume I pp. 335-341, April 4-6, 2005, Las Vegas DOI

  857. Shrideep Pallickara and Geoffrey Fox An Analysis of Notification Related Specifications for Web/Grid applications October 30 2004 and as a Short Paper in Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05), Volume II pages 762-763, April 4-6, 2005, Las Vegas DOI

  858. Shrideep Pallickara, Geoffrey Fox and Sangmi Lee Pallickara An Analysis of Reliable Delivery Specifications for Web Services in Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'05), Volume I pp. 360-365. April 4-6, 2005, Las Vegas DOI

  859. Wenjun Wu, Ahmet Uyar, Hasan Bulut, Sangyoon Oh, Geoffrey Fox Grid Service Architecture for Videoconferencing to appear as chapter in book "Grid Computational Methods" Edited by M.P. Bekakos, G.A. Gravvanis and H.R. Arabnia

  860. Geoffrey Fox, Shrideep Pallickara, and Marlon Pierce Building a Grid of Grids: Messaging Substrates and Information Management to appear as chapter in book "Grid Technologies: Emerging from Distributed Architectures to Virtual Organizations" Editors: M.P. Bekakos, G.A. Gravvanis and H.R. Arabnia.

  861. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System Technical Report January 2005 and to be published in IEEE International Conference on Pervasive Services 2005 ( ICPS'05),11-14 July 2005, Santorini, Greece

  862. Geoffrey Fox and Marlon Pierce Web Service Grids for iSERVO International Workshop on Geodynamics: Observation, Modeling and Computer Simulation University of Tokyo Japan October 14 2004

  863. Geoffrey Fox and Marlon Pierce SERVO Earthquake Science Grid as a summary of iSERVO technology October 2004 in January 2005 report High Performance Computing Requirements for the Computational Solid Earth Sciences edited by Ron Cohen and started at May 2004 workshop on Computational Geoinformatics

  864. Xiaohong Qiu, Shrideep Pallickara, and Ahmet Uyar Making SVG a Web Service in a Message-based MVC Architecture SVGOpen Conference 2004 Tokyo September 2004. Original Abstract

  865. Minjun Wang and Geoffrey Fox Design of a Collaborative System for Open Office, Proceedings of IASTED KSCE Conference Virgin Islands November 2004

  866. Geoffrey Fox, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, John Rundle, Andrea Donnellan, Jay Parker, Robert Granat, Greg Lyzenga, Dennis McLeod and Anne Chen Complexity Computational Environments (CCE) Architecture NASA Technical Report September 2004

  867. Malcolm Atkinson, David DeRoure, Alistair Dunlop, Geoffrey Fox, Peter Henderson, Tony Hey, Norman Paton, Steven Newhouse, Savas Parastatidis, Anne Trefethen and Paul Watson. Web Service Grids: An Evolutionary Approach UK e-Science Technical Report July 13 2004 published in a special issue of Concurrency and Computation: Practice and Experience 17, 377-389, 2005. DOI

  868. Geoffrey Fox Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, Robert L. Grossman, Yunhong Gu, David Hanley, Xinwei Hong, Indiana University and University of Illinois at Chicago High Performance Data Streaming in Service Architecture Technical Report July 2004

  869. Ahmet Uyar, Wenjun Wu, Geoffrey Fox Service-Oriented Architecture for Building a Scalable Videoconferencing System Technical Report June 2004

  870. Harshawardhan Gadgil, Jin-Yong Choi, Bernie Engel, Geoffrey Fox, Sunghoon Ko, Shrideep Pallickara, Marlon Pierce Management of Data Streams for a Real Time Flood Simulation Technical Report June 2004

  871. D. Gannon, J. Alameda, O. Chipara, M. Christie, V. Dukle, L. Fang, M. Farrellee, G. Kandaswamy, D. Kodeboyina, S. Krishnan, C. Moad, M. Pierce, B. Plale, A. Rossi, Y. Simmhan, A. Sarangi, A. Slominski, S. Shirasuna, T. Thomas Building Grid Portal Applications from a Web-Service Component Architecture Proceedings of the IEEE March 2005 Volume: 93, Issue: 3 On page(s): 551- 563 DOI

  872. Geoffrey Fox Grids of Grids of Simple Services for CISE Magazine July/August 2004

  873. Jungkee Kim and Geoffrey Fox A Hybrid Keyword Search across Peer-to-Peer Federated databases Advances in Databases and Information Systems (ADBIS) 2004 Budapest Hungary September 22-25 2004

  874. Minjun Wang, Geoffrey Fox and Shrideep Pallickara NEW TOOLS IN EDUCATION The 7th IASTED International Conference on COMPUTERS AND ADVANCED TECHNOLOGY IN EDUCATION ~CATE 2004~ August 16-18, 2004 Kauai, Hawaii, USA

  875. Galip Aydin, Marlon Pierce, Geoffrey Fox, Mehmet Aktas and Ahmet Sayar Implementing GIS Grid Services for the International Solid Earth Research Virtual Observatory Extended abstract for Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop , Beijing China, July 13 2004

  876. Andrea Donnellan, Geoffrey Fox, Robert Granat, Lisa Grant, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, and Terry Tullis iSERVO: Implementing the International Solid Earth Research Virtual Observatory Extended abstract for Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop , Beijing China, July 13 2004

  877. Sangmi Lee, Geoffrey Fox Wireless Reliable Messaging Protocol for Web Services (WS -WRM) Proceedings of IEEE 2nd International Conference on Web Services (ICWS 2004) pages 350-357, San Diego July 2004 DOI

  878. Xiaohong Qiu Building Desktop Application with Web Services in a Message-based MVC Paradigm IEEE 2nd International Conference on Web Services (ICWS 2004) pages 765-769, San Diego July 2004 DOI

  879. Shrideep Pallickara and Geoffrey Fox Efficient Matching Of Events in Distributed Middleware Systems Journal Of Digital Information Management. Volume 2, Issue 2. pp 79-87. June 2004.Special Issue of selected papers from the IEEE ITCC 2004 Track on Modern Grid and Web Systems.

  880. Minjun Wang, Geoffrey Fox and Shrideep Pallickara Demonstrations of Collaborative Web Services and Peer-to-Peer Grids Journal Of Digital Information Management. Volume 2, Issue 2. June 2004.Special Issue of selected papers from the IEEE ITCC 2004 Track on Modern Grid and Web Systems.

  881. Hasan Bulut, Wenjun Wu, Geoffrey Fox, Ahmet Uyar, Shrideep Pallickara, Harun Altay A Web Services Based Streaming Gateway for Heterogeneous A/V Collaboration IC2004, The 5th International Conference on Internet Computing, Las Vegas June 2004

  882. Sang Boem Lim, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce. Web Service Robust GridFTP The 2004 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA04), Las Vegas June 2004

  883. Hasan Bulut, Shrideep Pallickara and Geoffrey Fox Implementing a NTP-Based Time Service within a Distributed Brokering System ACM International Conference on the Principles and Practice of Programming in Java, June 16-18, Las Vegas, NV

  884. Andrea Donnellan, Jay Parker, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod Complexity Computational Environment: Data Assimilation SERVOGrid 2004 Earth Science Technology Conference June 22 - 24 2004 Palo Alto

  885. Andrea Donnellan, Jay Parker, Greg Lyzenga, Robert Granat, Geoffrey Fox, Marlon Pierce, John Rundle, Dennis McLeod, Lisa Grant, Terry Tullis The QuakeSim Project: Numerical Simulations for Active Tectonic Processes 2004 Earth Science Technology Conference June 22 - 24 Palo Alto

  886. Mehmet S. Aktas, Marlon Pierce, and Geoffrey C. Fox Designing Ontologies and Distributed Resource Discovery Services for an Earthquake Simulation Grid GGF-11 Global Grid Forum Semantic Grid Applications Workshop Hawaii June 10 2004

  887. John B. Rundle, Paul B. Rundle , Andrea Donnellan and Geoffrey Fox Gutenberg-Richter Statistics in Topologically Realistic System-Level Earthquake Stress-Evolution Simulations IUGG Hagiwara symposium on Monitoring and Modeling of Earthquake and Volcanic Processes for Prediction June 30 – July 11, 2003 in Sapporo, Japan; Earth Planets Space, Vol. 56 (No. 8), pp. 761-771, 2004

  888. Shrideep Pallickara and Geoffrey Fox A Scheme for Reliable Delivery of Events in Distributed Middleware Systems Proceedings of the IEEE International Conference on Autonomic Computing. ICAC'04 New York, NY. May 17-18 2004, pp. 328-329 DOI.

  889. Geoffrey Fox, Shrideep Pallickara and Savas Parastatidis Towards Flexible Messaging for SOAP Based Services Proceedings of the IEEE/ACM Supercomputing Conference SC04 November 2004. Pittsburgh, PA, page 8. DOI

  890. Geoffrey Fox and Shrideep Pallickara Deploying the NaradaBrokering Substrate in Aiding Efficient Web and Grid Service Interactions Invited paper for the Special Issue of the Proceedings of the IEEE on Grid Computing. Vol 93, No 3. pp 564-577. March 2005. DOI

  891. Geoffrey Fox The Rule of the Millisecond for CISE Magazine March/April 2004

  892. Minjun Wang, Geoffrey Fox and Shrideep Pallickara A Demonstration of Collaborative Web Services and Peer-to-Peer Grids Proceedings of IEEE ITCC2004 International Conference on Information Technology (Track on Methodologies, Technologies and Applications in Distributed and Grid Systems) Las Vegas April 5-7 2004

  893. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox An Efficient Scheme for Aggregation and Presentation of Network Performance in Distributed Brokering Systems to be published in Journal on Systemics, Cybernetics and Informatics 2004

  894. Xiaohong Qiu and Geoffrey Fox Building Desktop Application with Web Services in a Message-based MVC Paradigm Technical Report

  895. Marlon Pierce and Geoffrey Fox Scientific Applications as Web Services: A Simple Guide for CISE Magazine January/February 2004

  896. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Programming Support for High-Performance Grid-Enabled Applications Special issue on Parallel and Distributed Algorithms in Parallel Algorithms and Applications, Taylor and Francis, Volume 19, Number 2-3 / June-September, 2004 Pages: 175 - 193 DOI

  897. Mehmet A. Nacar, Marlon Pierce and Geoffrey C. Fox Developing a Secure Grid Computing Environment Shell Engine: Containers and Service Special issue on Grid computing in Journal of Neural Parallel and Scientific Computations (NPSC), Volume 12, pages 379-390, 2004

  898. Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Harun Altay Design and Implementation of a collaboration Web-services system Special issue on Grid computing in Journal of Neural Parallel and Scientific Computations (NPSC), Volume 12, pages 391-408 (2004).

  899. Summary of Community Grids Laboratory December 2003 or in PDF

  900. John B. Rundle, Paul B. Rundle, Andrea Donnellan and Geoffrey Fox Statistical Mechanics Approaches to the Modeling of Nonlinear Earthquake Physics conference proceedings of IUGG 03

  901. Geoffrey C. Fox, Wenjun Wu, Ahmet Uyar Hasan Bulut Design and Implementation of Audio/Video Collaboration System Based on Publish/subscribe Event Middleware Proceedings of CTS04 San Diego January 2004

  902. Shrideep Pallickara, Geoffrey Fox, Xi Rao, Ahmet Uyar and David Walker Performance of a possible Grid Messaging Infrastructure UK e-Science meeting on Grid Performance Edinburgh December 9 2002, Special Issue of Concurrency and Computation: Practice and Experience on Grid Performance. Concurrency and Computation: Practice and Experience, Vol. 17, No. 2-4. (February 2005), pp. 193-214. DOI or ACM Guide

  903. Amey Dharurkar, Shrideep Pallickara and Geoffrey Fox A Topology Viewer for Distributed Brokering Systems Proceedings of International Conference on Information Technology: Coding and Computing (ITCC'04) April 2004.Volume I pp 228-234. DOI

  904. Shrideep Pallickara NaradaBrokering and its Applications SC03 Handout

  905. Mary Thomas, Marlon Pierce, Tomasz Haupt Building Interoperable Portals with Web Services Technical Report of ET011 Project October 2003

  906. Bryan Carpenter, Geoffrey Fox, Han-Ku Lee and Sang Boem Lim. Applications of HPJava In 16th International Workshop on Languages and Compilers for Parallel Computing, October 2003. Volume 2958 of Lecture Notes in Computer Science, 2003,

  907. Ozgur Balsoy, Ying Jin, Galip Aydin, Marlon Pierce and Geoffrey Fox Automating Metadata Web Service Deployment for Problem Solving Environments Special Issue of Future Generation Computer Systems Vol. 21, No. 6. (June 2005), pp. 910-919. DOI

  908. Geoffrey Fox PLANNING A NEW GENERATION OF MULTIPARTICLE PHASE SHIFT ANALYSES IN PERIPHERAL REACTIONS Proceedings of Jefferson Laboratory Workshop on Gluonic Excitations Newport News May 16 2003

  909. Geoffrey Fox, Sang Lim, Shrideep Pallickara, Marlon Pierce Message-Based Cellular Peer-to-Peer Grids: Foundations for Secure Federation and Autonomic Services in PEER-TO-PEER COMPUTING AND INTERACTION WITH GRIDS -- Special issue of Future Generation Computer Systems Vol. 21, No. 3. (March 2005), pp. 401-415. DOI

  910. Geoffrey Fox, Marlon Pierce Implications of Grids, e-Science and CyberInfrastructure for the DoD High Performance Computing Modernization Program Technical Report September 7 2003

  911. Geoffrey Fox, Shrideep Pallickara, Marlon Pierce and David Walker Towards Dependable Grid and Web Services ACM Ubiquity Volume 4, Issue 25. August, 2003. Towards dependable grid and web services Geoffrey Fox , Shrideep Pallickara , Marlon Pierce , David Walker Ubiquity, 2003 frames are not supported

  912. Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, and Han-ku Lee, A Device Level Communication Library for the HPJava Programming Language in proceedings of the IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2003), November 3 to November 5, 2003, Marina Del Rey, CA. USA

  913. Geoffrey Fox Messaging Systems: Parallel Computing the Internet and the Grid EuroPVM/MPI 2003 Invited Talk September 30 2003. Published in Lecture Notes in Computer Science Publisher: Springer Berlin / Heidelberg ISSN: 0302-9743 Subject: Computer Science Volume 2840 / 2003 Title: Recent Advances in Parallel Virtual Machine and Message Passing Interface: 10th European PVM/MPI User's Group Meeting, Venice, Italy, September 29 - October 2, 2003, Proceedings Editors: Jack Dongarra, Domenico Laforenza, Salvatore Orlando ISBN: 3-540-20149-1, Chapter: pp. 1 - 9 DOI

  914. Geoffrey Fox, David Walker e-Science Gap Analysis June 30 2003 with 390 References Extracted

  915. Geoffrey Fox, David Walker Appendix to e-Science Gap Analysis June 30 2003

  916. Choonhan Youn, Marlon E. Pierce, and Geoffrey C. Fox Building Problem Solving Environments with Application Web Service Toolkits Special Issue of Future Generation Computer Systems Vol. 21, No. 6. (June 2005), pp. 856-867 DOI

  917. Geoffrey Fox Data and Metadata on the Semantic Grid for CISE Magazine September/October 2003

  918. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Efficient Compilation and Performance for HPC 7th World Multiconference on Systemics, Cybernetics and Informatics SCI 2003 July 27-30 2003 Orlando, Florida

  919. Galip Aydin, Harun Altay, Mehmet S. Aktas, M. Necati Aysan, Geoffrey Fox, Cevat Ikibas, Jungkee Kim, Ali Kaplan, Ahmet E. Topcu, Marlon Pierce, Beytullah Yildiz, Ozgur Balsoy Online Knowledge Center Tools for Metadata Management DoD HPCMP Users Group Meeting Seattle June 9-13 2003

  920. Sangyoon Oh, Geoffrey C. Fox , Sunghoon Ko GMSME: An Architecture for Heterogeneous Collaboration with Mobile Devices The Fifth IEEE International Conference on Mobile and Wireless Communications Networks (MWCN 2003) Singapore in September / October, 2003.

  921. Wenjun Wu, Hasan Bulut, Ahmet Uyar, Geoffrey C. Fox A WEB-SERVICES BASED CONFERENCE CONTROL FRAMEWORK FOR HETEROGENOUS A/V COLLABORATION 7th IASTED International Conference on INTERNET AND MULTIMEDIA SYSTEMS AND APPLICATIONS ~IMSA 2003~ August 13-15, 2003 Honolulu, Hawaii, USA

  922. Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox An Integrated Videoconferencing System for Heterogeneous Multimedia Collaboration 7th IASTED International Conference on INTERNET AND MULTIMEDIA SYSTEMS AND APPLICATIONS ~IMSA 2003~ August 13-15, 2003 Honolulu, Hawaii, USA

  923. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, Hasan Bulut, Shrideep Pallickara A Web Services Framework for Collaboration and Videoconferencing or as submitted WACE 2003 Workshop on Advanced Collaborative Environments Seattle June 22 2003.

  924. Shrideep Pallickara, Marlon Pierce, Geoffrey Fox, Yan Yan, Yi Huang A Security Framework for Distributed Brokering Systems or here

  925. Shrideep Pallickara and Geoffrey Fox Efficient Support for Sophisticated Interactions between Entities in Distributed Brokering Systems or Lowering the Cost of Communication ACM Ubiquity Volume 4 Issue 16. June 2003. DOI Lowering the cost of computation Shrideep Pallickara , Geoffrey Fox Ubiquity, 2003

  926. Geoffrey Fox, Sunghoon Ko, Kangseok Kim, Sangmi Lee, and Sangyoon Oh Universal Accessible Collaboration Frameworks for Ubiquitous Computing Environments ICUC2003 in Seoul Korea 20-22 Oct

  927. Geoffrey Fox Integration of Computing and Information on Grids in CISE Magazine July/August 2003 DOI

  928. Mehmet Nacar, Marlon Pierce and Geoffrey Fox Designing a Grid Computing Environment Shell Engine in Proceedings of the 2003 International Conference on Internet Computing, Las Vegas June 2003

  929. Marlon Pierce and Geoffrey Fox Federated Grids and their Security -- a white paper

  930. Shrideep Pallickara and Geoffrey Fox On the Matching of Events in Distributed Brokering Systems Proceedings of IEEE ITCC Conference on Information Technology. April 2004. Volume II pp 68-76.

  931. Ahmet Uyar, Shrideep Pallickara and Geoffrey Fox Audio Video Conferencing in Distributed Brokering Systems in Proceedings of the 2003 International Conference on Communications in Computing, Las Vegas June 2003

  932. Shrideep Pallickara and Geoffrey Fox NaradaBrokering: A Distributed Middleware Framework and Architecture for Enabling Durable Peer-to-Peer Grids in Proceedings of ACM/IFIP/USENIX International Middleware Conference Middleware-2003, Rio Janeiro, Brazil June 2003, Springer Lecture Notes in Computer Science Volume 2672/2003 pages 998-999 DOI

  933. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Internet Collaboration using the W3C Document Object Model in Proceedings of the 2003 International Conference on Internet Computing, Las Vegas June 2003

  934. Wenjun Wu, Ahmet Uyar, Hasan Bulut, Geoffrey Fox Integration of SIP VoIP and Messaging with the AccessGrid and H.323 Systems , in Proceedings of 1st International Conference on Web Services Las Vegas June 2003

  935. Choonhan Youn, Marlon Pierce, and Geoffrey Fox Building Problem Solving Environments with Application Web Service Toolkits ICCS03 Australia June 2003

  936. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Collaborative SVG as a Web service updated to Longer Word Version or in official form in Proceedings of SVG Open Conference Vancouver July 2003

  937. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, Hasan Bulut, Shrideep Pallickara Global Multimedia Collaboration System in Proceedings of the 1st International Workshop on Middleware for Grid Computing co-located with Middleware 2003 on Tuesday, June 17, 2003 Rio de Janeiro, Brazil

  938. Ozgur Balsoy, Ying Jin, Galip Aydin, Marlon Pierce, and Geoffrey Fox Automating Metadata Web Service Deployment for Problem Solving Environments ICCS03 Melbourne Australia June 2-4 2003

  939. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim HPJava: Towards Programming Support for High-Performance Grid-Enabled Applications in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  940. Bryan Carpenter and Geoffrey Fox HPJava: A Data Parallel Programming Alternative for CISE Magazine May/June 2003

  941. Choonhan Youn, Marlon Pierce and Geoffrey Fox Developing Secure Web Services for Computational Portals in Proceeedings of 2003 International Conference on Security and Management (SAM'03: June 23-26, 2003, Las Vegas, Nevada, USA

  942. Ali Kaplan, Ahmet E. Topcu, Marlon Pierce, and Geoffrey Fox Access Control System Using Web Services for XML Messaging Systems in Proceedings of Information Knowledge Engineering (IKE 2003) Las Vegas June 2003

  943. Sangmi Lee, Sunghoon Ko, Geoffrey Fox, Adapting Content for Mobile Devices in Heterogeneous Collaboration Environments in Proceedings of the 2003 International Conference on Wireless Networks Las Vegas June 2003

  944. Sangmi Lee, Sunghoon Ko, Geoffrey Fox, Kangseok Kim, Sangyoon Oh A Web Service Approach to Universal Accessibility in Collaboration Services in Proceedings of 1st International Conference on Web Services Las Vegas June 2003

  945. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox A Portal Based Approach to Viewing Aggregated Network Performance Data in Distributed Brokering Systems in Proceedings of the 2003 International Conference on Internet Computing Las Vegas June 2003

  946. Marlon Pierce,Choonhan Youn, and Geoffrey Fox Interacting Data Services for Distributed Earthquake Modeling ACES Workshop at ICCS June 2003 Australia

  947. Yan Yan, Yi Huang, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara, Marlon Pierce and Ahmet Topcu Implementing a Prototype of the Security Framework for Distributed Brokering Systems in Proceeedings of 2003 International Conference on Security and Management (SAM'03: June 23-26, 2003, Las Vegas, Nevada, USA

  948. Shrideep Pallickara, Geoffrey Fox and Marlon Pierce Incorporating an XML Matching Engine in Distributed Brokering Systems in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  949. Shrideep Pallickara, Geoffrey Fox, John Yin, Gurhan Gunduz, Hongbin Liu, Ahmet Uyar, Mustafa Varank A Transport Framework for Distributed Brokering Systems in Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications. (PDPTA'03) Las Vegas June 2003

  950. Gurhan Gunduz, Shrideep Pallickara and Geoffrey Fox A Framework for Aggregating Network Performance in Distributed Brokering Systems Proceedings of the 9th International Conference on Computer, Communication and Control Technologies. CCCT '03 July-August 2003.Orlando Florida. This paper was selected as the best paper presented in the session: Computing / Information Systems and Technologies.

  951. Andrea Donnellan, Geoffrey Fox, John Rundle, Dennis McLeod, Terry Tullis, Lisa Grant Numerical Simulations for Active Tectonic Processes: Increasing Interoperability and Performance extended abstract for conference in Japan March 2003

  952. Geoffrey Fox and Marlon Pierce Grid Computing Environments Shells proposed GGF Information Document

  953. G.Fox, D. Gannon, M. Pierce, M. Thomas Overview of Grid Computing Environments proposed GGF Information Document

  954. Xiaohong Qiu, Bryan Carpenter and Geoffrey C. Fox Collaborative Web services and the W3C Document Object Model technical report

  955. Geoffrey Fox Grid Computing Environments or in word for CISE Magazine March/April 2003

  956. Geoffrey Fox, Hasan Bulut, Kangseok Kim, Sung-Hoon Ko, Sangmi Lee, Sangyoon Oh, Shrideep Pallickara, Xiaohong Qiu, Ahmet Uyar, Minjun Wang, Wenjun Wu Collaborative Web Services and Peer-to-Peer Grids or in sxw presented at 2003 Collaborative Technologies Symposium ( CTS'03)

  957. Geoffrey Fox Grande Applications and Java or in sxw for CISE Magazine January/February 2003

  958. Geoffrey Fox, Sangmi Lee, Sunghoon Ko, Kangseok Kim, Sangyoon Oh, CAROUSEL Web service: Universal Accessible Web service Architecture for Collaborative Application November 2002

  959. Geoffrey Fox Multiparticle phase shift analysis in peripheral production experiments: Lessons from the Past Proceedings of Partial Wave Analysis Workshop, CMU June 2-4 2002 at http://www.curtismeyer.com/pwa_work/ International Journal of Modern Physics A, 18, 345-354, 2003

  960. Geoffrey Fox Message Passing: From Parallel Computing to the Grid for CISE Magazine September/October 2002

  961. Geoffrey Fox e-Science for CISE Magazine July/August 2002

  962. Geoffrey Fox, Dennis Gannon, Mary Thomas with A Summary of Grid Computing Environments July 2002 as a summary of a special issue of Concurrency and Computation: Practice and Experience with Home Page

  963. Jungkee Kim, Ozgur Balsoy, Marlon Pierce, and Geoffrey Fox Design of a Hybrid Search in the Online Knowledge Center is here . IASTED International Conference on Information and Knowledge Sharing (IKS 2002) November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  964. Galip Aydin, Ali Kaplan, Ahmet E. Topcu, Beytullah Yildiz, Ozgur Balsoy, Marlon Pierce, and Geoffrey Fox An XML Based System for Dynamic Message Content Creation, Delivery, and Control is here . IASTED International Conference on Information and Knowledge Sharing (IKS 2002) November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  965. Marlon Pierce, Choonhan Youn, Geoffrey Fox Application Web Services is here

  966. Geoffrey Fox, Dennis Gannon, Sung-Hoon Ko, Sangmi Lee, Shrideep Pallickara, Marlon Pierce, Xiaohong Qiu, Xi Rao, Ahmet Uyar, Minjun Wang, Wenjun Wu Book chapter on Peer-to-Peer Grids

  967. Hasan Bulut, Geoffrey Fox, Shrideep Pallickara,Ahmet Uyar and Wenjun Wu, Integration of NaradaBrokering and Audio/Video Conferencing as a Web Service is here . IASTED International Conference on Communications, Internet, and Information Technology, November 18 to November 20, 2002, in St.Thomas, US Virgin Islands.

  968. Hasan Bulut, Geoffrey Fox, Dennis Gannon, Kangseok Kim, Sung-Hoon Ko, Sangmi Lee, Sangyoon Oh, Xi Rao, Shrideep Pallickara, Quinlin Pei, Marlon Pierce, Aleksander Slominski, Ahmet Uyar, Wenjun Wu, Choonhan Youn An Architecture for e-Science and its Implications to be presented at 2002 International Symposium on Performance Evaluation of Computer and Telecommunication Systems (SPECTS 2002) July 17 2002

  969. Marlon Pierce, Choonhan Youn, Ozgur Balsoy, Geoffrey Fox, Steve Mock, and Kurt Mueller Interoperable Web Services for Computational Portals . SC02 November 2002

  970. Steve Mock, Kurt Mueller, Marlon Pierce, Choonhan Youn, Geoffrey Fox, and Mary Thomas A Batch Script Generator Web Service for Computational Portals is here or as published

  971. Geoffrey Fox, Wenjun Wu, Ahmet Uyar, and Hasan Bulut A Web Services Framework for Collaboration and Audio/Videoconferencing is here updated here

  972. Ozgur Balsoy, Mehmet S. Aktas, Galip Aydin, Mehmet N. Aysan, Cevat Ikibas, Ali Kaplan, Jungkee Kim, Marlon Pierce, Ahmet Topcu, Beytullah Yildiz, and Geoffrey Fox The Online Knowledge Center: Building a Component Based Portal is here . Proceedings of the International Conference on Information and Knowledge Engineering, 2002. Updated here

  973. Mehmet Aktas, Galip Aydin, Mehmet Necati Aysan, Ozgur Balsoy, Geoffrey Fox, Cevat Ikibas, Ali Kaplan, Jungkee Kim, Marlon Pierce, Ahmet Topcu, and Beytullah Yildiz Design Features and Technology Evaluations for the PET Online Knowledge Center is here

  974. Geoffrey Fox, Shrideep Pallickara and Xi Rao Scaleable Event Infrastructure for Peer to Peer Grids is here , JGI '02: Proceedings of the 2002 joint ACM-ISCOPE conference on Java Grande page 66-75.

  975. Geoffrey Fox and Shrideep Pallickara The Narada Event Brokering System: Overview and Extensions is here Proceedings of the 2002 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'02). CSREA Press (2002) edited by H.R. Arabnia Volume I pages 353-359

  976. Geoffrey Fox and Shrideep Pallickara JMS Compliance in the Narada Event Brokering System is here Proceedings of the 2002 International Conference on Internet Computing (IC-02). Volume 2 pp 391-397.

  977. Geoffrey Fox and Shrideep Pallickara Support for Peer-to-Peer Interactions in Web Brokering Systems is here ACM Ubiquity. Volume3 Issue 15. May 2002 Peer-to-peer interactions in web brokering systems Geoffrey Fox , Shrideep Pallickara Ubiquity, 2002

  978. SDSC (Steve Mock, Kurt Mueller), Indiana (Marlon Pierce, Choonhan Youn, Geoffrey Fox) and Texas (Mary Thomas) paper on A Batch Script Generator Web Service for Computational Portals is here

  979. Geoffrey Fox, Sung-Hoon Ko, Kangseok Kim, Sangyoon Oh, Sangmi Lee on Integration of Hand-Held Devices into Collaborative Environments is here updated as PDA_IC2002.pdf

  980. Han-Ku Lee, Bryan Carpenter, Geoffrey Fox, Sang Boem Lim on Benchmarking HPJava: Prospects for Performance is here : submitted to Sixth Workshop on "Languages, Compilers, and Run-time Systems for Scalable Computers" (LCR 02)

  981. Geoffrey Fox, XML and the Importance of being an Object?, for CISE Magazine May/June 2002 is here

  982. Fox's Paper on From Computational Science to Internetics: Integration of Science with Computer Science, in Ronald F. Boisvert and Elias Houstis (eds.), Computational Science, Mathematics and Software, Purdue University Press, West Lafayette, Indiana, , ISBN 1-55753-250-8. Pages 217-236, July 2002.

  983. Technical Report on PDA Access to Garnet Collaboration System January 24 2002

  984. Marlon Pierce, Choonhan Youn, Geoffrey Fox, The Gateway Computational Portal: Developing Web Services for High Performance Computing , ICCS2002 Conference April 2002

  985. Paper on Community Grids Architecture prepared on January 21 2002 for ICCS2002 Conference April 2002

  986. Dennis Gannon's Talk on Programming the Grid: Distributed Software Components, P2P and Grid Web Services for Scientific Applications, GRID 2001, 2nd International Workshop on Grid Computing, Denver November 12 2001.

  987. Shrideep Pallickara and Geoffrey Fox paper on A Scalable Durable Grid Event Service.

  988. Shrideep Pallickara and Geoffrey Fox paper on An Approach to High Performance Distributed Web Brokering ACM Ubiquity Volume2 Issue 38. November 2001 Optimizing bandwidth Geoffrey Fox , Shrideep Pallickara Ubiquity, 2001

  989. Shrideep Pallickara and Geoffrey Fox paper on An Event Service to Support Grid Computational Environments, Concurrency and Computation: Practice and Experience. Special Issue on Grid Computing Environments. Volume 14(13-15) pp 1097-1129.

  990. Marlon. E. Pierce, Choonhan Youn, Geoffrey C. Fox paper on The Gateway Computational Web Portal to be published in Concurrency and Computation: Practice and Experience in Grid Computing environments Special Issue 2002;

  991. Community Grids paper on Grid Services for Earthquake Science, to be published in Concurrency and Computation: Practice and Experience in ACES Special Issue, 2002.

  992. Geoffrey Fox and Dennis Gannon, Computational Grids for CISE Magazine July/August 2001 is here

  993. Geoffrey Fox, Peer-to-Peer Networks, for CISE Magazine May/June 2001 is here

  994. Geoffrey Fox, Gurhan Gunduz and Ahmet Uyar Report on Audio-Video Conferencing Technology May 2001

  995. Geoffrey Fox report on Computational Science and Information Technology: Distance Education and Training May 2001

  996. Geoffrey Fox report on Ubiquitous Access for Computational Science and Education May 2001

  997. Geoffrey Fox report on Architecture and Implementation of a Collaborative Computing and Education Portal May 2001

  998. Fox, G.C., Ken Hurst, Andrea Donnellan, and Jay Parker with a shorter paper on An object web-based approach to Earthquake Simulations, a APEC Cooperation for Earthquake Simulation - 2nd ACES Workshop Proceedings: October 15-20 2000 Hakone and Tokyo Japan, edited by Mitsuhiro Matsu'ura, Kengo Nakajima and Peter Mora and published by GOPRINT, Brisbane in 2001, pp 495-502.

  999. Fox, G.C., Ken Hurst, Andrea Donnellan, and Jay Parker, with a long paper on Introducing a New Paradigm for Computational Earth Science - A web-object-based approach to Earthquake Simulations, a chapter in AGU monograph on "GeoComplexity and the Physics of Earthquakes" edited by John Rundle, Donald Turcotte and William Klein and published by AGU in 2000, pp 219-245

  1000. Geoffrey Fox, Introduction to Web Computing, for CISE Magazine March/April 2001 is here

  1001. Xiaohong Qiu, Flash Tutorial October 2000 in Word or HTML

  1002. Fox's Paper on Internetics: Technologies, Applications and Academic Fields Invited Chapter in Book :Feynman and Computation, edited by A.J.G. Hey, Perseus Books (1999).

  1003. Review of Collaborative Tools as of May 9 2001

  1004. Older References from 2001 and earlier

  1005. Object serialization for marshalling data in a Java interface to MPI Bryan Carpenter , Geoffrey Fox , Sung Hoon Ko , Sang Lim JAVA '99 Proceedings of the ACM 1999 conference on Java Grande, 1999

  1006. The gateway system: uniform Web based access to remote resources Geoffrey Fox , Tomasz Haupt , Erol Akarsu , Alexey Kalinichenko , Kang-Seok Kim , Praveen Sheethalnath , Choon-Han Youn JAVA '99 Proceedings of the ACM 1999 conference on Java Grande, 1999

  1007. Distributed information management in the National HPCC Software Exchange Shirley Browne , Jack Dongarra , Geoffrey C. Fox , Ken Hawick , Ken Kennedy , Rick Stevens , Robert Olson , Tom Rowan Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing (CDROM), 1995

  1008. The living textbook and the K–12 classroom of the future Kim Mills , Geoffrey Fox , Paul Coddington , Barbara Mihalas , Marek Podgorny , Barbara Shelly , Steven Bossert Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing (CDROM), 1995

  1009. A parallel Gauss-Seidel algorithm for sparse power system matrices D. P. Koester , S. Ranka , G. C. Fox Supercomputing '94 Proceedings of the 1994 ACM/IEEE conference on Supercomputing, 1994

  1010. Interpreting the performance of HPF/Fortran 90D Manish Parashar , Salim Hariri , Tomasz Haupt , Geoffrey C. Fox Supercomputing '94 Proceedings of the 1994 ACM/IEEE conference on Supercomputing, 1994

  1011. Fortran 90D/HPF compiler for distributed memory MIMD computers: design, implementation, and performance results Z. Bozkus , A. Choudhary , G. Fox , T. Haupt , S. Ranka Supercomputing '93 Proceedings of the 1993 ACM/IEEE conference on Supercomputing, 1993

  1012. An interactive remote visualization environment for an electromagnetic scattering simulation on high performance computing system G. Cheng , Y. Lu , G. Fox , K. Mills , T. Haupt Supercomputing '93 Proceedings of the 1993 ACM/IEEE conference on Supercomputing, 1993

  1013. Graph contraction for physical optimization methods: a quality-cost tradeoff for mapping data on parallel computers N. Mansour , R. Ponnusamy , A. Choudhary , G. C. Fox ICS '93 Proceedings of the 7th international conference on Supercomputing, 1993

  1014. Unified compilation of Fortran 77D and 90D Alok Choudhary , Geoffrey Fox , Seema Hiranandani , Ken Kennedy , Charles Koelbel , Sanjay Ranka , Chau-Wen Tseng ACM Letters on Programming Languages and Systems (LOPLAS), 1993

  1015. A static performance estimator to guide data partitioning decisions Vasanth Balasundaram , Geoffrey Fox , Ken Kennedy , Ulrich Kremer PPOPP '91 Proceedings of the third ACM SIGPLAN symposium on Principles and practice of parallel programming, 1991

  1016. Practical parallel supercomputing: examples from chemistry and physics G. C. Fox , P. Hipes , J. Salmon Supercomputing '89 Proceedings of the 1989 ACM/IEEE conference on Supercomputing, 1989

  1017. A universal concurrent algorithm for plasma particle-in-cell simulation codes P. C. Liewer , V. K. Decyk , J. M. Dawson , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1018. What have we learnt from using real parallel machines to solve real problems? G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1019. LU decomposition of banded matrices and the solution of linear systems on hypercubes D. W. Walker , T. Aldcroft , A. Cisneros , G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1020. Use of the hypercube for symbolic quantum chromodynamics A. Kolawa , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1021. The Flux-corrected transport algorithm on the NCUBE hypercube D. W. Walker , G. C. Fox , G. R. Montry C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1022. Piriform (Olfactory) cortex model on the hypercube J. M. Bower , M. E. Nelson , M. A. Wilson , G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1023. The prime factor non-binary discrete Fourier transform and use of Crystal_Router as a general purpose communication routine G. Aloisio , N. Veneziani , J. S. Kim , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1024. Optimal matrix algorithms on homogeneous hypercubes G. C. Fox , W. Furmanski , D. W. Walker C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2, 1989

  1025. PC-CUBE, a personal computer based hypercube A. Ho , G. C. Fox , D. W. Walker , S. Snyder , D. Chang , S. Chen , M. Breaden , T. Cole C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1026. Hypercube algorithms for neural network simulation: the Crystal_Accumulator and the Crystal Router G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1027. Problems and approaches for a Teraflop processor A. H. Frey , G. C. Fox C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1028. Optimal communication algorithms for regular decompositions on the hypercube G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1029. A string theory for time dependent complex systems and its application to automatic decomposition G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1030. Load balancing loosely synchronous problems with a neural network G. C. Fox , W. Furmanski C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

  1031. MAC-CUBE, the Macintosh-based hypercube A. Ho , G. C. Fox , D. W. Walker , M. Breaden , S. Chen , A. Knutson , S. Kuwamoto , T. Cole C 3 P Proceedings of the third conference on Hypercube concurrent computers and applications: Architecture, software, computer systems, and general issues - Volume 1, 1988

Theses by Community Grids Laboratory and Digital Science Center Students

2.4 - Links

Publications

This page includes the links to the papers and presentations.

Publications

Upload of new documents

  1. The document archive is located on rivanna. For papers they need to be uploaded to

    • /project/bii_dsc/www/infomall/publications

    For presentations, they need to be uploaded to

    • /project/bii_dsc/www/infomall/presentations

  2. After the upload the paper needs to be added to google drive paper list at A presentation need to be added to google drive presentation list

  3. After the papers have been uploaded, Gregor von Laszewski will update the html page that si generated while downloading the paper and html pages as html files from google. The resulting html page needs to be renamed to index.html and uploaded into the directory on rivanna that hod the presentation and publication directories.

Deprecated

2.5 - Presentations

Presentations

Digital Science Center Presentations

  1. Pulasthi Supun Wickramasinghe “ROLE OF HIGH-PERFORMANCE COMPUTING IN DEEP LEARNING” Indiana University Ph.D. Thesis Dissertation Defense Presentation, June 3, 2021
  2. Vibhatha Lakmal Abeykoon, “TOWARDS DATA ANALYTICS-AWARE HIGH PERFORMANCE DATA ENGINEERING AND BENCHMARKING”, Indiana University Ph.D. Thesis Dissertation Defense Presentation, June 2, 2021
  3. Gregor von Laszewsk, “Cloudmesh Microservices for Making Analytics as Services”, NIST presentation January 2021
  4. Vibhatha Abeykoon, “AI and Systems” Indiana University Ph.D. Qualifying Exam January 2, 2020
  5. Geoffrey Fox, “Big Data Systems and HPC”, The IEEE DSS-2020 Virtual Conference 16 December 2020 Fiji with Video(zoom)
  6. Niranda Perera. “CYLON: A Fast, Scalable, Universal Approach For Distributed Data Aggregations”, International Workshop on Big Data Reduction held with 2020 IEEE International Conference on Big Data Atlanta, GA December 10, 2020 with Video
  7. Geoffrey Fox, “Benchmarks Big Data and HPC”, with a Presentation at The Fourth IEEE International Workshop on Benchmarking, Performance Tuning and Optimization for Big Data Applications (BPOD 2020) at IEEE Big Data 2020 Workshops Atlanta December 10 2020
  8. Geoffrey Fox, Deep Learning for Time Series illustrated by COVID-19 Infection studies nanoBIO seminar December 8 2020
  9. Geoffrey Fox, Tony Hey and Jeyan Thiyagalingam, “MLPerf Science Data Working Group” recorded October 6 2020 for MLPerf SC20 Birds of a Feather on November 18, 2020 with video and Powerpoint
  10. Vibhatha Abeykoon, “Data Engineering for HPC with Python”, PyHPC workshop at SC20 November 13, 2020 with video
  11. Geoffrey Fox, “Studying Time Series with Deep Learning” November 13 E534 Class and video
  12. Geoffrey Fox, “MLCommons and Science Data WG”, MLPerf Science Data Working Group November 11 2020
  13. Geoffrey Fox “Recent Trends and Challenges in Communications, Computing, Cybersecurity and Informatics”, Panel Presentation at CCCI 2020 Virtual Conference, 2020 INTERNATIONAL CONFERENCE ON COMMUNICATIONS, COMPUTING, CYBERSECURITY, AND INFORMATICS, Sharjah, UAE November 5 2020
  14. Geoffrey Fox “Benchmarks and Data Engineering”, Presentation at CCCI 2020 Virtual Conference, 2020 INTERNATIONAL CONFERENCE ON COMMUNICATIONS, COMPUTING, CYBERSECURITY, AND INFORMATICS, Sharjah, UAE November 3 2020
  15. Geoffrey Fox, Tony Hey and Jeyan Thiyagalingam, “Benchmarking Science Data and Technology supporting Benchmarking”, 2020 BenchCouncil International Symposium on Evaluation, Simulation, and Test (ESTest 20), Qingdao, Shandong, China, November 1, 2020
  16. Chathura Widanage, Niranda Perera, Vibhatha Abeykoon, Supun Kamburugamuve, Thejaka Kanewala, Hasara Maithree, Pulasthi Wickramasinghe, Ahmet Uyar, Gurhan Gunduz and Geoffrey Fox (presenter), “High Performance Data Engineering Everywhere”, 2020 IEEE International Conference on Smart Data Services (SMDS 2020), Virtual Beijing. October 21 (evening Eastern time) 2020 with video
  17. Geoffrey Fox, “Advances in High Performance Computing and Deep Learning: Data Engineering and Data Science”, Basarim. High Performance Computing virtual Conference , Ankara Turkey, October 8 2020
  18. Supun Kamburugamuve and Niranda Perera, “CYLON Data Engineering Everywhere”, presentation at APACHECON September 28-October 2 2020
  19. Geoffrey Fox, Tony Hey and Jeyan Thiyagalingam,"MLPerf Science Data WG", MLPerf Science Data Working Group September 23 2020
  20. Geoffrey Fox, “Hybrid Transformer-LSTM network for Science Time Series”, Presentation at GPCE Global Pervasive Computational Epidemiology Quarterly Meeting, September 22, 2020
  21. Geoffrey Fox, “Big Data Benchmarking and Surrogates”, Virtual Presentation at RENCI Big Data Hub September 4, 2020
  22. Geoffrey Fox, “Big Data Science Benchmarks as Exemplars of Best Practice” presentation as part of panel “Bridging Methods to Applications in Data Science”, BioKDD San Diego Virtual meeting August 27 2020
  23. Geoffrey Fox, “Advancing Science with Deep Learning, HPC, Data Benchmarks and Data Engineering” Europar Conference August 27, 2020 with presentation of Achievement Award
  24. Geoffrey Fox, “Deep Learning for Biomedical and Science Time Series”, with video , BioKDD San Diego Virtual meeting August 24 2020
  25. Thomas Sterling, Prateek Sharma, Judy Qiu, Geoffrey Fox, “High Performance and Cloud Computing”, Indiana University School of Informatics, Computing and Engineering, August 12, 2020 with video and Powerpoint
  26. Geoffrey Fox, “Comments on Machine Learning in Health and Medicine”, nanoBIO@IU Florida Georgia LSAMP workshop, August 11 2020
  27. Geoffrey Fox,"Big Data and Technical Computing", nanoBIO@IU Florida Georgia LSAMP workshop, August 10 2020
  28. Geoffrey Fox, “Deep Learning for Time Series and Science Data in MLPerf” Indiana University Remote presentation June 16 2020.
  29. Geoffrey Fox, HPBD&IS 2020, International Conference on High Performance Big Data and Intelligent Systems, Address by the General Chair May 22-23 2020
  30. Geoffrey Fox, “High-Performance Computing: From Deep Learning to Data Engineering”, ScaDL 2020 Scalable Deep Learning over Parallel And Distributed Infrastructures online workshop May 22, 2020.
  31. Geoffrey Fox “Time Series Research in DSC Digital Science Center”, Brainstorming, 24 April 2020
  32. Judy Qiu and Geoffrey Fox, “Research at Indiana University in DSC Digital Science Center”, Global Pervasive Computational Epidemiology Expedition kick-off meeting April 23,2020
  33. Geoffrey Fox “Research in DSC Digital Science Center”, Remote Presentation to Roche, 17 April 2020
  34. Geoffrey Fox, “Issues at the intersection of AI, Streaming, HPC, Data-centers and the Edge”, at NITRD Middleware and Grid Interagency Coordination Team (MAGIC) virtual meeting April 1, 2020. Google slides
  35. Geoffrey Fox, “Opportunities for Accelerating Scientific Discovery: Realizing the Potential of Advanced and Automated Workflows: Remarks on Status and Trajectory of Supporting Tools and Systems”, March 16, 2020 Virtual meeting for National Academies workshop
  36. Geoffrey Fox, “Benchmarking Science: Datasets and Exascale Infrastructure”, Invited talk March 4 2020 at Benchmarking Machine Learning Workloads on Emerging Hardware workshop In MLSys Third Conference on Machine Learning and Systems Austin TX March 2-4, 2020
  37. CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science
    PI: G. Fox, Co-PIs: Madhav Marathe, Shantenu Jha, Judy Qiu, Fusheng Wang
    Institutions: Arizona State, Indiana (lead), Kansas, Rutgers, Stony Brook, Virginia, and Utah. Poster and PDF
  38. Geoffrey Fox: “ML for CI and CI for ML”, NSF PI Meeting, Seattle, Feb 20 2020
  39. Geoffrey Fox, JCS Kadupitiya and Vikram Jadhao, “Deep Learning Enhanced Simulation”, AIRES Workshop, Oak Ridge National Laboratory, 23 January 2020
  40. Geoffrey Fox, Overview of nanoBIO Project, January 21 2020
  1. Geoffrey Fox, Judy Qiu, Shantenu Jha,"HPC, Big Data, and Machine Learning Convergence", Presentation at Oak Ridge National Laboratory, January 7 2020
  2. Xinyuan Huang, Geoffrey C. Fox, Sergey Serebryakov, Ankur Mohan, Pawel Morkisz, Debojyoti Dutta, “Benchmarking Deep Learning for Time Series: Challenges and Directions”, presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019
  3. Vibhatha Abeykoon, Supun Kamburugamuve, Kannan Govendrarajan, Pulasthi Wickramasinghe, Chathura Widanage, Niranda Perera, Ahmet Uyar, Gurhan Gunduz, Selahattin Akkas and Gregor Von Laszewski, " Streaming Machine Learning Algorithms with Big Data Systems", presented at Stream-ML workshop at IEEE Big Data Conference , Los Angeles CA December 10, 2019
  4. Geoffrey Fox, Judy Qiu, Shantenu Jha, “HPC, Big Data, and Machine Learning Convergence”, with longer version , PDCAT Conference Gold Coast, Australia, December 7, 2019
  5. Geoffrey Fox, “Parallel Computing: from Digital Twins to Grids to Deep Learning and Back”, November 20, 2019
    SC19, ACM - IEEE CS Ken Kennedy Award Presentation, SC19 Denver, Colorado, USA. Award Flyer . Award Presentation picture1 and picture2 November 19,2019. YouTube recording
  6. Geoffrey Fox, Shantenu Jha, “BDEC Perspectives on AI Benchmarking”, at AIBench: Toward a Comprehensive AI Benchmark Suite for HPC, Datacenter, Edge, and IoT , a BOF at SC19 , Denver, Colorado, USA
  7. Vibhatha Abeykoon, Zhengchun Liu, Rajkumar Kettimuthu, Geoffrey Fox and Ian Foster, “Scientific Image Restoration Anywhere”, Google Slides, 1st Annual Workshop on Large-Scale Experiment-in-the-Loop-Computing (XLOOP), at SC19 Denver, Colorado, USA. 18 November 2019
  8. Geoffrey Fox, Shantenu Jha, “Implications of Integration of Deep Learning and HPC for Benchmarking” November 16, 2019
    2019 BenchCouncil International Symposium on Benchmarking, Measuring and Optimizing ( Bench'19 ) Denver, Colorado, USA
  9. Geoffrey Fox, “Twister2 Big Data Environment with Performance, Dependability for Batch and Streaming” The 5th International Conference on Dependability in Sensor, Cloud, and Big Data Systems and Applications (DependSys 2019 ), Guangzhou, China, November 13, 2019
  10. Gregor von Laszewski, “Data Analytics with the Cloudmesh Multi-Cloud Interfaces for the NIST Big Data Reference Architecture”, IndyPy: PyData meeting Indianapolis Oct 11, 2019
  11. Geoffrey Fox, Shantenu Jha, “AI or Machine (actually Deep) Learning and Cyberinfrastructure (HPC)” , October 16 at 4th BDEC2 Meeting ,, October 16-17, 2019, San Diego, California,
  12. Gregor von Laszewski, “Data Analytics with the Cloudmesh Multi-Cloud Interfaces for the NIST Big Data Reference Architecture” PyData Indy conference October 11 2019, Indianapolis
  13. Geoffrey Fox, Shantenu Jha, “Learning Everywhere: Impact on Community” , September 26 at 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California,
  14. Geoffrey Fox, Shantenu Jha, “Learning Everywhere: Impact on HPC/eScience” , September 26 at 15th International Conference eScience 2019, September 24-27, 2019, San Diego, California,
  15. Geoffrey Fox, “Learning Everywhere: Machine (actually Deep) Learning Delivers HPC”, Keynote talk at SKG 2019 The 15th International Conference on Semantics, Knowledge and Grids On Big Data, AI and Future Interconnection Environment, Guangzhou, China, 17-18 Sept 2019
  16. Geoffrey Fox, “Machine Learning and High Performance Computing”, Keynote talk at The 4th International Symposium on Artificial Intelligence and Robotics ( ISAIR2019 ) Kyungpook National University on August 20, 2019, Daegu, Korea
  17. Geoffrey Fox, “HPC, Big Data, and Machine Learning Convergence” Presentation in Washington DC July 16 2019
  18. Judy Qiu (presented by Geoffrey Fox), “Future of Intelligent Edge and Intelligent Cloud” Presented at Plenary Panel: From EDGE to CLOUD July 11 2019 at IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019 ) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy
  19. Judy Qiu (presented by Geoffrey Fox), “Real-Time Anomaly Detection from Edge to HPC-Cloud”, Presented at Session 26: CLOUD Symposium - Cloud and Edge Systems July 11 2019 at IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019 ) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy
  20. Cloud Futures Panel July 9 2019 at IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019 ) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy
  1. Hyungro Lee and Geoffrey C. Fox (presenter), “Big Data Benchmarks of Commercial Bare Metal and Serverless Clouds”, Presented July 9 2019 at IEEE International Conference on Cloud Computing ( IEEE CLOUD 2019 ) Jul 8, 2019 - Jul 13, 2019 - Milan , Italy
  2. Geoffrey Fox, “Perspectives on High-Performance Computing in a Big Data World”, ACM HPDC 2019 The 28th International Symposium on High-Performance Parallel and Distributed Computing, Phoenix, Arizona, USA - June 27, 2019. This uses a video nugget . There is a Google Slides version and a YouTube video (short) or longer version in 5 parts.
  3. Hyungro Lee, “Building Software-Defined Systems with Reproducible Environments”, Indiana University Ph. D. Presentation May 31 2019
  4. Shantenu Jha and Geoffrey Fox,"Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computing", HPBDC workshop at IPDPS , Rio de Janeiro, Brazil, Monday, May 20th, 2019
  5. Geoffrey Fox, “Twister2 for BDEC2”, Presentation at BDEC2 meeting Poznan, Poland May 15, 2019
  6. Geoffrey Fox, “MLforHPC/CI BDEC2 Working Group: Learning Everywhere”, Presentation at BDEC2 meeting Poznan, Poland May 16, 2019
  7. Geoffrey Fox, “Building HPC Big Data Systems”, keynote talk at 2019 International IEEE Conference on High Performance Big Data and Intelligent Systems. HPBD&IS2019 Shenzhen, China May 10 2019
  8. Geoffrey Fox, “HPC, AI, and Big Data, what is the future of CS research and how should we support them?”, Panel talk at 2019 International IEEE Conference on High Performance Big Data and Intelligent Systems. HPBD&IS2019 Shenzhen, China May 10 2019
  9. Geoffrey Fox, “Research in Digital Science Center”, E500 ISE Indiana University class April 18, 2019
  10. Geoffrey Fox, “Some AI in Intelligent Systems Engineering” Indiana University Luddy Hall, Visit of Argonne National Laboratory, April 3, 2019
  11. Geoffrey Fox, “Recap of Bloomington meeting and Summary from Applications Working Group”, presented remotely to BDEC2 meeting in Kobe Japan, February 20, 2019 Kobe time
  12. Geoffrey Fox, Shantenu Jha, “The Promise of Learning Everywhere and MLforHPC”, BDEC2 meeting in Kobe Japan, February 19-21 2019
  13. Geoffrey Fox, “Big Data System Environments”, Multicore World 2019 Workshop , Wellington, New Zealand, February 13 2018.
  14. Oliver Beckstein, Arizona State University “Free energy calculations with alchemlyb” SPIDAL video-conference, February 1, 2019
  15. Gregor von Laszewski, “Remarks on Software for Multi-messenger Astronomy”, at workshop“Planning for Scalable Cyberinfrastructure to support Multi-Messenger Astrophysics” at Columbia University, New York City, January 25-26, 2019
  16. Geoffrey Fox, “Introduction to Cloud Computing and Data Engineering” in Intelligent Systems Engineering Course E222 January 2019. Youtube playlist with index
  17. Geoffrey Fox for the Twister2 Team, “Big Data Overview for Twister2 Tutorial”, January 10-11 2019, 5th International Winter School on Big Data BigDat2019 , Cambridge, United Kingdom - January 7-11, 2019
  18. Geoffrey Fox for the Twister2 Team, “Twister2 Tutorial”, January 10-11 2019, 5th International Winter School on Big Data BigDat2019 , Cambridge, United Kingdom - January 7-11, 2019
  1. Geoffrey Fox for the Twister2 Team, “Introduction to Twister2 for Tutorial”, January 10-11 2019, 5th International Winter School on Big Data BigDat2019 , Cambridge, United Kingdom - January 7-11, 2019
  2. John Paden, Victor Berger, Mohanad Al-Ibadi, Shane Chu, Mingze Xu, David Crandall, Geoffrey Fox, “Subglacial bed topography using machine learning and geostatistical analysis applied to 2D and 3D radar sounding",presentation at AGU Fall Meeting December 10-14 2018 Washington DC
  3. Geoffrey Fox, “Big Data Benchmarking: Applications and Systems”, 2018 International Symposium on Benchmarking, Measuring and Optimizing ( Bench'18 ) at IEEE International Conference on Big Data 2018 Dec 10 - Dec 11, 2018, Westin Hotel, Seattle, WA, USA with full version.
  4. Twister2 Team, “Status of Twister2”, Programming Environment for Global AI and Modeling Supercomputer GAIMSC, December 10 2018 Internal Presentation
  5. Judy Qiu, “Real-Time Anomaly Detection from Edge to HPC-Cloud”, presentation , white paper and video at BDEC2“Big Data and Extreme-Scale Computing”, Workshop, Bloomington, Indiana November 28 - 30, 2018
  6. Geoffrey Fox and Judy Qiu local hosts, BDEC2“Big Data and Extreme-Scale Computing”, Workshop , Bloomington, Indiana November 28 - 30, 2018
  7. Judy Qiu, Bo Peng, Sahil Styagi, Chathura Widanage, " High-Performance AI: A View from Systems and Frameworks”, Deep Learning on Supercomputers Workshop , November 16 2018, SC18 , Dallas
  8. Geoffrey Fox, “Nuts and Bolts of BDEC2 and meeting in Bloomington Indiana November 28-30, 2018”, November 14, 2018 Birds of a Feather session, SC18 , Dallas
  9. Geoffrey Fox, Rosa Badia, Jack Dongarra, “Big Data and Exascale Computing (BDEC2) Application Roundtable”, 5.15pm to 6.45pm, November 14 2018, Birds of a Feather Session, SC18 , Dallas
  10. Geoffrey Fox, “Remarks on Digital Science Center AI Research”, Bloomington, Indiana October 26 2018
  11. Geoffrey Fox, “Basic Kmeans Clustering and Optimization”, E221 Guest Lecture, Luddy 1104 September 25 2018
  12. Geoffrey Fox, “MDS and Visualization”, E221 Guest Lecture, Luddy 1104 September 25 2018
  13. Geoffrey Fox, Clustering and MDS Resource September 25 2018
  1. Geoffrey Fox, “High-Performance Big Data Computing”, September 13, 2018, SKG 2018 The 14th International Conference on Semantics, Knowledge and Grids On Big Data, AI and Future Interconnection Environment, Guangzhou, China, 12-14 Sept 2018
  2. Judy Qiu, “Real-Time Anomaly Detection from Edge to HPC-Cloud”, September 6 2018, Workshop on Clusters, Clouds, and Data for Scientific Computing CCDSC 2018 Châteauform’, La Maison des Contes, 427 Chemin de Chanzé, (near Lyon) France, September 4-7 2018.
  3. Geoffrey Fox, “AI-Driven Science and Engineering with the Global AI and Modeling Supercomputer GAIMSC”, September 5 2018, Workshop on Clusters, Clouds, and Data for Scientific Computing CCDSC 2018 Châteauform’, La Maison des Contes, 427 Chemin de Chanzé, (near Lyon) France, September 4-7 2018. Extra slides
  4. Geoffrey Fox, “Introduction to Cloud Computing and Data Engineering” in Intelligent Systems Engineering Course E222 August 2018.
  5. Geoffrey Fox, “Precision Health Initiative Research in Digital Science Center”, August 24, 2018, Digital Science Center, Department of Intelligent Systems Engineering
  6. Geoffrey Fox, “Research in Digital Science Center”, Long E500 Presentation, August 20, 2018, Digital Science Center, Department of Intelligent Systems Engineering. Embedded Video PowerPoint. or Standard MP4 or Full HDTV MP4
  7. Geoffrey Fox, “Research in Digital Science Center for ISE Graduate Students”, August 13, 2018, Short Presentation for Graduate Student Orientation, Luddy Hall, Digital Science Center, Department of Intelligent Systems Engineering (ISE)
  8. Geoffrey Fox, “What is ISE for Graduate Student Orientation”, Luddy Hall, August 13, 2018, Digital Science Center, Department of Intelligent Systems Engineering (ISE)
  9. Geoffrey Fox, Martin Swany, Kelly Nelson, “Indiana University School of Informatics, Computing and Engineering
    ISE: Intelligent Systems Engineering     “, Department Overview July 18 2017.
  10. Geoffrey Fox, Martin Swany, Kelly Nelson, “Indiana University School of Informatics, Computing and Engineering
    ISE: Intelligent Systems Engineering     “, Department Overview, SICE Connect Day February 17, 2018. OLD version
  11. Geoffrey Fox, “Personal Researcher Spotlight” for Microsoft Faculty Summit Auguat 2-3 2018.
  12. Gregor von Laszewski, Fugang Wang, Allan Streib, Geoffrey Fox, " Education and Research Computing supported by DevOps DSC@ISE@IU”, Wednesday, August 1 2018 at the Middleware and Grid Interagency Coordination Team (MAGIC) monthly meeting
  13. Jerome E. Mitchell, “A PROGRESSIVE STUDY FOR THE AUTOMATIC ANALYSIS OF INTERNAL LAYERS FROM POLAR RADAR IMAGERY” Indiana University Ph. D. Defense July 26, 2018
  14. Supun Kamburugamuve, Pulasthi Wickramasinghe, Kannan Govindarajan, Ahmet Uyar, Gurhan Gunduz, Vibhatha Abeykoon and Geoffrey C. Fox " Twister:Net - Communication Library for Big Data Processing in HPC and Cloud Environment.” July 6, 2018 at Cloud 2018 Conference July 2-7 2018, San Francisco.
  15. Hyungro Lee, Kumar Satyam and Geoffrey C. Fox “Evaluation of Production Serverless Computing Environments” Third International Workshop on Serverless Computing ( WoSC3 ) 2018 July 2 2018 at Cloud 2018 Conference July 2-7 2018, San Francisco. Here are WOSC3 presentations.
  16. Geoffrey Fox, “High-Performance Big Data Computing Environments”, HPC 2018 HIGH PERFORMANCE COMPUTING FROM CLOUDS AND BIG DATA TO EXASCALE AND BEYOND, An International Advanced Workshop , Cetraro, July 2, 2018
  17. Geoffrey Charles Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science June 2018”, Poster at DIBBs18 NSF Workshop , Data Infrastructure Building Blocks (DIBBs), Monday, July 9, 2018 at 11:00 AM - Tuesday, July 10, 2018 at 4:00 PM (EDT), Arlington, Virginia
  18. Geoffrey Fox, “Discussion: Cloud Computing for an AI First Future”, June 14, 2018, 13th Cloud Control Workshop , June 13-15, 2018, Skåvsjöholm in the Stockholm Archipelago
  19. Geoffrey Fox, Gregor von Laszewski, Judy Qiu, “Cloud Management in Cloudmesh & Twister2:
    A High-Performance Big Data Programming Environment”     , June 13, 2018, 13th Cloud Control Workshop , June 13-15, 2018, Skåvsjöholm in the Stockholm Archipelago
  20. Geoffrey Fox, “AI First High Performance Big Data Computing for Industry 4.0”, International Workshop on Industrial Data Intelligence Technology, Jiangsu Industrial Technology Research Institute (JITRI), Southeast University and ACM Nanjing Chapter, Nanjing June 6, 2018
  21. Geoffrey Fox, “High Performance Big Data Computing”, Fudan University, Shanghai, June 5, 2018
  22. Geoffrey Fox, “Indiana University School of Informatics, Computing, and Engineering Research”, Presentation at Sorbonne University, Paris, May 28, 2018
  23. Pulasthi Supun Wickramasinghe, Ph.D. Qualifying Exam: Survey on serverless computing frameworks and internals; Applicability of serverless computing for ML algorithms; Survey on Task Execution frameworks and designing task execution model for Twister, May 25, 2018
  24. Geoffrey Fox, Judy Qiu, Supun Kamburugamuve, “Twister2: A High-Performance Big Data Programming Environment”, HPBDC 2018: The 4th IEEE International Workshop on High-Performance Big Data, Deep Learning, and Cloud Computing, May 21, 2018
  25. Supun Kamburugamuve, “Towards HPC and Big Data Convergence in a Component Based Approach”, Indiana University Ph.D Dissertation Defense, May 14th, 2018
  26. Geoffrey Fox, “Research in Intelligent Systems Engineering”, Indiana University Memorial Union April 27, 2018
  27. Judy Qiu, “Harp-Daal: A High Performance Big Data Analytics Framework for HPC-Cloud”, Research Horizons, Luddy Hall, Indiana University Bloomington, April 12 2018
  28. Geoffrey Fox, “High-Performance Big Data Computing: International, National, and Local initiatives”, Research Horizons, Luddy Hall, Indiana University Bloomington, April 12 2018
  29. Geoffrey Fox and Judy Qiu, “High Performance Big Data Computing in the Digital Science Center”, High-Performance Systems and Analytics for Big Data Workshop , Luddy Hall, Indiana University Bloomington, April 11 2018
  30. Judy Qiu, “Introduction to HPSA18: A path to future Artificial General Intelligence”, High-Performance Systems and Analytics for Big Data Workshop , Luddy Hall, Indiana University Bloomington, April 11 2018
  31. Gregor von Laszewski, Geoffrey C. Fox, Judy Qiu, “Handbook of Clouds and Big Data Theory and Practice” April 8 2018. Up to date version . Used in Indiana University Bloomington Classes Spring 2018.
  32. Geoffrey Fox, “Course Management E222” Introduction to Intelligent Systems Engineering Course E222 January 2018. Recording in handbook above.
  33. Geoffrey Fox, “Introduction to Cloud Computing and Data Engineering” in Intelligent Systems Engineering Course E222 January 2018.
  34. Vibhatha Abeykoon, Tyler Balson, Gregor von Laszewski, Geoffrey Fox, “Apache Spark” in Intelligent Systems Engineering Course E222 February 2018. Recording in handbook above.
  35. Geoffrey Fox, “High Performance Computing HPC and Cyberinfrastructure in Department of Intelligent Systems Engineering”, Luddy Hall February 23, 2018.
  36. Intelligent Systems Engineering SICE Connect Day , Indiana University, Saturday, February 17, 2018, Updated August 12 2018 , Updated October 21 2018
  37. Geoffrey Fox, “Integration of HPC, Big Data Analytics and the Software Ecosystem Tutorial” at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018
  38. Geoffrey Fox, “Integration of HPC, Big Data Analytics and The Software Ecosystem:Tutorial Overview” January 25 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018
  39. Geoffrey Fox , “The High Performance Computing enhanced Apache Big Data Stack and Big Data Ogres
    (Convergence Diamonds) and Remarks on Clouds today     " Backdrop for Tutorial on January 26 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018
  40. Geoffrey Fox , “Twister2: Design and initial implementation of a Big Data Toolkit” January 25 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018. More details of tutorial are in summary .
  41. Geoffrey Fox , “SPIDAL Library and WebPlotViz web Visualization system” January 26 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018. Youtube video for SPIDAL tutorial. More details of 2018 tutorial are in summary . More extensive SPIDAL Tutorial from BigDat 2017
  42. Judy Qiu by Geoffrey Fox , “Harp-DAAL for High Performance Big Data Machine Learning” January 26 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018. Youtube video for Harp with Docker. Video of Harp-DAAL on a Google Cloud. More details of tutorial are in summary .
  43. Judy Qiu by Geoffrey Fox , “Details for Harp-DAAL: A Next Generation Platform for High Performance Machine Learning on HPC-Cloud” January 26 2018 at BigDat 2018: 4th International Winter School on Big Data Timisoara, Romania, January 22-26, 2018
  44. Geoffrey Fox, “Panel on Research Challenges in Big Data” January 24 2018 at BigDat 2018: 4th International Winter School l on Big Data Timisoara, Romania, January 22-26, 2018
  45. Geoffrey Fox, “Research in Digital Science Center”, PTI All-Hands Meeting January 19, 2018 CIB Building Indiana University
  46. Geoffrey Fox with Judy Qiu, Gregor von Laszewski, Martin Swany, " Introduction to Cloud Computing and Data Engineering” for Intelligent Systems Engineering Cloud Computing Classes E222, E516, E616 January 2018. Video recordings of this lecture can be found at Class Handbook
  47. Geoffrey Fox with Gregor von Laszewski, “Course Management for E222” for Intelligent Systems Engineering Cloud Computing Classes E222 January 2018
  48. Vikram Jadhao,Paul Macklin, Andy Somogyi, James Glazier, Trevor Douglas, Marlon Pierce, Geoffrey Fox, “Network for Computational Nanotechnology - Engineered nanoBIO Node (NCN 1720625”, Poster at NSF Nanoscale Science and Engineering Grantees Conference , December 12-13, 2017, Westin Hotel - Arlington, VA
  49. Geoffrey Fox, “Welcome Speech”, The 15th IEEE International Symposium on Parallel and Distributed Processing with Applications [ ISPA 2017 ], The 16th IEEE International Conference on Ubiquitous Computing and Communications [ IUCC 2017 ], The 10th International Conference on Security, Privacy and Anonymity in Computation, Communication and Storage [ SpaCCS 2017 ], December 12-15, 2017, Guangzhou, China
  50. Geoffrey Fox, “Next Generation Grid: Integrating Parallel and Distributed Computing Runtimes from Cloud to Edge Applications”, December 13, 2017 at The 15th IEEE International Symposium on Parallel and Distributed Processing with Applications (IEEE ISPA 2017 ) Guangzhou, China, December 12-15, 2017
  51. Geoffrey Fox, “Components and Rationale of a Big Data Toolkit Spanning HPC, Grid, Edge and Cloud Computing”, December 7, 2017 at UCC conference at Austin Texas December 5-8, 2017.
  52. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low Latency Stream Processing: Twitter Heron with Infiniband and Omni-Path”, December 7, 2017 at UCC conference at Austin Texas December 5-8, 2017.
  53. Geoffrey Fox, Judy Qiu, Peng Bo, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, “HPC Cloud and Big Data Testbed”, presentation at Fudan University Shanghai, November 21 2017
  54. Geoffrey Fox, Judy Qiu, Martin Swany, Thomas Sterling, Gregor von Laszewski, “Engineering Cyberinfrastructure in Intelligent Systems Engineering at Indiana University”, presentation at Fudan University Shanghai, November 20 2017
  55. James Glazier, Maria Bondesson-Bolin, Alexander Gumennik, Feng Guo, Vikram Jadhao, Greg Lewis, Paul Macklin, Endre Somogyi, " Engineering Health and Medicine: An Intelligent Systems Approach at Intelligent Systems Engineering at Indiana University”, presentation at Fudan University Shanghai, November 20 2017. Version with Videos
  56. Judy Qiu, “Harp-DAAL: A Next Generation Platform for High Performance Machine Learning”, Invited talk November 15, 2017 at SC17 conference, Denver CO 2017 with image
  57. Comet Virtualization Team: Trevor Cooper, Dmitry Mishin, Christopher Irving, Gregor von Laszewski (IU) Fugang Wang (IU), Geoffrey C. Fox (IU), Phil Papadopoulos, “Versatile HPC: Comet Virtual Clusters for the Long Tail of Science”, Indiana University Booth Presentation by Gregor von Laszewski November 14 2017 at SC17 conference, Denver CO 2017
  58. Comet Virtualization Team: Trevor Cooper, Dmitry Mishin, Christopher Irving, Gregor von Laszewski (IU) Fugang Wang (IU), Geoffrey C. Fox (IU), Phil Papadopoulos, “Versatile HPC: Comet Virtual Clusters for the Long Tail of Science”, ALL (Campus) Champions meeting Presentation by Gregor von Laszewski November 14 2017 at SC17 conference, Denver CO 2017
  59. Judy Qiu,"Tutorial: Harp-DAAL for High Performance Big Data Machine Learning”, Booth Tutorial at SC17 conference, Denver CO 2017
  60. Judy Qiu, “Welcome to HPCDC Tutorial at SC 2017” Booth Tutorial at SC17 conference, Denver CO 2017
  61. Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Vibhatha Abeykon, Geoffrey Fox, “Twister2: Design of a Big Data Toolkit”, at EXAMPI 2017 workshop November 12 2017 at SC17 conference, Denver CO 2017.
  62. Langshi Chen, Mihai Avram, Supun Kamburugamuve, Judy Qiu, " Tutorial: Harp-DAAL: A High Performance Machine Learning Framework for HPC-Cloud", Presentation at Intel Developers Conference at SC17 conference, Denver CO 2017.Sunday, November 12 Time:9:45 AM - 12:00 PM. See “Hadoop Platform Raised to Knights Landing Height” and the elephant in the data center. Flyer
  63. Geoffrey Fox “Indiana University School of Informatics, Computing and Engineering, ISE: Intelligent Systems Engineering” Complete Presentation Indiana University November 2017
  64. Geoffrey Fox, Judy Qiu, Peng Bo, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, “Big Data Processing Issues taking care of Application Requirements, Hardware, HPC, Grid (distributed), Edge and Cloud Computing”, Indiana University Precision Health Initiative Presentation November 10 2017
  65. Geoffrey Fox “Indiana University School of Informatics, Computing and Engineering: ISE: Intelligent Systems Engineering” Introductory Presentation at IEEE EnCON conference November 10-11 2017 Cyberinfrastructure Building Bloomington Indiana
  66. Geoffrey Fox, Summary video “Welcoming Introduction to Intelligent Systems Engineering”, IEEE EnCON conference November 10-11 2017 Cyberinfrastructure Building Bloomington Indiana
  67. Geoffrey Fox, James Glazier, Vikram Jadhao, Paul Macklin, Laura Pettit, Andy Somogyi, “Engineered nanoBIO Node”, Poster at 2017 NSF ERC Biennial Meeting (see here ) October 31-November 2 2017 Arlington, Washington DC
  68. Geoffrey Fox, “Engineered nanoBIO Node”, One slide Lightning talk at 2017 NSF ERC Biennial Meeting (see here ) October 31-November 2 2017 Arlington, Washington DC
  69. Suresh Marru,Vikram Jadhao, “Development of the Nanoconfinement Science Gateway”, The 12th Gateway Computing Environments Conference (formerly GCE), Monday through Wednesday, October 23–25, 2017, Hosted at the University of Michigan, Ann Arbor
  70. Paul Macklin, “Macro or Multi-cell Activities in the Engineered nanoBIO Node” Presentation at Planning meeting October 17-18 NSF Washington DC
  71. James Glazier and Andy Somogyi, “Nano-Cell Activities in the Engineered nanoBIO Node” Presentation at Planning meeting October 17-18 NSF Washington DC
  72. Vikram Jadhao “Nanotechnology in the Engineered nanoBIO Node” Presentation at Planning meeting October 17-18 NSF Washington DC
  73. Geoffrey Fox, James Glazier, Vikram Jadhao, Paul Macklin, Laura Pettit, Andy Somogyi, “Overview of Engineered nanoBIO Node at Indiana University”, Presentation at Planning meeting October 17-18 NSF Washington DC.
  74. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, “Designing a Big Data Toolkit spanning HPC, Grid, Edge and Cloud Computing”, Colloquium at SUNY Binghamton October 13 2017
  75. Judy Qiu, “A High Performance Model-Centric Approach to Machine Learning Across Emerging Architectures”, Presentation at Oak Ridge National Laboratory, October 2 2017
  76. Supun Kamburugamuve, Karthik Ramasamy, Martin Swany, Geoffrey Fox, “Low Latency Streaming: Heron on InfiniBand”, Presentation at Strata Data Conference New York NY September 26-28, 2017
  77. Geoffrey Fox, with Judy Qiu, Shantenu Jha, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, “MPI, Dataflow, Streaming: Messaging for Diverse Requirements”, 25 years of MPI Symposium at EuroMPI/USA 2017 conference , September 25, 2017
  78. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham), “Summary of NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science”, September 15 2017.
  79. Geoffrey Fox, with Judy Qiu, Shantenu Jha, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe “HPC-enhanced IoT and Data-based Grid”, Keynote September 14 2017, BASARIM 2017, 5th Turkish National High Performance Computing Conference , September 14-15, 2017, Yildiz Technical University, Istanbul, Turkey
  80. Geoffrey Fox, with Judy Qiu, Shantenu Jha, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, " Cyberinfrastructure Clouds HPC Edge Computing" September 13 2017 at Tubitak campus, Istanbul, Turkey
  81. Jerome Mitchell, “An Improved Probabilistic Graphical Model for the Detection of Internal Layers from Polar Radar Imagery” Indiana University Ph.D. Proposal, September 6, 2017
  82. Geoffrey Fox, “Introduction to Intelligent Systems Engineering E500 – Part II: Cyberinfrastructure Clouds HPC Edge Computing”, Intelligent Systems Engineering Class E500 August 30 2017, MP4 .
  83. Geoffrey Fox, “Introduction to Intelligent Systems Engineering E500 – Part I: Cyberinfrastructure Clouds HPC and a little Physics”, September 28 2017, MP4-Part1 , MP4-Part2 , MP4-Part3 .
  84. Geoffrey Fox, “Research in Digital Science Center”, PTI All Hands Meeting, Indiana University Bloomington, August 25 2017
  85. Geoffrey Fox, “Research in Digital Science Center”, Intelligent Systems Engineering Lightning Talk, Indiana University Bloomington, August 17 2017
  86. Geoffrey Fox,"Next Generation IoT and Data-based Grid" The 13th International Conference on Semantics, Knowledge and Grids SKG2017 Beijing, China August 15, 2017
  87. Geoffrey Fox, “Characteristics of Future Big Data Platforms” The Fifth International Conference on Advanced Cloud and Big Data CBD 2017 August 13, 2017
  88. Geoffrey Fox, Shantenu Jha “A Tale of Two Convergences: Applications and Computing Platforms”, 2017 New York Scientific Data Summit ( NYSDS ), Data-Driven Discovery in Science and Industry August 8, 2017
  89. Geoffrey Fox, “Big Data and High-Performance Technologies for Natural Computation”, 3th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery ( ICNC-FSKD 2017 ) Guilin, China July 29-31, 2017. Longer version
  90. Geoffrey Fox, “Introduction to Intelligent Systems Engineering Department at Indiana University”, July 18 2017, MP4 .
  91. Supun Kamburugamuve, “Designing Efficient Programming Environment Toolkits for Big Data: Integrating Parallel and Distributed Computing”, Ph.D. Thesis Proposal Indiana University July 6 2017
  92. Geoffrey Fox, Supun Kamburugamuve, Judy Qiu, Shantenu Jha, “Next Generation Grid: Integrating Parallel and Distributed Computing Runtimes for an HPC Enhanced Cloud and Fog Spanning IoT Big Data and Big Simulations” June 28, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii (longer version )
  93. Hyungro Lee, “Efficient Software Defined Systems using Common Core Components” June 28, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  94. Judy Qiu “Benchmarking Harp-DAAL: High Performance Hadoop on KNL Clusters” , June 27, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  95. Geoffrey Fox, “Keynote Panel 2: Cloud Computing Status and Future”, Panel moderator at IEEE Services Conference Federation (SCF 2017), June 26, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  96. Chandra Krintz, U.C. Santa Barbara, “The Future of Cloud ...”, Presentation at Cloud Computing Status and Future" Panel at IEEE Services Conference Federation (SCF 2017), June 26, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  97. Judy Qiu, “Intelligent HPC Cloud Illustrated by Harp and Harp-DAAL at Indiana University” Presentation at Cloud Computing Status and Future" Panel at IEEE Services Conference Federation (SCF 2017), June 26, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  98. Rich Wolski, U.C. Santa Barbara, “We Need a Cloud, not a Mountain”, Presentation at Cloud Computing Status and Future" Panel at IEEE Services Conference Federation (SCF 2017), June 26, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  99. Dennis Gannon, “Cloud Evolution”, Presentation at Cloud Computing Status and Future" Panel at IEEE Services Conference Federation (SCF 2017), June 26, 2017, IEEE Cloud 2017 Conference Honolulu, Hawaii
  100. Judy Qiu, “Scalable High Performance Data Analytics: Harp and Harp-DAAL: Indiana University” Spidal Zoom Presentation June 23 2017
  101. Geoffrey Fox, “Theme 4: High-performance computing for Precision Health Initiative”, PHI Internal Presentation Indianapolis June 15, 2017
  102. Geoffrey Fox, “Theme 4: High-performance computing for Precision Health Initiative”, PHI Internal Presentation Indianapolis February 2, 2017
  103. Geoffrey Fox, Supun Kamburugamuve, Judy Qiu, Shantenu Jha, “A Global System Architecture Next Generation HPC-ABDS”, Spidal Zoom Presentation June 9 2017
  104. Geoffrey Fox, Piyush Mehrotra, (NASA Ames, “Volume 3, Use Cases and General Requirements. NIST Big Data Public Working Group Overview”, Breakout Session, June 1, 2017, 2nd NIST Big Data Public Working Group (NBD-PWG) Workshop , NIST Headquarters
  105. Geoffrey Fox, Piyush Mehrotra, (NASA Ames, “Volume 3, Use Cases and General Requirements. NIST Big Data Public Working Group Overview”, Status session June 1, 2017, 2nd NIST Big Data Public Working Group (NBD-PWG) Workshop , NIST Headquarters
  106. Hyungro Lee, Geoffrey C. Fox, “Software Defined Systems with DevOps Tools and Infrastructure Provisioning”, Ph.D. Forum at IPDPS conference Orlando FL May 30-June 2, 2017
  107. Geoffrey Fox, “Sunrise or Sunset: Exploring the Design Space of Big Data Software Stacks”, Panel at HPBDC 2017 3rd IEEE International Workshop on High-Performance Big Data Computing, IPDPS , Orlando FL May 29, 2017
  108. Judy Qiu, “Scalable High Performance Data Analytics” Intel®PCC Showcase: Indiana University, May 22 2017 presentation from Indiana University
  109. Geoffrey Fox, “The High Performance Computing enhanced Apache Big Data Stack and Big Data Ogres”, Workshop on Big Data and Data Science, Hartree Centre, Daresbury Laboratory, Warrington, UK, May 4, 2017
  110. Geoffrey Fox, “Structure of Problems and its Relation to Software and Hardware”, Scientific Computing Department, Rutherford Appleton Laboratory, Chilton, UK, May 3, 2017
  111. David Crandall, Geoffrey Fox, “Optimization: Algorithms and Applications”, Indiana University Bloomington, SPIDAL Zoom Presentation, April 7 2017
  112. Gregor von Laszewski, Fugang Wang, Dmitry Mishin, Trevor Cooper, Christopher Irving, Phil Papadopoulos, Geoffrey C. Fox, “Virtual Clusters Production Experience”, San Diego Supercomputer Center, March 21 2017
  113. Geoffrey Fox, “Current challenges and opportunities for big data research and development”, Panel Presentation, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  114. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Tutorial Overview: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  115. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Master Presentation: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  116. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Big Data Use Cases: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  117. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Big Data Use Case Examples: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  118. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Deterministic Annealing Algorithms for Analytics: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  119. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “WebPlotViz: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  120. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “General Discussion of HPC-ABDS: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  121. Saliya Ekanayake (Virginia Tech); Geoffrey Fox (Indiana University), “SPIDAL Java Optimization: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  122. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “SPIDAL Analytics Performance: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  123. Ioannis Paraskevakos, Andre Luckow, Shantenu Jha (Rutgers); Oliver Beckstein (Arizona State); presented by Geoffrey Fox, “MIDAS- Molecular Dynamics Analysis Tutorial”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  124. Langshi Chen, Bingjing Zhang, Peng Bo, Judy Qiu, Indiana University; presented by Geoffrey Fox, “Harp HPC for Big Data: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  125. David Crandall (Indiana University); Fusheng Wang (Stony Brook); " Image & Model Fitting Abstractions", BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  126. David Crandall (Indiana University); John Paden (Kansas); “Polar Science Applications”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  127. Jun Kong (Emory University); Fusheng Wang (Stony Brook); presented by Geoffrey Fox, “2D/3D Pathology Image and Spatial Analysis”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  128. Fusheng Wang (Stony Brook); presented by Geoffrey Fox, " Integrative Big Spatial Data Analytics for Public Health Studies: February 2017", BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  129. Oliver Beckstein (Arizona State); presented by Geoffrey Fox, " MDAnalysis and Biomolecular Simulations", BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  130. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “HPC Cloud Convergence: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  131. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Software Defined Systems: February 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  132. Geoffrey Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “Status and Challenges: January 2017”, BigDat 2017 MIDAS and SPIDAL Tutorial Bari Italy February 13-14 2017
  133. Geoffrey Fox, “Big Data Applications & Analytics Motivation: Big Data and the Cloud; Centerpieces of the Future Economy”, Introduction to Big Data Applications and Analytics INFO I-523 Spring 2015 class .
  134. Geoffrey Fox, “Overview of NIST Big Data Public Working Group (NBD-PWG) Process and Results”, Spring 2014 I523 Part I of lectures on NIST Big Data use cases
  135. Geoffrey Fox, “51 Big Data Use Cases”, Spring 2014 I523 Part II of lectures on NIST Big Data use cases
  136. Geoffrey Fox, “Features of 51 Big Data Use Cases”, Spring 2014 I523 Part III of lectures on NIST Big Data use cases
  137. Geoffrey Fox, “Theme 5: High-performance computing for Precision Health Initiative”, Report February 3, 2017
  138. Geoffrey Fox, “Physical Optimization” Third Keck Symposium on Computational Biology, Houston, Texas November 1 1992, updated to Spring 2002 class
  139. Geoffrey Charles Fox, David Crandall, Judy Qiu, Gregor Von Laszewski, Shantenu Jha, John Paden, Oliver Beckstein, Tom Cheatham, Madhav Marathe, Fusheng Wang, “NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science 2017”, Poster January 11-12 2017 for Dibbs PI Meeting Westin Hotel DOI
  140. Geoffrey Fox, Shantenu Jha, “NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science” in Most Significant DIBBs Challenges/Solutions Panel January 11 2017 for Dibbs PI Meeting Westin Hotel
  141. Geoffrey Fox “HPCCloud 3.0: Big Data on Clouds and HPC”, Presentation at International Workshop on Foundations of Big Data Computing (BigDF) in conjunction with HiPC 2016 at Hyderabad International Conference Centre, Hyderabad, India, December 19, 2016
  142. Geoffrey Fox “Big Data on Clouds and HPC”, Presentation December 17 at The 17th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT-16), December 16-18, 2016, Guangzhou, China, Sponsored by Sun Yat-Sen University
  143. Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Geoffrey Charles Fox, “Java Thread and Process Performance for Parallel Machine Learning on Multicore HPC Clusters”, Presentation at 2016 IEEE International Conference on Big Data , December 5 - December 8, 2016 Washington DC, USA
  144. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena, Milinda Pathirage, Geoffrey Fox, “TSmap3D: Browser Visualization of High Dimensional Time Series Data”, Presentation at Advances in High Dimensional Big Data (2nd Workshop ) in 2016 IEEE International Conference on Big Data, December 5 - December 8, 2016 Washington DC, USA
  145. Geoffrey Fox, Gregor von Laszewski, “Some Remarks for Cloud Forward Internet2 Workshop”, Cloud Forward Workshop Washington DC, Westin Hotel, December 7-8 2016
  146. Indiana University (Fox, Qiu, Crandall, von Laszewski, Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham), “NSF 1443054: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science”, Poster December 6 2016
  147. Geoffrey Fox, “Indiana University School of Informatics and Computing ISE: Intelligent Systems Engineering” Presentation at IUPUI Indianapolis November 18 2016
  148. Geoffrey Fox, “Convergence of Big Data and Extreme Computing”, presentation at BDEC Birds of a Feather November 16, 2016, SC16 Salt Lake City November 13-18 2016.
  149. Geoffrey Fox, “Data Science for Life Sciences Research & the Public Good”, Panel at SDSC Booth November 16, 2016, SC16 Salt Lake City November 13-18 2016.
  150. Judy Qiu, “Accelerating Machine Learning with Model-Centric Approach on Emerging Architectures”, Keynote at MTAGS16: 9th Workshop on Many-Task Computing on Clouds, Grids, and Supercomputers Workshop (MTAGS), November 14, 2016 SC16 Salt Lake City, Utah
  151. Langshi Chen, Bingjing Zhang, Peng Bo, Judy Qiu, “Harp-DAAL: A new Fast Machine Learning Framework on Emerging Architectures”, SC16 Salt Lake City Indiana University IPCC@IU Exhibit Booth November 14-17 2016
  152. Geoffrey C. Fox, David Crandall, Judy Qiu, Gregor von Laszewski, Fugang Wang, Badi' Abdul-Wahid, Saliya Ekanayake, Supun Kamburugamuva, Jerome Mitchell, Bingjing Zhang, Pulasthi Wickramasinghe, Hyungro Lee, Andrew Younge, School of Informatics and Computing,"Digital Science Center Poster I", SC16 Salt Lake City Indiana University Exhibit Booth November 14-17 2016 DOI: 10.13140/RG.2.2.32549.70880
  153. Geoffrey C. Fox, David Crandall, Judy Qiu, Gregor von Laszewski, Fugang Wang, Badi' Abdul-Wahid, Saliya Ekanayake, Supun Kamburugamuva, Jerome Mitchell, Bingjing Zhang, Pulasthi Wickramasinghe, Hyungro Lee, Andrew Younge, School of Informatics and Computing,"Digital Science Center Poster II", SC16 Salt Lake City Indiana University Exhibit Booth November 14-17 2016 DOI: 10.13140/RG.2.2.15772.49281
  154. Geoffrey C. Fox, David Crandall, Judy Qiu, Gregor von Laszewski, Fugang Wang, Badi' Abdul-Wahid, Saliya Ekanayake, Supun Kamburugamuva, Jerome Mitchell, Bingjing Zhang, Pulasthi Wickramasinghe, Hyungro Lee, Andrew Younge, School of Informatics and Computing,"Digital Science Center Poster III", SC16 Salt Lake City Indiana University Exhibit Booth November 14-17 2016 DOI: 10.13140/RG.2.2.22483.37926
  155. C. A. Davis, G. L. Ciampaglia, L. M. Aiello, K. Chung, M. D. Conover, E. Ferrara, A. Flammini, G. C. Fox, X. Gao, B. Gonçalves, P. A. Grabowicz, K. Hong, P. Hui, David Scott McCaulay, K. McKelvey, M. R. Meiss, S. Patil, C. P. Kankanamalage, V. Pentchev, J. Qiu, J. Ratkiewicz, A. Rudnick, B. Serrette, P. Shiralkar, O. Varol, L. Weng, T. Wu, A. J. Younge, F. Menczer, “OSoMe: The IUNI Observatory on Social Media”, Poster at SC16 November 15 2016, Salt Lake City, November 14-17 2016
  156. Judy Qiu, Bingjing Zhang, Peng Bo, Thomas Wiggins, “Scalable Parallel Interoperable Data Analytics Library”, Intel® Parallel Computing Center at Indiana University; SC15 Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  157. Geoffrey Fox, “Digital Science Center Research in High Performance Computing, Distributed Computing and Big Data”, PHI (Precision Health Initiative) Presentation Indiana University October 28 2016
  158. Geoffrey Fox, Saliya Ekanayake, Supun Kamburugamuve " Distinguishing Parallel and Distributed Computing Performance", SPIDAL Project Presentation by video conferencing, October 28, 2016
  159. Andrew J. Younge, “Architectural Principles and Experimentation of Distributed High Performance Virtual Clusters”, Indiana University Ph.D Dissertation Defense, October 10th, 2016
  160. Geoffrey Fox, Saliya Ekanayake, Supun Kamburugamuve, " Distinguishing Parallel and Distributed Computing Performance", Workshop on Clusters, Clouds, and Data for Scientific Computing CCDSC 2016, La maison des contes Lyon France, October 4 2016, Longer version .
  161. Saliya Ekanayake, “Towards a Systematic Study of Big Data Performance and Benchmarking”, Indiana University Ph.D Dissertation Defense, September 28th, 2016
  162. Geoffrey Fox, “Using HPC-ABDS for Streaming Data”, Location Powers: BIG DATA workshop , Orlando, FL part of September '16 OGC Technical Committee Meeting , September 20, 2016
  163. Geoffrey Fox “Particle Physics Phenomenology: The Beginning of Data Science diverted by Parallel Computing”, A Life in the Information Age, Professor Tony Hey's 70th birthday celebration, Southampton, UK, September 16 2016
  164. Geoffrey Fox “Big Data and Simulations: HPC and Clouds”, COMPUTER SCIENCE MEETS ENVIRONMENTAL SCIENCE workshop, Reading UK, September 15, 2016
  165. Geoffrey Fox “Big Data and Simulations: HPC and Clouds”, Data-Intensive Science and Technologies Workshop , RAL UK, September 14, 2016
  166. Geoffrey Fox, “Structure of Applications and Infrastructure in Convergence of High Performance Computing and Big Data”, 8-th International Conference on Intelligent Networking and Collaborative Systems INCoS-2016, Ostrava, Czech Republic, September 7 - 9, 2016; Video links: Part A , Part B , Part C
  167. Geoffrey Fox,"Big Data on Clouds and High Performance Computing", August 23, 2016, The 14th IEEE International Symposium on Parallel and Distributed Processing with Applications (IEEE ISPA-16, Trustcom, BigDataSE, Tianjin, China, 23-26 August, 2016
  168. Geoffrey Fox,"High Performance Computing and Big Data", Big Data Institute , Seoul National University, Korea, August 22, 2016
  169. Geoffrey Fox, “Big Data and High Performance Computing”, August 19, 2016, Beihang University, Beijing, China
  170. Geoffrey Fox “Designing and Building an Analytics Library with the Convergence of High Performance Computing and Big Data” August 16, 2016 at The 12th International Conference on Semantics, Knowledge and Grids, 15th-17th August 2016, Beijing Yanshan Hotel, Beijing, China
  171. Geoffrey Fox, “Challenges in Big Data, Big Simulations, Clouds and HPC”, and larger version , IEEE Cloud and Big Data Computing Conference CBDCom, July 19, 2016, Toulouse France July 18-21
  172. Andrew Younge, “Architectural Principles and Experimentation of Distributed High Performance Virtual Clusters”, Presentation at NERSC Lawrence Berkeley National Laboratory July 8 2016
  173. Judy Qiu, “Accelerating Machine Learning with Model-Centric Approach on Emerging Architectures”, presentation at 3rd Workshop on Algorithms and Systems for MapReduce and Beyond ( BeyondMR2016 ), held in conjunction with SIGMOD/PODS2016 , July 1, 2016
  174. Geoffrey Fox, “Implementing parts of HPC-ABDS in a multi-disciplinary collaboration”, June 30, 2016 presentation at HPC 2016 workshop , HIGH PERFORMANCE COMPUTING FROM CLOUDS AND BIG DATA TO EXASCALE AND BEYOND June 27- July 1 2016 Cetraro
  175. Judy Qiu, “Convergence of HPC and Clouds for Large-Scale Data enabled Science”, June 29, 2016 presentation at HPC 2016 workshop , HIGH PERFORMANCE COMPUTING FROM CLOUDS AND BIG DATA TO EXASCALE AND BEYOND June 27- July 1 2016 Cetraro
  176. Geoffrey Fox, “Application and Software Classifications that motivate Big Data and Big Simulation Convergence”, June 28, 2016 presentation at HPC 2016 workshop , HIGH PERFORMANCE COMPUTING FROM CLOUDS AND BIG DATA TO EXASCALE AND BEYOND June 27- July 1 2016 Cetraro
  177. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, Supun Kamburugamuve, “Big Data, Simulations and HPC Convergence”, BDEC: Big Data and Extreme-scale Computing workshop , June 15-17 2016 Frankfurt, Longer version
  178. Geoffrey Fox, “Building a Library at the Nexus of High Performance Computing and Big Data”, ScaDS and BBDC Big Data All-Hands-Meeting , June 2-3 2016 Dresden
  179. Supun Kamburugamuve, Saliya Ekanayake, Milinda Pathirage, Geoffrey Fox, “Towards High Performance Processing of Streaming Data in Large Data Centers” , HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016
  180. Andrew J. Younge, Christopher Reidy, Robert Henschel, Geoffrey C. Fox, “Evaluation of SMP Shared Memory Machines for Use With In-Memory and OpenMP Big Data Applications”, HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016
  181. Geoffrey Fox, “Panel on Merge or Split: Mutual Influence between Big Data and HPC Techniques”, HPBDC 2016 IEEE International Workshop on High-Performance Big Data Computing in conjunction with The 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2016), Chicago Hyatt Regency, Chicago, Illinois USA, Friday, May 27th, 2016
  182. Indiana University (Fox, Qiu, Crandall, von Laszewski), Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham), “Datanet: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science” presentation at “Advancing the state-of-the-art in high-performance computing, communications and data analytics” workshop at Pittsburgh PA May 17-18 2016. Smaller version
  183. Saliya Ekanayake, “SPIDAL Java: High Performance Data Analytics with Java on Large Multicore HPC Clusters”, Biocomplexity Institute of Virginia Tech, May 16th, 2016
  184. Andrew Younge, “Architectural Principles and Experimentation of Distributed High Performance Virtual Clusters”, Presentation at Sandia National Laboratory April 2016
  185. Geoffrey Fox “4 Education Initiatives: Data Science, Informatics, Computational Science and Intelligent Systems Engineering; What succeeds?” National Academies Workshop on COLLABORATIVE GRADUATE TRAINING INITIATIVES IN HIGH-PERFORMANCE COMPUTING FOR THE SOLID EARTH SCIENCES Keck Center, Washington DC, April 11 2016
  186. Gregor von Laszewski, “Overview of Datanet: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science” 5th National Data Service Consortium Workshop Datanet/Dibbs Panel Renaissance Computing Institute UNC Chapel Hill NC, April 6 2016
  187. Saliya Ekanayake, Supun Kamburugamuve and Geoffrey Fox, “SPIDAL Java: High Performance Data Analytics with Java on Large Multicore HPC Clusters” in 24th High Performance Computing Symposium ( HPC 2016 ), April 3-6, 2016, Pasadena, CA, USA as part of the SCS Spring Simulation Multi-Conference ( SpringSim'16 )
  188. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena and Geoffrey Fox, “WebPlotViz: Browser Visualization of High Dimensional Streaming Data with HTML5”, STREAM2016 Workshop March 22-23 Sheraton Tysons Corner, Washington DC
  189. Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan, “Summary of Streaming Data Workshop STREAM2015 October 27-28 2015”, STREAM2016 Workshop March 22-23 Sheraton Tysons Corner, Washington DC
  190. Supun Kamburugamuve, Hengjing He, Geoffrey Fox, and David Crandall, “Cloud-based Parallel Implementation of SLAM for Mobile Robots”. International Conference on Internet of things and Cloud Computing (ICC 2016) The Møller Centre-CHURCHILL COLLEGE, Cambridge, United Kingdom, March 22-23 2016
  191. Judy Qiu “Data-enabled Science and Engineering: Scalable High Performance Data Analytics” Presentation in ISL/NCSA Colloquium Series at UIUC March 14 2016
  192. Geoffrey Fox, “Big Data HPC Convergence” 5th Multicore World meeting , 15-17 February 2016 – Shed 6, Wellington, New Zealand, February 16 2016
  193. Geoffrey Fox, “Big Data HPC Convergence and a bunch of other things”, and smaller version , JSU/CSET’s BIG DATA SPRING 2016 Thought Leaders Colloquium, Jackson State University, February 4, 2016
  194. Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan, David Crandall, Supun Kamburugamuve, Jangwon Lee, Jingya Wang, “Summary of Streaming Data Workshop STREAM2015 October 27-28 2015 with still to come: STREAM2016 March 21-24 2016 and a few remarks on IU DDDAS work”, DDDAS PI Meeting Basic Research Innovation and Collaboration Center (BRICC), 4075 Wilson Blvd., Suite 350, Arlington, VA 22203, Washington DC, January 27, 2016
  195. Geoffrey Fox, David Crandall, Supun Kamburugamuve, Jangwon Lee, Jingya Wang, “High Performance Processing of Streaming Data in the Cloud”, DDDAS PI Meeting Basic Research Innovation and Collaboration Center (BRICC), 4075 Wilson Blvd., Suite 350, Arlington, VA 22203, Washington DC, January 27, 2016. Details from David Crandall.
  196. Geoffrey Fox, David Crandall, Judy Qiu, Gregor von Laszewski, " Data Science at Digital Science Center", Internal Presentation, Indiana University, Bloomington, January 20 2016
  197. Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan, “Summary of Streaming Data Workshop STREAM2015 October 27-28 2015”, NSF Presentation January 14 2016
  198. Geoffrey Fox, “Big Data Panel”, International Workshop on Foundations of Big Data Computing in conjunction with 22nd International Conference on High Performance Computing (HiPC), Bengaluru, India December 16 2015
  199. Supun Kambrugamuve, Saliya Ekanayake, Milinda Pathirage and Geoffrey Fox, “High Performance Processing of Streaming Data”, Workshops on Dynamic Data Driven Applications Systems(DDDAS) in conjunction with: 22nd International Conference on High Performance Computing (HiPC), Bengaluru, India December 16 2015. Slideshare
  200. Geoffrey Fox, Shantenu Jha, Judy Qiu, “Classifying Simulation and Data Intensive Applications and the HPC-Big Data Convergence”, WBDB 2015 Seventh Workshop on Big Data Benchmarking, Delhi India, December 14, 2015; Slideshare ; Longer version
  201. Bingjing Zhang, A Collective Communication Layer for the Software Stack of Big Data Analytics , Thesis Proposal Indiana University December 8 2015
  202. Jangwon Lee, Jingya Wang, Supun Kamburugamuve, David Crandall and Geoffrey Fox, “Real-Time Object Detection for Unmanned Aircraft using Cloud-based Convolutional Neural Networks”, Fall Projects and Research Symposium School of Informatics and Computing,December 4, 2015
  203. Geoffrey Fox, Sidd Maini, Howard Rosenbaum, David Wild, Data Science and Online Education , DTW: 2015 Data Teaching Workshop – 2nd IEEE STC CC and RDA Workshop on Curricula and Teaching Methods in Cloud Computing, Big Data, and Data Science as part of CloudCom 2015 , Vancouver, Nov 30-Dec 3, 2015. Short version .
  204. Geoffrey Fox, Judy Qiu, Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Cookbook on Clustering, Dimension Reduction and Point Cloud Visualization , December 4 2015, SPIDAL collaboration presentation, Indiana University Bloomington (but streamed to collaboration)
  205. Linda Hayden, REU Site: Arctic and Antarctic Project (AaA-REU) with Research Experience for Teachers (RET) Component , SC15 Exhibit Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  206. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Milinda Pathirage, Maya Smith, Anthony Scott and Geoffrey Fox, Dimension Reduction and Visualization of Financial Data , SC15 Exhibit Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  207. Geoffrey C. Fox, David Crandall, Judy Qiu, Gregor von Laszewski, Fugang Wang, Badi' Abdul-Wahid, Saliya Ekanayake, Supun Kamburugamuva, Jerome Mitchell, Bingjing Zhang, “Digital Science Center I” , with PowerPoint , SC15 Exhibit Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  208. Geoffrey C. Fox, David Crandall, Judy Qiu, Gregor von Laszewski, Fugang Wang, Badi' Abdul-Wahid, Saliya Ekanayake, Supun Kamburugamuva, Jerome Mitchell, Bingjing Zhang, “Digital Science Center II” with PowerPoint , SC15 Exhibit Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  209. Judy Qiu, Steve Gottlieb, Bingjing Zhang, Peng Bo, Thomas Wiggins, Saliya Ekanayake and Ruizi Li, High Performance Simulation and Data Analytics , Intel® Parallel Computing Center at Indiana University; SC15 Poster at 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  210. Stephen Wu Judy Qiu, Towards an Understanding of Scalable Query and Data Analysis for Social Media Data using High-Level Dataflow Systems , MTAGS workshop , SC15 27th annual International Conference for High Performance Computing, Networking, Storage and Analysis Austin, TX November 15-20 2015.
  211. Tak Lon (Stephen) Wu, Abhilash Koppula, Judy Qiu, Integrating Pig with Harp to Support Iterative Applications with Fast Cache and Customized Communication , 5th International Workshop on Data Intensive Computing in the Clouds (DataCloud) 2014, SC14 Conference New Orleans November 21 2014.
  212. Supun Kamburugamuve, Streaming Applications for Robots with Real Time QoS , Streaming and Steering Applications: Requirements and Infrastructure STREAM2015 workshop IUPUI Indianapolis October 27-29 2015. Video
  213. Judy Qiu, Parallel Clustering of High-Dimensional Social Media Data Streams , Streaming and Steering Applications: Requirements and Infrastructure STREAM2015 workshop IUPUI Indianapolis October 27-29 2015.
  214. David Crandall, Streaming deep learning for robotics and mobile cameras . Streaming and Steering Applications: Requirements and Infrastructure STREAM2015 workshop IUPUI Indianapolis October 27-29 2015. Video
  215. Geoffrey Fox, Big Data Applications, Software and System Architectures , SBAC-PAD 2015, 27th International Symposium on Computer Architecture and High Performance Computing, Majestic Palace Hotel in Florianopolis-SC, Brazil, October 18-21 2015
  216. Geoffrey Fox, Big Data Applications, Software and System Architectures , Texas A&M University-Corpus Christi, College of Science & Engineering Distinguished Speaker October 9 2015
  217. Geoffrey Fox, Judy Qiu, Gregor von Laszewski, Saliya Ekanayake, Bingjing Zhang, Hyungro Lee, Fugang Wang, Abdul-Wahid Badi, Data Analytics with HPC and DevOps , September 8 2015, PPAM 2015, 11th International Conference On Parallel Processing And Applied Mathematics, Krakow, Poland, September 6-9, 2015. Short version .
  218. Geoffrey Fox, Data Science at Digital Science Center , Lightning Talk at Indiana University September 11 2015 video
  219. Judy Qiu, Data-enabled Science and Engineering: Scalable High Performance Data Analytics , Computer Science Colloquium Indiana University, August 28 2015
  220. Geoffrey Fox, Classification of Big Data Applications and Convergence of HPC and Cloud Technology ,11th International Conference on Semantics, Knowledge and Grids, SKG 2015, Aug 19 -21, 2015, Beijing Yanshan Hotel, Beijing, China. Short Version . Youtube V ersion
  221. Geoffrey Fox Implications of NIST Big Data Application Classification for Benchmarking online presentation to IEEE SPEC Research Group on Big Data August 5 2015.
  222. CINET One day workshop at Virginia Tech July 10 2015
  223. Judy Qiu, Towards HPC-ABDS: An Initial Experience Optimizing Hadoop for Scalable High Performance Data Analytics, Presentation at Virginia Tech July 9 2015.
  224. IU(Fox, Qiu, Crandall, von Laszewski), Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State(Beckstein), Utah(Cheatham) CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science Internal Presentation Indiana University, June 23 2015
  225. Geoffrey Fox, [The Past and the
    Future](http://infomall.org/presentations/PWA-ssrt_June8-2015.pptx)
    This talk gives a broad overview, incl. role of hadrons, hadron reaction phenomenology, past achievements and future goals, 2015 International Summer Workshop on Reaction Theory, Indiana University Bloomington, June 8 2015
  226. Geoffrey Fox, RaPyDLI: Rapid Prototyping HPC Environment for Deep Learning NSF 1439007, NSF XPS PI Meeting, Washington DC June 2, 2015 for Indiana University, University of Tennessee Knoxville, Stanford University. Longer version
  227. Geoffrey Fox, Visualizing and Clustering Life Science Applications in Parallel , HiCOMB 2015 14th IEEE International Workshop on High Performance Computational Biology at IPDPS 2015, Hyderabad, India, May 25, 2015. Slideshare
  228. Geoffrey Fox, Lessons from Data Science Program at Indiana University: Curriculum, Students and Online Delivery , NSF/TCPP Workshop on Parallel and Distributed Computing Education Edupar at IPDPS 2015, Hyderabad, India, May 25, 2015. Slideshare
  229. Xiaoming Gao, Emilio Ferrara, Judy Qiu (presented by Geoffrey Fox), Parallel Clustering of High-Dimensional Social Media Data Streams , CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, May 4-7 2015 held in Shenzhen, Guangdong, China
  230. Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve, Andre Luckow, HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack (with a bias to Streaming) , Invited talk at 2nd International Workshop on Scalable Computing For Real-Time Big Data Applications (SCRAMBL'15) May 4 2015 at.CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China. Slideshare
  231. Geoffrey Fox Streaming Applications in NIST Public Big Data Working Group , IOT day online presentation
  232. Judy Qiu The Convergence of Cloud, Big Data and Mobile: What could happen in 5 years? IWCA Panel at the The 2nd IEEE Workshop on Cloud Analytics at IEEE International Conference on Cloud Engineering ( IC2E ) conference Tempe AZ March 12 2015
  233. Judy Qiu Programming Models for IoT and Streaming Data at Panel on “Cloud and Internet of Things” at IEEE International Conference on Cloud Engineering ( IC2E ) conference Tempe AZ March 11 2015
  234. Geoffrey Fox Introduction at Panel on “Cloud and Internet of Things” at IEEE International Conference on Cloud Engineering ( IC2E ) conference Tempe AZ March 11 2015
  235. Bingjing Zhang, Yang Ruan, Judy Qiu Harp: Collective Communication on Hadoop IEEE International Conference on Cloud Engineering ( IC2E ) conference Tempe AZ March 11 2015
  236. Geoffrey Fox Classification of Big Data Applications and Implications for the Algorithms and Software Needed for Scalable Data Analytics 70th Annual Meeting of the ORAU Council of Sponsoring Institutions March 4-5, 2015, Oak Ridge, Tennessee Big Data Analytics: Challenges and Opportunities March 4 2015
  237. Geoffrey Fox Big Data Applications, Software, Hardware and Curricula Federal Big Data Working Group Meetup March 2 , 2015
  238. Geoffrey Fox Indiana University DMDII Digital Manufacturing and Design Innovation Institute Meeting Atlanta February 25 2015
  239. Saliya Ekanayake Towards a Systematic Approach to Big Data Benchmarking Indiana University PhD Thesis Proposal February 4 2015
  240. Geoffrey Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake Big Data Ogres and their Facets Workshop on Big Data and Extreme-scale Computing ( BDEC ) Barcelona Spain January 29-30 2015
  241. Geoffrey Fox HPC and Parallel Data Analytics at Big Data Status and Challenges panel January 28 2015. BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  242. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Cloudmesh: Software Defined Distributed Systems as a Service SDDSaaS January 27 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  243. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Sports Analytics January 27 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  244. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Looking At Individual HPCABDS Software Layers January 27 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  245. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Data Mining Runtime Software and Algorithms January 27 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  246. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Keynote January 27 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  247. Geoffrey Fox Big Data Tutorial on Mapping Big Data Applications to Clouds and HPC: Introduction January 26 2015 BigDat 2015: International Winter School on Big Data Tarragona, Spain, January 26-30, 2015
  248. Xiaoming Gao (Advisor Judy Qiu) Scalable Architecture for Integrated Batch and Streaming Analysis of Big Data Indiana University PhD Thesis Exam January 21 2015
  249. Geoffrey Fox, Judy Qiu, Shantenu Jha, Andre Luckow Ogres as Rotating Facets of a Diamond Internal Presentation January 11 2015
  250. IU(Fox, Qiu, Crandall, von Laszewski), Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State(Beckstein), Utah(Cheatham) CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science Internal Presentation Indiana University, December 18 2014
  251. Geoffrey Fox, David Crandall, Judy Qiu, Gregor von Laszewski Dibbs Research at Digital Science Center@SOIC Internal Presentation Indiana University, December 18 2014
  252. Geoffrey Fox HPC ABDS Architecture Internal Presentation December 18 2014
  253. Geoffrey Fox, Judy Qiu, Shantenu Jha Integrating the Apache Stack with HPC for Big Data AGU Fall meeting at Session IN025: Leveraging Enabling Technologies and Architectures to Enable Data Intensive Science II; Moscone Convention Center, San Francisco December 16 2014
  254. Hyungro Lee Ph.D. Qualifying Exam Indiana University, December 8, 2014
  255. Geoffrey Fox, David Crandall, Kris Hauser with students: Supun Kamburugamuve, Hengjing He, Jangwon Lee, Jingya Wang Cloud-Based Perception and Control of Sensor Nets and Robot Swarms AFOSR FA9550-13-1-0225 DDDAS Program Review IBM T.J. Watson Research Center December 3 2014
  256. Geoffrey Fox, Gregor von Laszewski Recipes for Success with Big Data using FutureGrid Cloudmesh SDSC Booth at SC14 Conference New Orleans November 19 2014
  257. Judy Qiu, Zhenghao Gu, Bingjing Zhang, Yang Ruan, Thomas Wiggins Data Analysis and Visualization Using HPC and Cloud Poster at Indiana University SOIC Booth at SC14 Conference New Orleans November 17-20 2014
  258. Geoffrey Fox, David Crandall, Judy Qiu, Gregor von Laszewski Data Science Research at Digital Science Center@SOIC Indiana University SOIC Booth at SC14 Conference New Orleans November 17-20 2014
  259. Geoffrey Fox SOIC Data Science Program Indiana University SOIC Booth at SC14 Conference New Orleans November 17-20 2014
  260. Geoffrey Fox, Judy Qiu Data Science Rearch and Education at Digital Science Center@SOIC Internal Presentation Indiana University November 5 2014
  261. Stefan Lee, Jerome E. Mitchell, David J. Crandall, and Geoffrey C. Fox Estimating Bedrock and Surface Boundaries with Confidence Intervals in Ice Sheet Radar Imagery Using MCMC IEEE International Conference on Image Processing (ICIP) Paris France October 27-30 2014
  262. Geoffrey Fox The State of Big Data: Use Cases and the Ogre patterns NIST Big Data Public Working Group, IEEE Big Data 2014, 014 IEEE NIST Big Data PWG Workshop , Bethesda Maryland, October 27, 2014
  263. Geoffrey Fox Data Science Research and Education with Bioinformatics Applications HITS 1110, IUPUI 23 October 2014
  264. Geoffrey Fox Collaborating on the DMDI Digital manufacturing and Design Innovation sl165 Engineering Conference Room, IUPUI 23 October 2014
  265. Judy Qiu Harp and Large-Scale Data Analysis Applications Intel visit to Indiana University October 22 2014
  266. Geoffrey Fox, Judy Qiu Data Science at Digital Science Center@SOIC Intel visit to Indiana University October 22 2014
  267. Geoffrey Fox Characteristics of Big Data Applications and Scalable Software Systems Chesapeake Large-Scale Analytics Conference Loews Annapolis Hotel Annapolis October 16 2014
  268. Geoffrey Fox Towards an Understanding of Facets and Exemplars of Big Data Applications 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday Annapolis October 14 2014
  269. Jerome E. Mitchell, Geoffrey C. Fox, and David J. Crandall Techniques for Estimating Layers from Polar Radar Imagery Poster CReSIS Reverse Site Visit NSF Washington DC October 7 2014
  270. Gregor von Laszewski Cloudmesh Resources Internal Presentation Indiana University October 1 2014
  271. Gregor von Laszewski Cloudmesh: a Gentle Overview Internal Presentation Indiana University October 1 2014
  272. Geoffrey Fox, Gregor von Laszewski Cloudmesh: Software Defined Distributed Systems as a Service SDDSaaS Presentation at Workshop on the Development of a Next-Generation, Interoperable, Federated Network Cyberinfrastructure, Washington DC October 1 2014
  273. Geoffrey Fox Indiana University Capabilities in Digital Manufacturing Digital Manufacturing and Design Innovation Institute (DMDII) meeting September 26, 2014
  274. Geoffrey Fox Scalable Data Analytics: Parallel Computing Reborn Vrije Universiteit Amsterdam September 24 2014
  275. Geoffrey Fox Data Analytics at Digital Science Center@SOIC Big Data Analytics Interest Group, Research Data Alliance RDA4 2014 Amsterdam September 22 2014
  276. Geoffrey Fox Data Science Curriculum at Indiana University EDISON Workshop at RDA4 Amsterdam September 21 2014 Slideshare
  277. Geoffrey Fox, Judy Qiu, Shantenu Jha What is the “Big Data” version of the Linpack Benchmark? What is “Big Data” version of Berkeley Dwarfs and NAS Parallel Benchmarks? presentation for Slideshare September 6 2014
  278. Judy Qiu Harp: Collective Communication on Hadoop Internal five minute madness talk at Indiana University September 5 2014
  279. Geoffrey Fox What is the “Big Data” version of the Linpack benchmark? –? (We will never get anywhere without one.) Clusters, Clouds, and Data for Scientific Computing workshop CCDSC 2014, Lyons (Châteauform’ La Maison des Contes 427 Chemin de Chanzé, France) September 3
  280. Geoffrey Fox Big Data to Knowledge Panel SKG 2014, 10th International Conference on Semantics, Knowledge and Grid, Institute of Computing Technology, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China August 29 2014
  281. Geoffrey Fox Extracting Knowledge with Data Analytics Keynote at SKG 2014, 10th International Conference on Semantics, Knowledge and Grid, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China August 28 2014
  282. SPIDAL MIDAS Archtecture Internal Presentation August 27 2014
  283. Geoffrey Fox Big Data Applications and their Software on Clouds and Supercomputers IV Chair Presentation with Poster Tsinghua University FIT Building Beijing August 25 2014
  284. Andrew Younge Advanced Virtualization Techniques for High Performance Cloud Cyberinfrastructure PhD Candidacy Exam Indiana University 21 August 2014
  285. Yang Ruan SCALABLE AND ROBUST DATA CLUSTERING AND VISUALIZATION PhD Defense Presentation Indiana University 18 August 2014
  286. Geoffrey Fox Scalable Algorithms in the Cloud I Microsoft Summer School Doing Research in the Cloud Moscow State University August 1 2014
  287. Geoffrey Fox Scalable Algorithms in the Cloud II Microsoft Summer School Doing Research in the Cloud Moscow State University August 4 2014
  288. Geoffrey Fox Scalable Algorithms in the Cloud III Microsoft Summer School Doing Research in the Cloud Moscow State University August 5 2014
  289. Geoffrey Fox Big Data at the Intersection of Clouds and HPC July 23 Keynote at The 2014 International Conference on High Performance Computing & Simulation (HPCS 2014) July 21 – 25, 2014 The Savoia Hotel Regency Bologna (Italy)
  290. Geoffrey Fox New Opportunities in High Performance Data Analytics (HPDA) and High Performance Computing (HPC) July 22 Panel at The 2014 International Conference on High Performance Computing & Simulation (HPCS 2014) July 21 – 25, 2014 The Savoia Hotel Regency Bologna (Italy)
  291. Geoffrey Fox Parallelizing Data Analytics July 10 2014, INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING From Clouds and Big Data to Exascale and Beyond Cetraro (Italy)
  292. Judy Qiu Harp: Collective Communication on Hadoop July 10 2014, INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING From Clouds and Big Data to Exascale and Beyond Cetraro (Italy)
  293. Geoffrey Fox Panel: Beyond Exascale Computing Panel Session July 9 2014, INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING From Clouds and Big Data to Exascale and Beyond Cetraro (Italy)
  294. Geoffrey Fox Returning to Java Grande: High Performance Architecture for Big Data July 7 2014, INTERNATIONAL ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING From Clouds and Big Data to Exascale and Beyond Cetraro (Italy)
  295. S Jha, J Qiu, A Luckow, P Mantha, Geoffrey Fox A Tale of Two Data-Intensive Paradigms: Applications, Abstractions and Architectures July 1 2014, Application and Experience track of 3rd International Congress on Big Data June 27 - July 2, 2014, Anchorage, Alaska, USA
  296. John Paul Walters, Andrew J. Younge, Dong-In Kang, Ke-Thia Yao, Mikyung Kang, Stephen P. Crago, and Geoffrey C. Fox GPU-Passthrough Performance: A Comparison of KVM, Xen, VMWare ESXi, and LXC for CUDA and OpenCL Applications June 30 2014 Applications & Industry Track paper presentation, 7th IEEE International Conference on Cloud Computing June 27 - July 2, 2014, Alaska, USA
  297. Geoffrey Fox Cloud Services for Big Data Analytics or Longer version June 27 2014 Second International Workshop on Service and Cloud Based Data Integration (SCDI 2014) Anchorage AK as part of IEEE 10th World Congress on Services June 27 - July 2, 2014, Anchorage, Alaska, USA Slideshare
  298. Gregor von Laszewski and Geoffrey Fox Selected lessons learned from FutureGrid resulting in a toolkit for ComputingTestbedaaS: Cloudmesh June 27 2014 High Performance Computing Symposium 2014 JUNE 25-27, 2014 HALIFAX, NOVA SCOTIA
  299. Geoffrey Fox Panel Discussion: Software Defined Ecosystems June 24 2014 BigSystem 2014 workshop - Software-Defined Ecosystems at HPDC Vancouver Canada
  300. Gregor von Laszewski Fugang Wang Geoffrey Fox (speaker) Accessing and Managing Multiple Clouds (Infrastructures) with Cloudmesh with longer version June 24 2014 BigSystem 2014 workshop - Software-Defined Ecosystems at HPDC Vancouver Canada
  301. Geoffrey Fox Matching Data Intensive Applications and Hardware/Software Architectures Presentation at Lawrence Berkeley National Laboratory June 19 2014 Slideshare
  302. Gregor von Laszewski Projects for REU Summer Students June 2 2014 Internal Meeting at Indiana University
  303. Thilina Gunarathne, Judy Qiu, Dennis Gannon Towards a Collective Layer in the Big Data Stack CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014
  304. Andrew Younge and Geoffrey Fox Advanced Virtualization Techniques for High Performance Cloud Cyberinfrastructure PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014
  305. Xiaoming Gao, Judy Qiu Supporting Queries and Analyses of Large-Scale Social Media Data with Customizable and Scalable Indexing Techniques over NoSQL databases PhD Student Session at CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014
  306. Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schütte, James D. Bever, Haixu Tang and Geoffrey Fox Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylogram Visualized in 3 Dimensions FIRST INTERNATIONAL WORKSHOP ON CLOUD FOR BIO (C4Bio 2014) to be held as part of CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing Chicago Illinois May 27-29 2014
  307. Bingjing Zhang, Yang Ruan Hadoop-Harp Applications Performance Analysis on Big Red II Indiana University Internal memo May 20 2014
  308. Andrew J. Younge, John Paul Walters, Stephen Crago, Geoffrey C. Fox Evaluating GPU Passthrough in Xen for High Performance Cloud Computing High-Performance Grid and Cloud Computing Workshop May 19, 2014, Phoenix, Arizona, USA in conjunction with International Parallel and Distributed Processing Symposium - IPDPS 2014
  309. Geoffrey Fox Comparing Big Data and Simulation Applications and Implications for Software Environments at eScience in the Cloud 2014 Redmond WA April 30 2014 Slideshare
  310. Thilina Gunarathne Scalable Parallel Computing on Clouds : Efficient and scalable architectures to perform pleasingly parallel, MapReduce and iterative data intensive computations on cloud environments Indiana University PhD defense April 21 2014
  311. Geoffrey Fox High Performance Data Analytics and a Java Grande Run Time Rice University April 18 2014 Slideshare
  312. Justin Deloatch Utilizing HUBzero to Create and Test an Educational Hub from CReSIS Educational Data April 17 Elizabeth City State University REU project presentation
  313. Thilina Gunarathne Scalable Parallel Computing on Clouds : Efficient and scalable architectures to perform pleasingly parallel, MapReduce and iterative data intensive computations on cloud environments Internal details of Research
  314. Geoffrey Fox, Judy Qiu and Shantenu Jha HPC-ABDS: The Case for an Integrating Apache Big Data Stack with HPC Internal details of Research
  315. Yang Ruan SCALABLE AND ROBUST DIMENSION REDUCTION AND CLUSTERING April 16 Presentation Indiana University
  316. Binjing Zhang A Brief Introduction of Existing Big Data Tools April 16 Presentation Indiana University
  317. SALIYA EKANAYAKE Towards High Performance Data Analytics with Java April 16 Presentation Indiana University
  318. Saliya Ekanayake High Performance Machine Learning Using Java Indiana University Poster Session April 11 2014
  319. Supun Kamburugamuve IoTCloud Platform – Connecting Sensors to Cloud Services Indiana University Poster Session April 11 2014
  320. Yang Ruan Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions Indiana University Poster Session April 11 2014
  321. Geoffrey Fox Multi-faceted Classification of Big Data Uses and Proposed Architecture Integrating High Performance Computing and the Apache Stack Sixth International Workshop on Cloud Data Management CloudDB 2014 Chicago March 31 2014 Slideshare
  322. Geoffrey Fox for Data Science Program Master of Arts in Data Science Internal Indiana University Summary March 31 2014
  323. Xiaoming Gao Supporting Queries and Analyses of Large-Scale Social Media Data with Customizable and Scalable Indexing Techniques over NoSQL databases PhD Proposal Presentation Indiana University March 26 2013
  324. Adam Szczepaniak and Geoffrey Fox Discovering New Particles with Cloud Computing Indiana University internal IUCRG Presentation March 25 2014
  325. Geoffrey Fox for Data Science Program Master of Arts in Data Science Internal Indiana University Meeting March 23 2014
  326. Geoffrey Fox, Judy Qiu and Shantenu Jha Looking at Use Case 19, 20 Genomics Presentation at 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014
  327. Judy Qiu, Shantenu Jha and Geoffrey Fox HPC-ABDS: The Case for an Integrating Apache Big Data Stack with HPC Presentation at 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014 Slideshare
  328. Geoffrey Fox, Judy Qiu and Shantenu Jha Understanding Big Data Applications and Architectures Presentation at 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014 Slideshare
  329. Ilkay Altintas (presenter), Geoffrey Fox Big Data Use Cases and Requirements Presentation at 1st JTC 1 SGBD Meeting , SDSC San Diego March 19 2014
  330. Yang Ruan DACIDR for Gene Analysis Internal Group Review March 2014
  331. Tak-Lon (Stephen) Wu Using Pig with Scientific Applications and IndexedHBase for Social Media Data Queries Internal Group Review March 2014
  332. Bingjing Zhang Harp Iterative MapReduce for Hadoop Internal Group Review March 2014
  333. Saliya Ekanayake Evaluation of Java Message Passing in High Performance Data Analytics Internal Group Review March 2014
  334. Xiaoming Gao Supporting Large-scale Social Media Data Analyses with Customizable Indexing Techniques on NoSQL Databases Internal Group Review March 2014
  335. Scott McCaulay and Geoffrey Fox Distributed Indexed Outlier Detection Algorithm Internal Presentation Indiana University March 11 2014
  336. Geoffrey Fox, Judy Qiu and Shantenu Jha 51 Use Cases and implications for HPC & Apache Big Data Stack Architecture and Ogres and 4 page version with posted High Performance High Functionality Big Data Software Stack talk and white paper , International Workshop on Extreme Scale Scientific Computing (Big Data and Extreme Computing (BDEC)) Fukuoka Japan February 27 2014 Slideshare
  337. Jerome Mitchell Optimization Techniques and the Detection Layer Boundaries in Polar Radar Imagery PhD Qualifying Exam Presentation Indiana University January 24 2014
  338. Gregor von Laszewski (IU), Fugang Wang (IU), Geoffrey C. Fox (IU), Steve Gallo (UB) & Tom Furlani (UB) XSEDE TAS Scientific Impact and FutureGrid Lessons Presentation: Improving the Link Between Publications & User Facilities, ORNL, Thursday, Jan-9-2014
  339. Geoffrey Fox Big Data Use Cases December 26 2013 Internal Presentation Indiana University
  340. Yang Ruan SCALABLE AND ROBUST DIMENSION REDUCTION AND CLUSTERING PhD Proposal Presentation Indiana University December 20 2013
  341. Supun Kamburugamuve Big Data, Stream Processing & Algorithms PhD Qualifying Exam Presentation Indiana University December 19 2013
  342. Judy Qiu IU MOOC Presentation at SC13 Birds of a Feather November 20 2013
  343. Geoffrey Fox Remarks on MOOC's Presentation at SC13 Birds of a Feather November 20 2013
  344. Geoffrey Fox FutureGrid Connection to Comet: Testbed and On Ramp as a Service presentation at Opening of Comet SDSC computer at SC13 November 19 2013
  345. Judy Qiu Analysis Tools for Data Enabled Science Invited talk at 6th Workshop on Many-Task Computing on Clouds, Grids, and Supercomputers (MTAGS), Nov. 17, 2013
  346. Judy Qiu, Generalizing MapReduce as a Unified Cloud and HPC Runtime , Rutgers ECE Colloquium , October 10, 2013
  347. Geoffrey Fox NIST Big Data Public Working Group NBD-PWG and with data size slide at CCL Workshop October 11 2013 Notre Dame University Slideshare
  348. Geoffrey Fox NIST Big Data Public Working Group NBD-PWG“Big Data Funding Program Panel: Challenging and Opportunities” October 9 2013 IEEE International Conference on Big Data 2013 (IEEE BigData 2013) Santa Clara CA
  349. Geoffrey Fox, D. R. Mani, Saumyadipta Pyne Parallel Deterministic Annealing Clustering and its Application to LC-MS Data Analysis October 7 2013 IEEE International Conference on Big Data 2013 (IEEE BigData 2013) Santa Clara CA
  350. Geoffrey Fox NIST Big Data Public Working Group NIST Big Data Public Working Group, Big Data workshop NIST Campus September 30 2013
  351. Geoffrey Fox Data Science Dean's Advisory Council Bloomington IN September 27 2013
  352. Hui Li Co-processing SPMD Computation on GPUs and CPUs cluster IEEE Cluster Conference Indianapolis September 24 2013
  353. Judy Qiu Twister: Iterative MapReduce Tutorial at IEEE Cluster Conference Indianapolis September 23 2013
  354. Geoffrey Fox and Gregor von Laszewski for FutureGrid Team FutureGrid Computing Testbed as a Service EGI Technical Forum 2013 Madrid Spain September 17 2013 Slideshare
  355. Gregor von Laszewski CloudMesh Internal Presentation Bloomington Indiana September 16 2013
  356. Gregor von Laszewski A Dynamic Provisioning System for Federated Cloud and Bare-metal Environments Presentation to Lockheed Martin September 12 2013
  357. David Crandall, Jerome Mitchell, Geoffrey C. Fox, John D. Paden Automatic Identification of Ice Layers in Radar Echograms Invited Talk at INTERNATIONAL GLACIOLOGICAL SOCIETY International Symposium on Radioglaciology Lawrence, Kansas, USA, 9–13 September 2013
  358. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, and John D. Paden A Survey of Techniques for Detecting Layers in Polar Radar Imagery INTERNATIONAL GLACIOLOGICAL SOCIETY International Symposium on Radioglaciology Lawrence, Kansas, USA, 9–13 September 2013
  359. Maryam Rahnemoonfar and Geoffrey Fox Ice Layer Detection from RADAR Depth Sounder Data using Novel Approach based on Theory of Electrostatics INTERNATIONAL GLACIOLOGICAL SOCIETY International Symposium on Radioglaciology Lawrence, Kansas, USA, 9–13 September 2013
  360. Geoffrey Fox Big Data in the Cloud: Research and Education PPAM 10TH INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING AND APPLIED MATHEMATICS 2013 Warsaw September 9 2013 Slideshare
  361. Geoffrey Fox Data Science and Clouds MURPA/QURPA Melbourne /Queensland/Brisbane Virtual Presentation August 23 2013
  362. Saliya Ekanayake Overview of MDS and Sequence Clustering Internal Presentation Bloomington Indiana August 23 2013
  363. Geoffrey Fox Tools in SPIDAL: Scalable Parallel Interoperable Data Analytics Library Large Scale Data Analytics Workshop Indiana University August 9 2013
  364. Geoffrey Fox 2020-2025 Scientific Computing Environments ( Distributed Computing in an Exascale era) NITRD MAGIC meeting August 7 2013
  365. Tak-Lon (Stephen) Wu Study of MapReduce for Data Intensive Applications, NoSQL Solutions, and a Practical Provisioning Interface for IaaS Cloud Indiana University July 29 2013
  366. Geoffrey Fox Remarks on MOOC’s Open Grid Forum OGF38B BOF Session July 24 2013 at XSEDE 13 Meeting San Diego July 22-25 2013 Slideshare
  367. Geoffrey Fox and Gregor von Laszewski for FutureGrid Team FutureGrid FutureGrid Users Advisory Board Meeting July 24 2013 at XSEDE 13 Meeting San Diego July 22-25 2013
  368. Gregor von Laszewski Fugang Wang Steve Gallo Tom Furlani XSEDE TAS Scientific Impact Framework XSEDE 13 Meeting San Diego July 22-25 2013
  369. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, John D. Paden A Semi-Automatic Approach for Estimating Near Surface Internal Layers From Snow Radar Imagery IGARSS IEEE International Geoscience and Remote Sensing Symposium 2013 Session FR2.105 – Image Processing I Melbourne, Australia July 21 2013
  370. FutureGrid Team FutureGrid Quick Summary July 18 2013
  371. Geoffrey Fox Optimization Indiana University July 12 2013
  372. FutureGrid Team FutureGrid Computing Testbed as a Service: Details July 3 2013 Updated September 15 2013
  373. FutureGrid Team FutureGrid Computing Testbed as a Service: Overview July 3 2013 Updated September 15 2013
  374. Geoffrey Fox Data Science and the Cloud; Centerpieces of the Future Economy June 14 2013 Indiana University Mini University. Updated on Slideshare January 5 2014. See later for November 25 2014 version
  375. Geoffrey Fox Big Data and Clouds Cloud Material Resource June 12 2013
  376. Geoffrey Fox Cloud Computing and Large Scale Computing in the Life Sciences: Opportunities for Large Scale Sequence Processing NGS-Translate World Forum Hyatt Regency Cambridge MA May 30 2013
  377. Geoffrey Fox Collaboration in the Cloud and online education environments The 2013 International Conference on Collaboration Technologies and Systems CTS2013 ( CTS 2013 ) May 20-24, 2013 The Sheraton San Diego Hotel & Marina San Diego, California, USA, May 22 2013
  378. Geoffrey Fox Conference Opening The 2013 International Conference on Collaboration Technologies and Systems CTS2013 ( CTS 2013 ) May 20-24, 2013 The Sheraton San Diego Hotel & Marina San Diego, California, USA, May 21 2013
  379. Geoffrey Fox Training Data Scientists DELSA Workshop IV May 16-17, 2013 DoubleTree Bethesda, Bethesda, MD
  380. Geoffrey Fox Iterative MapReduce and High Performance Datamining Seminar Forschungszentrum Juelich GmbH Germany May 8 2013
  381. Geoffrey Fox Data Science, Clouds and X-Informatics Keynote at 3rd International Conference on Cloud Computing and Services Science, CLOSER 2013 Aachen Germany 8-10 May 2013
  382. Geoffrey Fox Future Challenges of Cloud Computing and Web Technologies (with a Big Data slant) Panel Presentation at 3rd International Conference on Cloud Computing and Services Science, CLOSER 2013 Aachen Germany 8-10 May 2013
  383. Geoffrey Fox Big Data and Clouds Cloud Material Resource May 7 2013
  384. Judy Qiu Data Intensive Clouds Tools and Applications School of Informatics and Computing Presentation May 2 2013
  385. Geoffrey Fox Remarks on Big Data Clustering (and its visualization) Big Data and Extreme-scale Computing (BDEC) Meeting Charleston SC May 1 2013
  386. David J. Crandall, Geoffrey C. Fox, John D. Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models Radio Echo Sounding Tracing Workshop, Centre for Ice and Climate, Copenhagen, Denmark May 6 2013
  387. Jerome E. Mitchell, David J. Crandall, Geoffrey C. Fox, John D. Paden (Semi) Automatically Detecting Layers From Polar Radar Imagery Radio Echo Sounding Tracing Workshop, Centre for Ice and Climate, Copenhagen, Denmark May 6 2013
  388. Geoffrey Fox Remarks on Cyberinfrastructure and Climate Change from a Polar Science Point of View Earlham College Hackathon April 27 2013
  389. Jerome E. Mitchell CReSIS Data Processing and Analysis CReSIS review April 24 2013 Elizabeth City University
  390. Jose Fortes for FutureGrid Team (based on content provided by Geoffrey Fox) FutureGrid Computing Testbed as a Service for Condo_of_Condos Internet 2 panel April 22 2013
  391. Geoffrey Fox Contributions to Data Science and Clouds Digital Science Center Presentation April 18 2013
  392. Geoffrey Fox Overview of Cyberinfrastructure and The Breadth of Its Application Cyberinfrastructure Day Claflin University Orangeburg SC April 12 2013
  393. Geoffrey Fox Big Data and Clouds resource with Abstract April 18 2013
  394. Geoffrey Fox FutureGrid Computing Testbed as a Service: NSF Presentation or shorter Presentation NSF April 9 2013
  395. Saliya Ekanayake Study of Biological Sequence Structure: Clustering and Visualization & Survey on High Productivity Computing Systems (HPCS) Languages Indiana University PhD Qualifying exam March 11 2013
  396. Andrea Donnellan, Margaret Glasscoe, Jay Parker, Robert Granat (JPL) Marlon Pierce, Jun Wang, Geoffrey Fox (Indiana University) Dennis McLeod (University of Southern California) John Rundle, Eric Heien (UC Davis) Lisa Grant Ludwig (UC Irvine) Integrating Remotely Sensed and Ground Observations for Modeling, Analysis, and Decision Support 2013 IEEE Aerospace Conference Big Sky Montana Mar 2-9 2013
  397. Geoffrey Fox Health Informatics, Big Data, Clouds, Data Analytics February 28 2013 and March 7 2013 in I400 Health Informatics class
  398. Gregor von Laszewski, Javier Diaz, Fugang Wang, Koji Tanaka, Hyungro Lee, Geoffrey C. Fox FutureGrid RAIN: More than Dynamic Provisioning Across Virtual and Bare-metal Resources Indiana University presentation March 7 2013
  399. Hui Li A MapReduce Framework on Heterogeneous Systems Indiana University February 22 2013
  400. Geoffrey Fox Big Data and Clouds: Challenges and Opportunities MAGIC Telecon on Clouds and Testbeds February 6 2013
  401. Hui Li System Center 2012 Setup Indiana University January 18 2013
  402. Geoffrey Fox Big Data and Clouds: Challenges and Opportunities Panel on “Convergence of Cloud and Big Data” Comments at NIST Cloud Computing and Big Data Forum and Workshop January 15 2013
  403. Tak-Lon (Stephen) Wu salsaDPI: A Dynamic Provisioning Interface for IaaS Presentation Indiana University January 11 2013
  404. Tao Huang Building a Scalable Framework for the Collaborative Annotation of Real Time Data Streams PhD Defense Presentation Indiana University January 11 2013
  405. Geoffrey Fox Data Analytics: Clouds, Algorithms, and Curricula CDAC Centre for Development of Advanced Computing Pune India December 20 2012
  406. Geoffrey Fox Big Data and Clouds: Computing, Analytics and Curriculum Persistent Systems Headquarters Pune India December 20 2012
  407. Gregor von Laszewski Introduction to FutureGrid: Towards a Computing Testbed as a Service INCISE 2 Instrumentation-as-a-Service for Computer and Information Science and Engineering Workshop in Miami, Florida December 5-6 2012
  408. José A.B. Fortes, Geoffrey Fox and Gregor von Laszewski Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing Introduction to Birds of a Feather on Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012
  409. Hari.Kannan Citrix CloudStack for Testbeds Birds of a Feather on Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012
  410. Qian Depei Status of CNGrid and Interests on International Testbed Birds of a Feather on Computing Research Testbeds as a Service: Supporting large scale Experiments and Testing November 13 2012 at SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012
  411. Jonathan Klinginsmith and Judy Qiu Reproducibility and Scalability in Experimentation through Cloud Computing Technologies Doctoral Showcase November 14 2012 SC12 International Conference for High Performance Computing, Networking, Storage and Analytics, Salt Lake City Utah November 10-16 2012
  412. David Crandall, Geoffrey Fox, John Paden Layer-finding in Radar Echograms using Probabilistic Graphical Models presentation at twenty-first conference of the International Association for Pattern Recognition (IAPR), November 11-15, 2012 at the Tsukuba International Congress Center, Tsukuba, Japan
  413. Hui Li Performance Model for Parallel Matrix Multiplication with Dryad: Dataflow Graph Runtime 2012 International Symposium on Big Data and MapReduce (BigDataMR2012) 01-03 November 2012, Xiangtan, Hunan, China
  414. Andrew Younge The State of Cloud Computing in Distributed Systems PhD Qualifying Exam Presentation November 1 2012
  415. Geoffrey Fox Large Scale Data Analytics on Clouds Keynote at CloudDB '12 fourth international workshop on Cloud data management Pages 21-24 October 29 2012 Sheraton Maui
  416. Geoffrey Fox ACES and Clouds October 24 2012 APEC Cooperation for Earthquake Simulation (ACES) 8th International Workshop Advances in Simulation of Multihazards Maui, Hawaii, October 23-26, 2012
  417. Geoffrey Fox Big Data in Research and Education keynote at Symposium on Big Data Science and Engineering Metropolitan State University, Minneapolis/St. Paul, Minnesota October 19 2012
  418. Geoffrey Fox and Russell Funk Proposed Project on Microsoft Academic Search at Internet2-Microsoft Workshop on CyberInfrastructure for the Social Sciences University of Washington, Seattle, October 15-16 2012
  419. Geoffrey Fox Cyberinfrastructure Supporting Social Science October 16 2012 at Internet2-Microsoft Workshop on CyberInfrastructure for the Social Sciences University of Washington, Seattle, October 15-16 2012
  420. Geoffrey Fox Data Analytics and its Curricula Microsoft eScience workshop October 9 2012 at 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012
  421. Geoffrey Fox Data Analytics and its Curricula Delsa workshop October 9 2012 at 8th IEEE International Conference on eScience (eScience 2012) Hyatt Regency Chicago, Chicago, Illinois, 8-12 October 2012
  422. Gregor von Laszewski and Tom Hacker Cloud Computing for K-12 Purdue one day workshop on Introduction to High Performance and Cloud Computing for K-12 Teachers and Students West Lafayette Indiana October 5 2012
  423. Ruan Yang DACIDR: A Deterministic Annealing Clustering and Interpolative Dimension Reduction Method ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB) Orlando Florida October 7-10 2012
  424. Hui Li Co-processing SPMD Computation on GPUs and CPUs with MapReduce Interface on Shared Memory System Internal Presentation Indiana University October 5 2012
  425. Geoffrey Fox Proteomics Metagenomics and Deterministic Annealing CREST Presentation Indiana University October 5 2012
  426. Geoffrey Fox Data Analytics: Curricula and Clouds Clemson University September 21 2012
  427. Geoffrey Fox Robust Parallel Clustering Algorithms CCDSC workshop on Clusters, Clouds, and Data for Scientific Computing La Maison des Contes Lyon France September 13 2012
  428. Zhenhua Guo High Performance Integration of Data Parallel File Systems and Computing: Improving MapReduce PhD Thesis presentation August 31 2012
  429. Geoffrey Fox J. Fortes G. von Laszewski FutureGrid Computing Testbed as a Service Internal presentation August 23 2012
  430. Hui Li and Geoffrey Fox Panda: MapReduce Framework on GPU’s and CPU’s Indiana University August 10 2013
  431. Geoffrey Fox Scalable Deep Analytics on Cloud and High Performance Computing Environments NASA SACD (Systems Analysis and Concepts Directorate) Lecture Series on Complex Systems and Deep Analytics NASA Langley Research Center Building 1209, Room 180 Conference Room, August 8 2012
  432. Geoffrey Fox Science Clouds and CFD Invited Talk at NIA CFD Conference : Future Directions in CFD Research, A Modeling and Simulation Conference August 6-8, 2012 Embassy Suites Hampton Roads - August 6 2012
  433. Andrew J. Younge Indiana University (USC / Information Sciences Institute) GPUs on Clouds Presentation at Science Cloud Summer School organized by VSCSE August 3 2012
  434. Javier Diaz, Koji Tanaka, Gregor von Laszewski FutureGrid Move Presentation at Science Cloud Summer School organized by VSCSE August 1 2012
  435. Javier Diaz, Gregor von Laszewski FutureGrid Image Management and Rain Presentation at Science Cloud Summer School organized by VSCSE August 1 2012
  436. Javier Diaz, Gregor von Laszewski OpenStack and Eucalyptus on FutureGrid Presentation at Science Cloud Summer School organized by VSCSE August 1 2012
  437. Thilina Gunarathne Twister4Azure: Iterative MapReduce for Windows Azure Cloud Presentation at Science Cloud Summer School organized by VSCSE August 1 2012
  438. Roger Barga (Microsoft), Thilina Gunarathne (Indiana University), Windows Azure Cloud Presentation at Science Cloud Summer School organized by VSCSE August 1 2012
  439. Judy Qiu, Bingjing Zhang Twister Tutorial Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  440. Hui Li, Judy Qiu High Level Language: Pig Latin Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  441. Xiaoming Gao, Hui Li, Thilina Gunarathne Apache Hbase Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  442. Jerome Mitchell Good Ole Hadoop! How We Love Thee! Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  443. Tak-lon (Stephen) Wu Reproducible Environment for Scientific Applications (Lab session) Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  444. Jonathan Klinginsmith Virtual Clusters Supporting MapReduce in the Cloud Presentation at Science Cloud Summer School organized by VSCSE July 31 2012
  445. Geoffrey Fox FutureGrid Overview for VSCSE Summer School on Science Clouds Presentation at Science Cloud Summer School organized by VSCSE July 30 2012
  446. Geoffrey Fox Introduction to Clouds and the VSCSE Summer School on Science Clouds Presentation at Science Cloud Summer School organized by VSCSE July 30 2012
  447. Geoffrey Fox Cyberinfrastructure for eScience and eBusiness from Clouds to Exascale Keynote presentation ( Short Version ) at ICETE 2012 Joint Conference on e-Business and Telecommunications Hotel Meliá Roma Aurelia Antica, Rome, Italy July 27 2012
  448. Geoffrey Fox Remarks on Clouds and Security Panel on Recent Advances in the Security of Telecommunication and Network Systems at ICETE 2012 Joint Conference on e-Business and Telecommunications Hotel Meliá Roma Aurelia Antica, Rome, Italy July 24 2012
  449. Geoffrey Fox and FutureGrid Team FutureGrid Highlights July 23 2012
  450. Geoffrey Fox Computing Testbeds as a Service NSF INCISE 2 workshop on Instrumentation for Computer Science July 21 2012 Snowbird Utah
  451. Judy Qiu MapReduce and Data Intensive Applications July 18 2012 BOF Session at XSEDE'12 conference July 16-20, 2012 InterContinental (Magnificent Mile) Hotel Chicago
  452. Geoffrey Fox Some remarks on Use of Clouds to Support The Long Tail of Science July 18 Panel on the Long Tail of Science at XSEDE'12 conference July 16-20, 2012 InterContinental (Magnificent Mile) Hotel Chicago
  453. Renato Figueiredo, Geoffrey Fox, Barbara Ann O’Leary Hosting Cloud, HPC and Grid Educational Activities on FutureGrid with Abstract July 17 2012 BOF Session at XSEDE'12 conference July 16-20, 2012 InterContinental (Magnificent Mile) Hotel Chicago
  454. Jerome E. Mitchell, Judy Qiu, Massimo Canonio, Shantenu Jha, Linda Hayden, Barbara Ann O’Leary, Renato Figueiredo, Geoffrey Fox FutureGrid Education: Using Case Studies to Develop A Curriculum for Communicating Parallel and Distributed Computing Concepts Paper Paper July 17 2012 XSEDE'12 conference July 16-20, 2012 InterContinental (Magnificent Mile) Hotel Chicago
  455. Geoffrey Fox and FutureGrid Team FutureGrid Overview July 16 2012 FutureGrid User Advisory Board at XSEDE'12 conference July 16-20, 2012 InterContinental (Magnificent Mile) Hotel Chicago
  456. Geoffrey Fox Science Clouds and Their Use in Data Intensive Applications July 12 2012 Keynote at The 10th IEEE International Symposium on Parallel and Distributed Processing with Applications ISPA2012 Leganés, Madrid, 10-13 July 2012
  457. Geoffrey Fox Science Clouds and Their Innovative Applications or Shorter version 2012 Second International Workshop FICC2012 on Cloud Computing and Future Internet July 9 and 10, 2012, 2nd Floor Conf. Rm, FIT Building Tsinghua University, Beijing, China
  458. Geoffrey Fox Digital Science Center Overview Presentation at Beihang University, Beijing Collaboration Meeting July 8 2012
  459. Judy Qiu Scientific Data Analytics on Cloud and HPC Platforms Invited talk at HPC 2012 Conference at Cetraro, Italy June 28 2012
  460. Geoffrey Fox FutureGrid Overview Invited talk at HPC 2012 Conference at Cetraro, Italy June 28 2012
  461. Andrew J. Younge FutureGrid: A Distributed High Performance Test-bed for Clouds Presentation at ISI East (USC) June 26 2012
  462. Javier Diaz, Gregor von Laszewski, Fugang Wang and Geoffrey Fox Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures Presentation at IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA
  463. Gregor von Laszewski, Javier Diaz, Fugang Wang, Geoffrey C. Fox Comparison of Multiple Cloud Frameworks Presentation at IEEE CLOUD 2012 5th International Conference on Cloud Computing June 24-29 2012, Hyatt Regency Waikiki Resort and Spa, Honolulu, Hawaii, USA
  464. Geoffrey Fox Scientific Computing Supported by Clouds, Grids and HPC(Exascale) Systems Invited talk at HPC 2012 Conference at Cetraro, Italy June 25 2012
  465. Geoffrey Fox Summary of S-Matrix and Regge Theory Lessons for PWA at International Workshop on Analysis Tools for next generation Hadron Spectroscopy (ATHOS2012) Hotel Cenobio dei Dogi, Camogli, Italy June 20-22 2012
  466. Geoffrey Fox Multiparticle Partial Wave Analysis: From Regge Theory and Duality to the Cloud Introductory invited talk June 20 2012 at International Workshop on Analysis Tools for next generation Hadron Spectroscopy (ATHOS2012) Hotel Cenobio dei Dogi, Camogli, Italy June 20-22 2012
  467. Geoffrey Fox Directions in eScience Interoperability and Science Clouds Presentation June 19 2012 at “Interoperability in Action – Standards Implementation in VENUS-C & the context of the SIENA Roadmap” session at OGF35 workshop of ACM HPDC 2012 conference at Delft the Netherlands
  468. Geoffrey Fox Science Clouds and FutureGrid’s Perspective Presentation June 18 2012 at Science Clouds Workshop of ACM HPDC 2012 conference at Delft the Netherlands
  469. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality and Fairness in MapReduce Presented at the Third International Workshop on MapReduce and its Applications (MAPREDUCE'12) of ACM HPDC 2012 conference at Delft the Netherlands
  470. Eugene Kolker, presented by Geoffrey Fox Introduction to DELSA and DEAP June 18 2012 at Panel Session “The Challenges at the Interface of Life Sciences and Cyberinfrastructure and how should we tackle them?” at Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 of ACM HPDC 2012 conference at Delft the Netherlands
  471. Judy Qiu Introduction and Statement Presentation June 18 2012 at Panel Session “The Challenges at the Interface of Life Sciences and Cyberinfrastructure and how should we tackle them?” at Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 of ACM HPDC 2012 conference at Delft the Netherlands
  472. L.Stanberry, R.Higdon, W.Haynes, N.Kolker, W.Broomall, S.Ekanayake, A.Hughes, Yang Ruan, J.Qiu, E.Kolker, G.Fox (presenter) Visualizing the Protein Sequence Universe or longer version June 18 2012 Presentation at Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 of ACM HPDC 2012 conference at Delft the Netherlands
  473. Yang Ruan, Zhenhua Guo (presenter), Yuduo Zhou, Judy Qiu, Geoffrey Fox Hybrid MapReduce Workflow June 18 2012 Presentation at Emerging Computational Methods for the Life Sciences Workshop ECMLS2012 of ACM HPDC 2012 conference at Delft the Netherlands
  474. Geoffrey Fox Science Applications on Clouds and FutureGrid Cloud and Autonomic Computing Center Spring 2012 Workshop Cloud Computing: from Cybersecurity to Intercloud University of Florida Gainesville June 14 2012 with longer versions Science Applications on Clouds and FutureGrid Overview
  475. Geoffrey Fox, Sidd Maini, Barbara O'Leary for QuakeSim EarthCube and Social Media/Networking EarthCube Governance group meeting SURA 1201 New York Avenue NW, Washington DC
  476. Seung-Hee Bae, Judy Qiu, and Geoffrey C. Fox Adaptive Interpolation of Multidimensional Scaling International Conference on Computational Science ICCS Omaha Nebraska June 4-6 2012
  477. Geoffrey Fox Big Data Architectures May 23 2012 Presentation at Panel on Exploiting Big Data in Collaboration Initiatives at The 2012 International Conference on Collaboration Technologies and Systems ( CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA
  478. Tao Huang and Geoffrey Fox Collaborative Annotation of Real Time Streams on Android-Enabled Devices May 22 2012 Presentation at Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications ( IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems ( CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA
  479. Ryan Hartman Architecture and Measured Characteristics of a Cloud Based Internet of Things May 22 2012 Presentation at Workshop 13-IoT Internet of Things, Machine to Machine and Smart Services Applications ( IoT 2012 ) at The 2012 International Conference on Collaboration Technologies and Systems ( CTS 2012) May 21-25, 2012 The Westin Westminster Hotel Denver, Colorado, USA
  480. Geoffrey Fox What is FutureGrid Overview May 16 2012
  481. Zhenhua Guo, Geoffrey Fox, Mo Zhou Investigation of Data Locality in MapReduce May 15 2012 Presentation at CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada
  482. Geoffrey Fox Clouds for Sensors and Data Intensive Applications May 13 2012 Presentation at 1st International Workshop on Data-intensive Process Management in Large-Scale Sensor Systems ( DPMSS 2012 ): From Sensor Networks to Sensor Clouds at CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing May 13-16, 2012, Ottawa, Canada
  483. Alex Ho and Geoffrey Fox Distributed Clouds for Scalable Collaborative Sensor-Centric Grid Applications AMSA TO 4 Sensor Grid Final Presentation Dayton OH May 9 2012
  484. Ryan Hartman and Geoffrey Fox Advanced Technology for Sensor Clouds AMSA TO 4 Sensor Grid Final Presentation Dayton OH May 9 2012
  485. Judy Qiu and Thilina Gunarathne Twister4Azure: Parallel Data Analytics on Azure May 8 Presentation at Cloud Futures 2012: Hot Topics in Research and Education, Berkeley CA May 7-8 2012
  486. Geoffrey Fox and Dennis Gannon Programming Models for Technical Computing on Clouds and Supercomputers (aka HPC) May 7 Presentation at Cloud Futures 2012: Hot Topics in Research and Education, Berkeley CA May 7-8 2012
  487. Geoffrey Fox New Modes of Business and Innovation May 3 2012 Panel Action Team-I: New Modes of Business and Innovation at DELSA (Data-Enabled Life Sciences Alliance International) workshop“Supporting Ecosystem for the Life Sciences in the Beginning of the 21st Century”, May 3-4 2012 Bethesda Doubletree Hotel, Bethesda, MD
  488. SALSA Group Data Enabled Science Indiana University Presentation April 29 2012
  489. Bingjing Zhang MapReduce, Collective Communication, and Services Oral Exam April 26 2012 Indiana University
  490. Gregor von Laszewski, Sharif Islam, Javier Diaz, and Geoffrey Fox Eucalyptus on FutureGrid: A case for Eucalyptus 3 Indiana Unversity Customer Story at Eucadays New York City April 25 2012
  491. Thilina Gunarathne Scalable Parallel Computing on Clouds Dissertation Proposal April 23 2012 Indiana University
  492. Geoffrey Fox Deterministic Annealing Dimension Reduction and Biology Indiana University Environmental Genomics April 20 2012
  493. Gregor von Laszewski, S. Crago, Kate Keahey, T. Omtzigt, and B. Renski OpenStack Conference: Panel on Cloud and HPC (No slides) at OpenStack Design Summit & Conference San Francisco 2012 April 16-20 2012 San Francisco
  494. Geoffrey Fox CReSIS Cyberinfrastructure NSF Virtual Review Indiana University April 4 2012
  495. Sidd Maini and Geoffrey Fox OpenQuake Social Networking for EarthCube Earthcube Governance Group meeting April 4-5 2012 Denver Colorado
  496. Geoffrey Fox Clouds from FutureGrid’s Perspective Large Scale Network (LSN) Middleware And Grid Infrastructure Coordination ( MAGIC ) Team Telecon April 4 2012
  497. Geoffrey Fox CReSIS Cyberinfrastructure Advisory Board Meeting Lawrence Kansas April 2 2012
  498. Geoffrey Fox Research and School of Informatics and Computing Student Presentation March 29 2012 Indiana University
  499. SALSA Group Data Enabled Science Indiana University Presentation February 27 2012
  500. Geoffrey Fox Advances in Clouds and their application to Data Intensive problems University of Southern California Seminar February 24 2012
  501. Zhenhua Guo High Performance Integration of Data Parallel File Systems and Computing Indiana University PhD Proposal February 10 2012
  502. Marlon Pierce, Geoffrey Fox IU QuakeSim/E-DECIDER Effort February 8 2012
  503. Geoffrey Fox Deterministic Annealing Indiana University Theory Group Talk January 23 2012
  504. Seung-Hee Bae Scalable High Performance Dimension Reduction Indiana University PhD Thesis Defense, January 17, 2012
  505. School of Informatics and Computing Research Regenstrief Meeting Indianapolis January 13 2012
  506. School of Informatics and Computing Researchers Regenstrief Meeting Indianapolis January 13 2012
  507. Jong Youl Choi Unsupervised Learning Of Finite Mixture Models With Deterministic Annealing For Large-scale Data Analysis Indiana University PhD Thesis Defense, January 12, 2012
  508. Geoffrey Fox FutureGrid and Data Intensive Applications on Clouds Presentation at Peking University, Beijing, China, December 23 2011
  509. Geoffrey Fox FutureGrid Overview Presentation at National Laboratory for Information Science and Technology, FIT Building, Tsinghua University, Beijing, China December 22 2011
  510. Geoffrey Fox Clouds for Simulation and Data Enabled Scientific Discovery Presentation at National Laboratory for Information Science and Technology, FIT Building, Tsinghua University, Beijing, China December 22 2011
  511. Geoffrey Fox Deterministic Annealing and Robust Scalable Data mining for the Data Deluge Presentation at National Laboratory for Information Science and Technology, FIT Building, Tsinghua University, Beijing, China December 22 2011
  512. Geoffrey Fox Geoinformatics and Data Intensive Applications on Clouds International Collaborative Center for Geo-computation Study (ICCGS) and shorter version at The 1st Biennial Advisory Board Meeting State Key Lab of Information Engineering in Surveying Mapping and Remote Sensing LIESMARS Wuhan December 19 2011
  513. Geoffrey Fox Data-Intensive Applications on Clouds Keynote at International Workshop on Future Internet and Cloud Computing at the National Laboratory for Information Science and Technology, Multifunction Room, 2nd floor of FIT Building, Tsinghua University, Beijing, China December 16 2011
  514. Geoffrey Fox Cloud Computing versus Social Media Panel Summit 2011 International Conference on Cloud and Green Computing (CGC2011, SCA2011, DASC2011, PICom2011, EmbeddedCom2011) University of Technology Sydney, Australia December 13 2011
  515. Geoffrey Fox Sensors and other Data Intensive Applications on Clouds Keynote at 2011 International Conference on Cloud and Green Computing (CGC2011, SCA2011, DASC2011, PICom2011, EmbeddedCom2011) University of Technology Sydney, Australia December 13 2011
  516. Margaret Glasscoe, Ronald Blom, Gerald Bawden, Geoffrey Fox, Marlon Pierce, John Rundle, Jun Wang, Robert Granat, Michael Burl, Yu Ma, Mark Yoder, Michael Sachs, Eric Fielding, Jay Parker, Charles Norton, Greg Lyzenga, Roland Bürgmann E-DECIDER: Earthquake Disaster Decision Support and Response Tools . Development and Experiences Fall AGU Meeting San Francisco CA December 5-9 2011
  517. Thilina Gunarathne, Bingjing Zhang, Tak-Lon Wu, Judy Qiu Portable Parallel Programming on Cloud and HPC: Scientific Applications of Twister4Azure 4th IEEE/ACM International Conference on Utility and Cloud Computing ( UCC 2011 ) December 5-7 Melbourne Australia
  518. Javier Diaz, Gregor von Laszewski (Presenter), Fugang Wang, Andrew Younge, Geoffrey Fox FutureGrid Image Repository: A Generic Catalog and Storage System for Heterogeneous Virtual Machine Images 3rd IEEE International Conference CloudCom on Cloud Computing Technology and Science, Athens Greece, November 29 - December 1 2011
  519. Gregor von Laszewski Raining Compute Environments on Resources by Application Users October 13, 2011 Open Cirrus Summit 2011, The 6th International Event October 12-13, 2011, Atlanta, Georgia
  520. Gregor von Laszewski FutureGrid and Cybera International Strategic Advisory Committee for Cybera Banff October 5 2011
  521. Javier Diaz, Gregor von Laszewski (Presenter), Fugang Wang, Geoffrey Fox, Andrew Younge RAIN: A system to Dynamically Generate & Provision Images on Bare Metal by Application Users ISC Cloud'11 meeting Mannheim Germany September 26-27 2011
  522. Gregor von Laszewski Opportunities of Services Business in Cloud Age: Fundamental Research Challenges for Cloud-based Service Delivery July 8 2011 Panel (with E. Damiani, S. Diamond, A. M. Goscinski, and D. S. Milojicic) on Opportunities of Services Business in Cloud Age at The Fourth IEEE International Conference on Cloud Computing (CLOUD 2011) July 4-9, 2011, Washington Marriott, Washington DC, USA
  523. Geoffrey Fox Deterministic Annealing Networks and Complex Systems Talk 6pm, Wells Library 001 Indiana University November 21 2011
  524. Geoffrey Fox FutureGrid Overview Presentation at Support for Experimental Computer Science Workshop at SC11 Seattle November 18 2011
  525. Xiaoming Gao, Vaibhav Nachankar, Judy Qiu Experimenting with Lucene Index on HBase in an HPC Environment HPCDB 2011, the 1st Workshop on High-Performance Computing meets Databases at SC11 November 18 2011
  526. Geoffrey Fox Remarks at Panel “HPC in the Cloud – Clearing the Mist or Lost in the Fog” at SC11 Seattle November 17 2011
  527. Geoffrey Fox FutureGrid Overview Presentation at AIST Booth at SC11 Seattle November 16 2011
  528. Thilina Gunarathne (Advisor: Geoffrey Fox) Scalable Parallel Computing on Clouds Doctoral Research Showcase at SC11 Seattle November 15 2011
  529. Jong Youl Choi (Advisor: Geoffrey Fox) Large-scale Data Visualization For Data-intensive And High-dimensional Scientific Data Analysis Doctoral Research Showcase at SC11 Seattle November 15 2011
  530. Javier Diaz, Fugang Wang, Gregor von Laszewski Image Management and Rain on FutureGrid: A practical Example or Dynamic Provisioning Demonstration and Shorter at booth SC11 Seattle November 14-17 2011
  531. Hui Li, Yang Ruan, Yuduo Zhou, Judy Qiu, Geoffrey Fox Design Patterns for Scientific Applications in DryadLINQ CTP The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011
  532. Geoffrey Fox Deterministic Annealing and Robust Scalable Data mining for the Data Deluge Invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011
  533. Judy Qiu Generalizing MapReduce as a Unified Cloud and HPC Runtime invited talk at Petascale Data Analytics: Challenges, and Opportunities (PDAC-11) Workshop at SC11 Seattle November 14 2011
  534. Geoffrey Fox Data Intensive Applications on Clouds Keynote at The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud-SC11) at SC11 November 14 2011
  535. Judy Qiu Iterative MapReduce Enabling HPC-Cloud Interoperability Illinois Institute of Technology Computer Science November 4 2011
  536. Geoffrey Fox Remarks on Undergraduate Research B599/C295 Indiana University Computer Science Pedagogy class November 1 2011 with movie
  537. Marlon Pierce E-DECIDER Workshop: QuakeSim Tools and Products E-DECIDER Workshop JPL October 27 2011
  538. Jun Wang, Marlon Pierce, Geoffrey Fox InSAR Data and GeoServer JPL Review October 26 2011
  539. Thilina Gunarathne, Bimalee Salpitkorala, Arun Chauhan, Geoffrey Fox Optimizing OpenCL Kernels for Iterative Statistical Applications on GPUs 2nd International Workshop on GPUs and Scientific Applications (GPUScA 2011) at Galveston Island, Texas, USA, October 10, 2011, in conjunction with PACT 2011
  540. Geoffrey Fox Security: systems, clouds, models, and privacy challenges iDASH worshop on Privacy San Diego CA October 10-11 2011
  541. Judy Qiu and SALSA HPC Group Analysis Tools for Data Enabled Science Indiana University Presentation September 14 2011
  542. Geoffrey Fox Cloud Cyberinfrastructure and its Challenges & Applications keynote talk at PPAM 2011 Torun Poland September 14 2011
  543. Geoffrey Fox, Gregory G. Pike, Andrew Younge, Gregor von Laszewski FutureGrid Services II: Using HPC Systems MapReduce & Eucalyptus on FutureGrid FutureGrid Tutorial at PPAM 2011 Torun Poland September 11 2011
  544. Geoffrey Fox, Gregor von Laszewski, Andrew Grimshaw, Renato Figueiredo, Kate Keahey FutureGrid Services I FutureGrid Tutorial at PPAM 2011 Torun Poland September 11 2011
  545. Geoffrey Fox (When) Clouds will win! FutureGrid Tutorial at PPAM 2011 Torun Poland September 11 2011
  546. Geoffrey Fox FutureGrid Overview FutureGrid Tutorial at PPAM 2011 Torun Poland September 11 2011
  547. Yang Ruan MapReduce, GPGPU and Iterative Data mining algorithms PhD Qualifying Exam Indiana University Bloomington August 24 2011
  548. Geoffrey Fox Cyberinfrastructure and Its Application at MSI-CIEC Cyberinfrastructure Day at Salish Kootenai College, Pablo Montana, August 2 2011
  549. Steve Myers, Sankarbala Manoharan Risk Analysis based on Sensor Behavior Ball Aerospace Dayton (Fairborn) July 26 2011
  550. Yangyi Chen , XiaoFeng Wang Thwarting Wi-Fi Side-Channel Analysis through Traffic Demultiplexing Ball Aerospace Dayton (Fairborn) July 26 2011
  551. Apu Kapadia, Steve Myers, XiaoFeng Wang Summary of Trustworthiness Research at IU Ball Aerospace Dayton (Fairborn) July 26 2011
  552. Alex Ho and Geoffrey Fox Distributed FutureGrid Clouds for Scalable Collaborative Sensor-Centric Grid Applications Ball Aerospace Dayton (Fairborn) July 26 2011
  553. Geoffrey Fox Status of Clouds and their Applications Ball Aerospace Dayton (Fairborn) July 26 2011
  554. Ryan Hartman Sensor Cloud Technical Interchange Meeting Ball Aerospace Dayton (Fairborn) July 26 2011
  555. FutureGrid from User’s Perspective, Geoffrey Fox; How to Access FutureGrid, Gregor von Laszewski; HPC on FutureGrid, Warren Smith; Cloud Computing on FutureGrid, Kate Keahey; Training, Education and Outreach, Renato Figueiredo; Experimental Framework Support, Warren Smith; contained in FutureGrid: What an Experimental Infrastructure Can Do for You (including Geoffrey Fox FutureGrid BOF Overview ) FutureGrid Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 20 2011
  556. Geoffrey Fox MapReduce TG11 BOF MapReduce Birds of a Feather session TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011
  557. Judy Qiu poster Classical and Iterative MapReduce on Azure at Microsoft Research Faculty Summit July 18 2011
  558. Judy Qiu research demonstration Analysis Tools for Data Enabled Science at DemoFest at Microsoft Research Faculty Summit July 18 2011
  559. Renato Figueiredo Panoat Chuchaisri, David Wolinsky Educational Virtual Clusters for Ondemand MPI/Hadoop/Condor in FutureGrid or ( Powerpoint ) presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011
  560. Javier Diaz, Gregor Von Laszewski, Fugang Wang, Geoffrey C Fox Towards Generic FutureGrid Image Management presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011
  561. John Bresnahan, Tim Freeman, David Labissoniere, Kate Keahey Managing Appliance Launches in Infrastructure Clouds presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 19 2011
  562. Geoffrey Fox Cosmic Issues and Analysis of External Comments on FutureGrid User Advisory Board at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011
  563. Kate Keahey Outsourcing Ecosystem for Science: Applications and Patterns at Workshop on Science Agency Uses of Clouds and Grids at OGF32 and TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011
  564. Gregory G. Pike, Andrew Younge, Gregor von Laszewski HPC, Hadoop and Eucalyptus on FutureGrid at FutureGrid Tutorial presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011
  565. Gregor von Laszewski, Andrew Grimshaw, Renato Figueiredo, Kate Keahey, Gregory G. Pike, Andrew Younge, FutureGrid Services I (including Nimbus Tutorial by Kate Keahey) at FutureGrid Tutorial presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011
  566. Geoffrey Fox FutureGrid Overview at FutureGrid Tutorial presented at TG 11 (TeraGrid '11: Extreme Digital Discovery) Marriott Salt Lake City July 18 2011
  567. Renato Figueiredo Education and Training on FutureGrid at OGF32 Marriott Salt Lake City July 17 2011
  568. Gregor von Laszewski Overview of the FutureGrid Software at OGF32 Marriott Salt Lake City July 17 2011
  569. Geoffrey Fox FutureGrid Overview at FutureGrid Tutorial presented at OGF32 Marriott Salt Lake City July 17 2011
  570. Andrew Younge and Jerome Mitchell Mapreduce Overview for FutureGrid Internal Presentation July 2011
  571. Geoffrey Fox Cyberinfrastructure and Its Application Presentation to CReSIS REU Program July 12 2011 Videoconferenced from Indiana University
  572. Andrew J. Younge, Robert Henschel, James T. Brown, Gregor von Laszewski, Judy Qiu, Geoffrey C. Fox Analysis of Virtualization Technologies for High Performance Computing Environments Presented July 5 2011 at The Fourth IEEE International Conference on Cloud Computing (CLOUD 2011) July 4-9, 2011, Washington Marriott, Washington DC, USA
  573. Geoffrey Fox Science of Cloud Computing Panel Presentation July 5 2011 at Fourth IEEE International Conference on Cloud Computing (CLOUD 2011) July 4-9, 2011, Washington Marriott, Washington DC, USA
  574. Geoffrey Fox Research and the School of Informatics and Computing talk at School of Informatics and Computing Summer REU Program Indiana University Bloomington June 30 2011
  575. Geoffrey Fox Cyberinfrastructure and Its Application California State University Dominguez Hills Cyberinfrastructure Day June 25 2011
  576. Geoffrey Fox, Shantenu Jha, Dan Katz, Judy Qiu, Jon Weissman Dynamic Distributed Data Intensive Analysis Environments for Life Sciences 3DAPAS/ECMLS Combined Panel at Workshop on Dynamic Distributed Data-Intensive Applications, Programming Abstractions, and Systems ( 3DAPAS ) and Emerging Computational Methods for the Life Sciences Workshop ECMLS2011 of ACM HPDC 2011 conference
  577. Judy Qiu, Thilina Gunarathne, Geoffrey Fox Classical and Iterative MapReduce on Azure Cloud Futures 2011 workshop Microsoft Conference Center Building 33 Redmond, Washington United States, June 2–3, 2011
  578. Apu Kapdia, Steven Myers, XiaoFeng Wang, Geoffrey Fox Towards Securing Sensor Clouds 2011 International Symposium on Collaborative Technologies and Systems CTS 2011 May 23-27, 2011 The Sheraton University City Hotel Philadelphia, Pennsylvania, USA
  579. Ryan Hartman, Geoffrey Fox Sensor Cloud Poster IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.
  580. Ryan Hartman, Geoffrey Fox Sensor Cloud Flyer IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.
  581. Geoffrey Fox, Alex Ho, Eddy Chan Measured Characteristics of FutureGrid Clouds For Scalable Collaborative Sensor-Centric Grid Applications IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , Waleed Smari, Editor. May 23-27 2011, Philadelphia.
  582. G. von Laszewski, A. J. Younge, and P. Marshall FutureGrid Tutorial at IEEE/ACM CCGrid Conference May 23 2011 Newport Beach, CA, USA.
  583. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 1: Clouds will win! at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  584. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 2: FutureGrid Overview at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  585. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 3: Getting Access to FutureGrid at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  586. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 4: Virtual Appliances at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  587. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 5: Eucalyptus on FutureGrid at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  588. Geoffrey Fox Tutorial on When are Clouds useful and how can you find out if they are for you using FutureGrid? 6: Image Generation and Management on FutureGrid at IEEE International Symposium on Collaborative Technologies and Systems CTS 2011 , May 23 2011, Philadelphia.
  589. Geoffrey Fox [Biomedical Cloud
    Computing](http://infomall.org/presentations/iDASH-May12-2011_Fox.pptx)
    iDASH
    Symposium
    Integrating Data for Analysis, Anonymization, and Sharing, The Great Hall, University of California, San Diego, May 11-12, 2011
  590. Adam Hughes for SALSA group Interpolative Multidimensional Scaling Techniques for the Identification of Clusters in Very Large Sequence Sets GLBIO Great Lakes Bioinformatics Conference Ohio University Athens Ohio May 2-4 2011 on May 4 2011
  591. Geoffrey Fox OpenQuake Infomall APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011 on May 4 2011
  592. Marlon Pierce, Jun Wang, Yu Ma, Xiaoming Gao E-DECIDER Earthquake Response Activities APEC Cooperation for Earthquake Simulation (ACES) Workshop on Advances in Simulation of Multihazards Maui, Hawaii, May 1-5, 2011 on May 4 2011
  593. Geoffrey Fox CReSIS Cyberinfrastructure at CReSIS Advisory Board meeting Lawrence Kansas April 28 2011
  594. Geoffrey Fox and Linda Hayden PolarGrid Support of CReSIS poster at CReSIS Advisory Board meeting Lawrence Kansas April 28 2011
  595. Jerome Mitchell, Jun Wang, Geoffrey Fox and Linda Hayden A Cloudy View on Computing workshop and CReSIS Field Data Accessibility student poster at CReSIS Advisory Board meeting Lawrence Kansas April 28 2011
  596. SALSA Group SALSA Group Research Activities Bloomington Indiana April 27 2011
  597. Geoffrey Fox Cyberinfrastructure and Its Application University of Arkansas Pine Bluff MSI-CIEC Cyberinfrastructure Day April 22 2011
  598. A. J Younge. Creating Research Posters , Guest Lecture at Indiana University, April 2011
  599. Judy Qiu Hybrid Cloud and Cluster Computing Paradigms for Scalable Data Intensive Applications University of Alabama Tuscaloosa April 15 2011
  600. Geoffrey Fox Bioinformatics on Cloud Cyberinfrastructure or Shorter Bioinformatics Track at Bio-IT World Conference & Expo '11 April 12-14 World Trade Center Boston Mass
  601. Thilina Gunarathne, Judy Qiu, Geoffrey Fox Twister4Azure : Iterative MapReduce for Azure Cloud Poster at CCA11 Cloud Computing and Its Applications April 12-13, 2011
  602. Thilina Gunarathne, Judy Qiu, Geoffrey Fox Twister4Azure : Iterative MapReduce for Azure Cloud Lightning Talk at CCA11 Cloud Computing and Its Applications April 12-13, 2011
  603. J. Diaz, A. J. Younge, G. von Laszewski, F. Wang, and G. C. Fox, Grappling cloud infrastructure services with a generic image repository in Proceedings of CCA11 Cloud Computing and Its Applications April 12-13, 2011
  604. Marlon Pierce, Geoffrey Fox Developing Cyberinfrastructure to Support Computational Chemistry Workflows April 7-8 OREChem Review at Pacific Northwest National Lab in Pasco WA
  605. Jerome Mitchell A Cloudy View on Computing Workshop and CReSIS Field Data Accessibility at CReSIS virtual meeting April 5 2011 delivered from Bloomington IN
  606. Geoffrey Fox CReSIS Cyberinfrastructure at CReSIS virtual meeting April 4 2011 delivered from Bloomington IN
  607. Ryan Hartman Core SCGMMS (Sensor Centric Grid Middleware Management System) Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  608. XiaoFeng Wang Dr. XiaoFeng Wang’s Research Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  609. Apu Kapadia Sensory Malware Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  610. Alex Ho Distributed FutureGrid Clouds for Scalable Collaborative Sensor-Centric Grid Applications Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  611. Geoffrey Fox Clouds Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  612. Steve Myers Contextually Aware Risk Analysis of Sensors Advanced Technology for Sensor Clouds Project Meeting Bloomington IN March 24 2011
  613. Geoffrey Fox FutureGrid Overview The Science of Cloud Computing workshop Washington DC March 18 2011
  614. Geoffrey Fox FutureGrid Poster at The Science of Cloud Computing workshop Washington DC March 17 2011
  615. Geoffrey Fox FutureGrid or longer Indiana University School of Informatics and Computing February 18 2011
  616. Geoffrey Fox Implications of Clouds for Data Intensive Science with application to Biomedical Science I400 Health Informatics Indiana University March 10 2011. See video at PoP or PiP
  617. Geoffrey Fox DataIntensive Cyberinfrastructure I400 Health Informatics Indiana University March 8 2011
  618. Geoffrey Fox Cyber-Infrastructure in Education MSI-CIEC Cyberinfrastructure Day at South Carolina State University March 3 2011
  619. Geoffrey Fox Overview of Cyberinfrastructure and the Breadth of Its Application MSI-CIEC Cyberinfrastructure Day at South Carolina State University March 3 2011
  620. Geoffrey Fox Clouds, Grids, Clusters and FutureGrid IUPUI Computer Science department Seminar February 11 2011
  621. Marlon Pierce, Jun Wang, Geoffrey Fox EDECIDER Progress from IU February 7 2011
  622. Renato Figueiredo FutureGrid Training, Education and Outreach at FutureGrid Review Indiana University January 17 2011
  623. Gregory Pike FutureGrid User Support at FutureGrid Review Indiana University January 17 2011
  624. Geoffrey Fox, Kate Keahey, Jens Vöckler, Shava Smallen, Warren Smith, Andrew Grimshaw Use of FutureGrid at FutureGrid Review Indiana University January 17 2011
  625. Gregor von Laszewski and others FutureGrid Software at FutureGrid Review Indiana University January 17 2011
  626. Geoffrey Fox FutureGrid Overview at FutureGrid Review Indiana University January 17 2011
  627. Geoffrey Fox FutureGrid Overview IMA (Institute for Mathematics and its Applications) Annual Program Year Workshop High Performance Computing and Emerging Architectures, University of Minneapolis January 13 2011
  628. Geoffrey Fox Deterministic Annealing: Oct Trees and High Dimension (followed by FutureGrid) IMA (Institute for Mathematics and its Applications) Annual Program Year Workshop High Performance Computing and Emerging Architectures, University of Minneapolis January 13 2011
  629. Thilina Gunarathne Overview of Cloud Technologies and Parallel Programming Frameworks for Scientific Applications Oral PhD presentation Indiana University January 11 2011
  630. Marlon Pierce, Geoffrey Fox QuakeSim Annual Report from IU Virtual Review 12 January 2011
  631. Geoffrey Fox Implications of Clouds for eScience and CReSIS presentation to CReSIS center at University of Kansas Lawrence January 4 2011
  632. Jaliya Ekanayake Architecture and Performance of Runtime Environments for Data Intensive Scalable Computing Indiana University PhD Exam December 20 2010
  633. Xiaoming Gao An Overview of Grid, Cloud and related Database Technologies Indiana University PhD Qualifying Exam December 17 2010
  634. Geoffrey Fox Cloud Computing for ADMI ADMI Board Meeting and faculty workshop at Elizabeth City State University, December 16 2010
  635. Judy Qiu, David Wild and Geoffrey Fox Analyzing large-scale cheminformatics and chemogenomics datasets through dimension reduction Neural Information Processing Systems ( NIPS ) workshop Charting Chemical Space: Challenges and Opportunities for AI and Machine Learning Saturday, December 11, 2010
  636. Seung-Hee Bae (presenter), Judy Qiu, and Geoffrey Fox Multidimensional Scaling by Deterministic Annealing with Iterative Majorization Algorithm IEEE eScience 2010 Conference , Brisbane, Australia 7 - 10 December 2010
  637. Geoffrey Fox CloudCom Summary CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  638. G. von Lazewski, G. G. Pike, A. J. Younge, A. Kulshrestha, A Tutorial on the FutureGrid Project , CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  639. Geoffrey Fox Experimenting with FutureGrid at IU Cloud Computing for Business and Industry Dinner Seminar CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  640. Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, Geoffrey Fox MapReduce in the Clouds for Science Proceedings of CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  641. Bingjing Zhang, Yang Ruan, Tak-Lon Wu, Judy Qiu, Adam Hughes, Geoffrey Fox Applying Twister to Scientific Applications Presentation at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  642. SALSA Laboratory: Thilina Gunarathne, Stephen Tak-lon Wu, Hui Li, Yuduo Zhou, Bingjing Zhang, Adam Lee Hughes, Saliya Ekanayake, Jong Youl Choi, Seung-Hee Bae, Yang Ruan, Geoffrey Fox and Judy Qiu Parallel Applications And Tools For Cloud Computing Environments Poster at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  643. SALSA Laboratory: Thilina Gunarathne, Stephen Tak-lon Wu, Hui Li, Yuduo Zhou, Bingjing Zhang, Adam Lee Hughes, Saliya Ekanayake, Jong Youl Choi, Seung-Hee Bae, Yang Ruan, Geoffrey Fox and Judy Qiu Parallel Applications And Tools For Cloud Computing Environments Demonstration and proposal at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  644. SALSA Presentation Resources: Slides Word Count Demo and Ray Tracing Demo PlotViz3 Demo GTM CTD Disease Demo Twister Kmeans Demo Twister Kmeans Demo on one node TeraGrid
  645. Gregor von Laszewski, Geoffrey C. Fox, and the FutureGrid Team Dynamic Provisioned Experiments in FutureGrid Poster at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  646. Xiaoming Gao, Yu Ma, Marlon Pierce, Mike Lowe, Geoffrey Fox VBS-Lustre: A Distributed Block Storage System for Cloud Infrastructure Presentation at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30-December 3 2010
  647. Judy Qiu CloudCom 2010 Overview Introduction at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30 2010
  648. Geoffrey Fox Enable your work on hot topics with FutureGrid Keynote at CloudCom 2010 Conference IUPUI Conference Center Indianapolis November 30 2010
  649. Geoffrey Fox FutureGrid at Indiana University Booth at SC10 November 17 2010
  650. Judy Qiu and SALSA group IU Twister Supports Data Intensive Science Applications SALSA demonstration at Indiana University Booth at SC10 November 17 2010
  651. Judy Qiu and SALSA group Parallel Applications And Tools For Cloud Computing Environments SALSA demonstration at Indiana University Booth at SC10 November 17 2010
  652. Geoffrey Fox Cloud Data mining and FutureGrid or longer version at AIST Booth at SC10 November 17 2010
  653. Geoffrey Fox, Andrew J. Younge, Gregor von Laszewski, Archit Kulshrestha, Fugang Wang Rain: Dynamically Provisioning Clouds within FutureGrid Poster at SC10 November 13-19 2010
  654. Gregor von Laszewski FutureGrid: a Testbed for Cloud and Grid Computing Invited talk at The 5th Workshop on Workflows in Support of Large-Scale Science at SC10 November 14 2010
  655. Gregor von Laszewski (presenter), Geoffrey C. Fox, Fugang Wang, Andrew Younge, Archit Kulshrestha, Greg Pike (IU), Warren Smith, (TACC) Jens Vöckler (ISI), Renato J. (USC), Figueiredo (UF), The FG Team Design of the FutureGrid Experiment Management Framework GCE Workshop at SC10 November 14 2010
  656. Geoffrey Fox Advanced Technology for Sensor Clouds Ball Aerospace meeting November 5 2010
  657. Geoffrey Fox Clouds and Application to Sensor Nets Ball Aerospace meeting November 4 2010
  658. Alex Ho Net-Centric Sensor Grid Phase 3 Ball Aerospace meeting November 4 2010
  659. Geoffrey Fox The Indiana University School of Informatics Indiana University Bllomington Crane meeting at IU Innovation Center November 3 2010
  660. Geoffrey Fox eScience: Grids, Clouds and Parallel Computing and video Challenges in eScience Workshop , Vale Real Hotel - Itaipava - Petrópolis RJ, Brazil October 29 2010
  661. Rich Knepper FutureGrid: Cyberinfrastructure for Computational Research TeraGrid Campus Champions meeting October 19 2010
  662. Geoffrey Fox FutureGrid and Cyberinfrastructure supporting Data Analysis October 11 2010 Googleplex Mountain View CA
  663. Marlon Pierce, Jun Wang, Yu Ma, Jun Ji, Xiaoming Gao, Geoffrey Fox (presenter) QuakeSim Science Gateway: ACES Update October 6 2010, 7th ACES International Workshop OTARU, October 3-8, 2010
  664. Geoffrey Fox Cloud Architecture for Earthquake Science October 6 2010, 7th ACES International Workshop OTARU, October 3-8, 2010
  665. Geoffrey Fox FutureGrid and US Cyberinfrastructure Collaboration with EU and longer version at SYMPOSIUM ON TRANSATLANTIC EU-U.S. COOPERATION IN THE FIELD OF LARGE SCALE RESEARCH INFRASTRUCTURES
  666. Judy Qiu Performance of MapReduce on Multicore Clusters , invited talk in the 2th Workshop on “Frontiers of Multicore Computing” (FMC II) at University of Maryland, Baltimore County. September 22-23, 2010
  667. Judy Qiu Scalable Programming and Algorithms for Data Intensive Life Science Applications Data-Intensive Sciences Workshop NSF September 19-20, 2010 in Seattle
  668. Geoffrey Fox FutureGrid National Science Foundation September 15 2010
  669. Geoffrey Fox MPI and MapReduce Clusters, Clouds, and Grids for Scientific Computing CCGSC 2010 Flat Rock NC September 8 2010
  670. Geoffrey Fox Services, Security, and Privacy in Cloud Computing Panel September 3 2010, IEEE HPCC-10 International Conference on High Performance Computing and Communications Melbourne Australia Septemeber 1-3 2010
  671. Geoffrey Fox Research in Grids and Clouds and FutureGrid Melbourne University Seminar September 2 2010
  672. Geoffrey Fox HPCC with Grids and Clouds Keynote September 1 2010, IEEE HPCC-10 International Conference on High Performance Computing and Communications Melbourne Australia Septemeber 1-3 2010
  673. Marlon Pierce, Geoffrey Fox, Xiaoming Gao, Jun Ji, Jun Wang, Marie Ma, Josh Rosen IU QuakeSim Updates Internal presentation August 28 2010
  674. Geoffrey Fox Data Intensive Cyberinfrastructure Seminar University of Tennessee, Knoxsville August 26 2010
  675. Fugang Wang, Archit Kulshrestha, Gregory G. Pike, Gregor von Laszewski, Geoffrey C. Fox FutureGrid Dynamic Provisioning Experiments including Hadoop Internal FutureGrid presentation August 25 2010
  676. Geoffrey Fox Overview of Cyberinfrastructure Northeastern Illinois University Cyberinfrastructure Day August 17 2010
  677. Andrew J. Younge, Gregor von Laszewski, Lizhe Wang, Sonia Lopez-Alarcon, and Warren Carithers. Efficient Resource Management for Cloud Computing Environments Work in Progress in Green Computing with the IEEE International Green Computing Conference (IGCC), Chicago, IL USA, Aug 15-18, 2010.
  678. Geoffrey Fox Evaluating (Scientific) Knowledge for people, documents, organizations/activities/communities ICiS Workshop : Integrating, Representing and Reasoning over Human Knowledge Snowbird August 9 2010
  679. Geoffrey Fox FutureGrid Summary at TG'10 TeraGrid users meeting August 2-5 2010, Pittsburgh BOF on New Compute Systems in the TeraGrid Pipeline August 3 2010
  680. Pierre Riteau, Mauricio Tsugawa, Andrea Matsunaga, Jose´ Fortes, Tim Freeman, David LaBissoniere, Kate Keahey Sky Computing on FutureGrid and Grid'5000 Poster at at TG'10 TeraGrid users meeting August 2-5 2010
  681. Geoffrey Fox Future Grid Early Projects at FutureGrid User Advisory Board, TG'10 August 2 2010
  682. Judy Qiu SALSA_Laboratory work on FutureGrid at FutureGrid User Advisory Board, TG'10 August 2 2010
  683. Gregor von Laszewski FutureGrid Long term Architecture Roadmap at FutureGrid User Advisory Board, TG'10 August 2 2010
  684. Gregor von Laszewski FutureGrid Near term Architecture Roadmap at FutureGrid User Advisory Board, TG'10 August 2 2010
  685. Geoffrey Fox FutureGrid Summary at FutureGrid User Advisory Board, TG'10 August 2 2010
  686. Geoffrey Fox Big Data Workshop Summary of presentations at Big Data Virtual School for Computational Science and Engineering July 30 2010
  687. Craig Stewart FutureGrid 101 (part two): Getting Started one of presentations at Big Data Virtual School for Computational Science and Engineering July 30 2010
  688. Geoffrey Fox FutureGrid 100 and FutureGrid 101 (part one) one of presentations at Big Data Virtual School for Computational Science and Engineering July 30 2010
  689. Geoffrey Fox FutureGrid presentation at TeraGrid Science Advisory Board meeting San Diego July 20 2010 (more detailed version )
  690. Geoffrey Fox SCSI: Platforms & Foundations: Cyberinfrastructure Presentation at Socially Coupled Systems & Informatics: Science, Computing & Decision Making in a Complex Interdependent World workshop Arlington VA July 14 2010
  691. Geoffrey Fox Clouds and FutureGrid Seminar at NASA Ames July 1 2010
  692. Geoffrey Fox Grids and Clouds for Cyberinfrastructure IIT Illinois Institute of Technology Chicago June 25 2010
  693. Geoffrey Fox and Judy Qiu Digital Science Center IIT Illinois Institute of Technology Chicago June 25 2010
  694. Geoffrey Fox The Indiana University School of Informatics IIT Illinois Institute of Technology Chicago June 25 2010
  695. Seung-Hee Bae, Jong Youl Choi, Judy Qiu, and Geoffrey Fox Dimension Reduction and Visualization of Large High-Dimensional Data via Interpolation HPDC 2010 conference, Chicago, Illinois, June 25, 2010
  696. Geoffrey Fox Cloud versus Cloud: How Will Cloud Computing Shape Our World? at Panel HPDC 2010 conference, Chicago, Illinois, June 24, 2010.
  697. Geoffrey Fox FutureGrid: Supporting Next Generation Cyberinfrastructure VTDC10 - The 4th International Workshop on Virtualization Technologies in Distributed Computing at HPDC Chicago Illinois June 22 2010
  698. Jaliya Ekanayake Twister: A Runtime for Iterative MapReduce MAPREDUCE'10 Workshop at HPDC 2010 conference, Chicago, Illinois, June 22, 2010
  699. Jong Youl Choi, Seung-Hee Bae, Judy Qiu, Geoffrey Fox, Bin Chen, and David Wild, Browsing Large Scale Cheminformatics Data with Dimension Reduction in Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 22, 2010
  700. Thilina Gunarathne, Tak-Lon Wu Judy Qiu, Geoffrey Fox Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications Emerging Computational Methods for the Life Sciences Workshop of ACM HPDC 2010 conference, Chicago, Illinois, June 21, 2010.
  701. Geoffrey Fox Algorithms and Applications for Grids and Clouds 22nd ACM Symposium on Parallelism in Algorithms and Architectures Santorini, Greece June 13 – 15, 2010
  702. Geoffrey Fox FutureGrid Presentation at Venus-C Kick-off Meeting Brussels Belgium June 2 2010
  703. Jong Youl Choi, Judy Qiu, Marlon Pierce, Geoffrey Fox Generative Topographic Mapping by Deterministic Annealing Presentation at the 10th International conference on Computational Science and Engineering ( ICCS 2010 ), May 31 - Jun 2, 2010. Amsterdam, The Netherlands.
  704. Geoffrey Fox Clouds Cyberinfrastructure and Collaboration Presentation at The 2010 International Symposium on Collaborative Technologies and Systems ( CTS 2010 ) May 20, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA
  705. Jong Youl Choi, Seung-Hee Bae, Xiaohong Qiu and Geoffrey Fox High Performance Dimension Reduction and Visualization for Large High-dimensional Data Analysis Presentation at the The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Australia
  706. Jong Youl Choi (speaker), Lizhe Wang, Gregor von Laszewski, Jai Dayal. Towards Energy Aware Scheduling for Precedence Constrained Parallel Tasks in a Cluster with DVFS 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17-20, 2010, Melbourne, Victoria, Australia.
  707. Tyler Pace Human-Centered e-Science: A Group-Theoretic Perspective on Cyberinfrastructure Design Presentation at The 2010 International Symposium on Collaborative Technologies and Systems ( CTS 2010 ) May 19, 2010 The Westin Lombard Yorktown Center Chicago, Illinois, USA
  708. Judy Qiu Performance of Windows Multicore Systems on Threading and MPI Proceeding Frontiers of GPU, Multi- and Many-Core Systems Workshop in The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 18 2010, Melbourne, Australia
  709. Judy Qiu Cloud Technologies and Their Applications Keynote at 5th International Workshop on Content Delivery Networks (CDN 2010) in The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing ( CCGrid 2010), May 17, 2010, Melbourne, Australia
  710. Karthik Narayan Using SWARM service to run a Grid based EST Sequence Assembly School of Informatics and Computing Masters Capstone presentation May 17 2010
  711. Geoffrey Fox Cloud Technologies and Data Intensive Applications INGRID 2010 Instrumenting the Grid Workshop Poznan Poland May 13 2010
  712. Geoffrey Fox FutureGrid in a Nutshell Status report May 12 2010
  713. Lizhe Wang, Gregor von Laszewski, Jie Tao and Marcel Kunze. Schedule Distributed Virtual Machines in a Service Oriented Environment 24th IEEE International Conference on Advanced Information Networking and Applications (AINA'10). Perth, Australia April 20-23, 2010, Australia (talk not presented due to visa issues)
  714. Geoffrey Fox Overview of Cyberinfrastructure and the Breadth of Its Application Howard University April 16 2010 Cyberinfrastucture Day
  715. Suresh Marru, Raminder Singh, Marlon Pierce UltraScan Gateway Advanced Support TeraGrid Science Gateway Teleconference, April 16th 2010
  716. Seung-Hee Bae PhD Proposal Scalable High Performance Dimension Reduction with Text Version April 15 2010
  717. Geoffrey Fox PolarGrid NSF CReSIS review at NSF April 13 2010
  718. Jong Youl Choi PhD Proposal Generative Topographic Mapping in Life Science April 12 2010
  719. Geoffrey Fox, Judy Qiu and SALSAGroup MapReduce and Clouds for Science Poster at Microsoft External Research Review Redmond WA April 6-7 2010 with more details
  720. Gregor von Laszewski Future Grid Introduction Department of Energy MAGIC virtual meeting April 7 2010
  721. Roman Schlegel, Kehuan Zhang, Zhou Li, Apu Kapadia (presenter), XiaoFeng Wang Soundminer A Stealthy and Context-Aware Sound Trojan for Smartphones Innovation Center Indiana University Bloomington March 29 2010
  722. Steven Myers (presenter), Apu Kapadia, XiaoFeng Wang and Geoffrey Fox Secure Cloud Computing With Brokered Trusted Sensor Networks and demonstration of Side-Channel Threats to Web Applications at Innovation Center Indiana University Bloomington March 29 2010
  723. Judy Qiu Cloud Technologies and Their Applications Indiana University Bloomington March 26 2010 with longer version and a giant version
  724. Geoffrey Fox for SALSA group Poster or Spread Out Version Data Intensive Research Workshop at NESC Edinburgh March 17 2010
  725. Marlon Pierce, Geoffrey Fox, Sashikiran Challa IU OREChem Summary Slides for Carl Lagoze presentation at ACS March 2010 and Microsoft External Research Meeting April 2010
  726. Geoffrey Fox and Shantenu Jha Introduction to Programming Paradigms Activity at Data Intensive Workshop Data Intensive Research Workshop at NESC Edinburgh March 15 2010
  727. Gregor von Laszewski Future Grid Introduction Open Science Grid All Hands Meeting March 8, 2010 at Fermilab Batavia, IL
  728. Marlon Pierce Science Gateway Advanced Support Activities in PTI Innovation Center Indiana University Bloomington March 4 2010
  729. Craig Stewart FutureGrid: an experimental, high-performance grid testbed TeraGrid meeting 3 March 2010
  730. Judy Qiu, Geoffrey Fox Digital Science Center Innovation Center Indiana University February 12 2010
  731. SALSA Group SALSA and Cheminformatics Innovation Center Indiana University February 12 2010
  732. Judy Qiu Cloud Technologies and Their Applications Indiana University Bloomington February 12 2010
  733. Alex Ho and Geoffrey Fox Demonstration of Sensor Grid with Lego Robots Indiana University February 2010
  734. Geoffrey Fox, Judy Qiu, Scott Beason, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Yang Ruan, Hui Li, Bingjing Zhang, Saliya Ekanayake, Stephen Wu SALSA Group’s Collaborations with Microsoft Report February 5 2010
  735. Marlon Pierce and Geoffrey Fox Building Effective CyberGIS: FutureGrid National Science Foundation TeraGrid Workshop on Cyber-GIS February 2-3 2010 Washington DC
  736. Judy Qiu and SALSA Group SALSA Group’s Collaborations with Microsoft Presentation at Innovation Center Indiana University February 2 2010, with word Version
  737. Marlon Pierce Building and Testing OGCE Software on the NMI Build and Test Facility SDCI/STCI Build and Test Workshop NSF January 27 2010
  738. Geoffrey Fox Clouds and FutureGrid MSI-CIEC All Hands Meeting SDSC January 27 2010
  739. Suresh Marru OGCE Workflow Toolkit for Multi-Scale Science Applications ODI Gateway/Pipeline National Optical Astronomy Observatory , Tucson, AZ, January 21st 2010
  740. Marlon Pierce, Geoffrey Fox, Xiaoming Gao, Jun Ji, Chao Sun Indiana University QuakeSim Activities January 14 2010
  741. Geoffrey Fox PolarGrid Meadowood Bloomington Indiana January 12 2010
  742. Geoffrey Fox FutureGrid and Applications Indiana University Innovation Center December 18 2009
  743. Lizhe Wang, Gregor von Laszewski and Jai Dayal. Thermal aware workload scheduling with backfilling for green data centers . Accepted by 28th IEEE International Performance Computing and Communications Conference (I(IPCCC'09) December 14-16, 2009 Phoenix, Arizona, USA.
  744. Lizhe Wang, Gregor von Laszewski, Jai Dayal, Xi He, Andrew J. Younge and Thomas R. Furlani. Towards Thermal Aware Workload Scheduling in a Data Center . Accepted by the 10th International Symposium on Pervasive Systems (i-SPAN'09), Algorithms and Networks, Taiwan, Dec. 14-16 2009.
  745. Casey Rathbone, Lizhe Wang, Gregor von Laszewski, Fugang Wang. Cyberaide Creative: On-Demand Cyberinfrastructure Provision in Clouds . International Workshop on Grid Computing, Applications, and Technologies (GridCAT 2009), Taiwan, Dec. 14-16 2009.
  746. Tobias Kurze, Lizhe Wang, Gregor von Laszewski, Jie Tao, Marcel Kunze, and Fugang Wang, Jaliya Ekanayake. Cyberaide Virtual Applicance: On-demand Deploying Middleware for Cyberinfrastructure . First International Conference on Cloud Computing (CloudComp'09), October 19 - 21, 2009, Munich, Germany.
  747. Gregor von Laszewksi, Lizhe Wang, Andrew Younge and Xi He. Power aware scheduling algorithm for DVFS clusters . In proceedings of IEEE International Conference on Cluster Computing (Cluster'09), New Orleans, Louisiana, Aug. 2009.
  748. Geoffrey Fox Cloud Technologies and GeoScience Applications including FutureGrid International Symposium on Geo-Computation and Analysis ISGA 2009 LIESMARS Wuhan December 10 2009
  749. Suresh Marru, Raminder Singh, Marlon Pierce Experiences with OGCE Workflow Suite Empowering LEAD, GridChem, BioVLAB, UltraScan Science Gateways TeraGrid Gateways Call December 11 2009
  750. Xiaoming Gao, Mike Lowe, Yu Ma, Marlon Pierce Supporting Cloud Computing with the Virtual Block Store System Indiana University December 4 2009
  751. Suresh Marru, Raminder Singh, Marlon Pierce, OGCE Components for Enhancing UltraScan Job Management , University of Texas Health Science Center, San Antonio, TX, December 3rd 2009
  752. Geoffrey Fox Cloud Panel Session Panel at The 1st International Conference on Cloud Computing (CloudCom 2009) at Beijing Jiaotong University December 2 2009
  753. Geoffrey Fox FutureGrid Cloud Technologies and Bioinformatics Applications Keynote talk at The 1st International Conference on Cloud Computing (CloudCom 2009) at Beijing Jiaotong University December 2 2009
  754. Gerald Guo, Raminder Singh, Marlon Pierce Building Polargrid Portal using Gadgets and OpenSocial GCE09 Grid Computing Environments GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009
  755. Thilina Gunarathne, Chathura Herath, Eran Chinthaka, Suresh Marru Experience with Adapting a WS-BPEL Runtime for eScience Workflows GCE09 Grid Computing Environments 2009 workshop at SC09 Portland Oregon November 20 2009
  756. Gregor von Laszewski, Lizhe Wang, Jai Dayal, Bingjing Zhang GreenIT @ cyberaide.org Portland Oregon Indiana University Booth November 16-19 2009
  757. Geoffrey Fox, Gregor von Laszewski, Marlon Pierce, Judy Qiu FutureGrid Overview Portland Oregon Indiana University Booth November 16-19 2009
  758. Geoffrey Fox FutureGrid Overview SC09 Conference Portland Oregon AIST Booth November 19 2009
  759. Jaliya Ekanayake, ( Advisor Geoffrey Fox) Architecture and Performance of Runtime Environments for Data Intensive Scalable Computing Doctoral Showcase SC09 Portland Oregon November 18 2009
  760. Geoffrey Fox Cloud Technologies and Bioinformatics Applications Portland Oregon Indiana University Booth November 18 2009
  761. Marlon Pierce, Suresh Marru, Zhenhua Guo, Fugang Wang, Rion Dooley, Wenjun Wu, Gregor von Laszewksi, and the OGCE Team Building Science Gateways and Managing Workflows with the Open Grid Computing Environment Toolkit Portland Oregon Indiana University Booth November 17 2009
  762. Geoffrey Fox FutureGrid Overview SC09 Conference Portland Oregon Indiana University Booth November 18 2009
  763. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Geoffrey Fox, Scott Beason, Jong Youl Choi, Yang Ruan, Seung-Hee Bae, Hui Li SALSA Group Poster/Demo SC09 Conference Portland Oregon Indiana University Booth November 16-20 2009
  764. Judy Qiu Using Cloud Technologies for Bioinformatics Applications MTAGS 2nd Workshop on Many-Task Computing on Grids and Supercomputers at SC09 Conference Portland Oregon November 16 2009
  765. Judy Qiu Using MapReduce Technologies in Bioinformatics and Medical Informatics in Using clouds for parallel computations in systems biology Workshop (part of DoE Knowledgebase in Systems Biology) at SC09 Conference Portland Oregon November 16 2009
  766. Geoffrey Fox FutureGrid Overview Template November 6 2009
  767. Craig Stewart FutureGrid: an experimental, high-performance grid testbed NCSA Urbana Champaign October 25 2009
  768. Gregor von Laszewski FutureGrid and Green Aware Computing Northern Illinois University October 28 2009
  769. Zhenhua Guo Overview of Modern Web Architectures, Standards, Security, and Future Directions PhD Qualifying Exam October 26 2009 Indiana University Bloomington
  770. Judy Qiu Multicore and Cloud Technologies for Data Intensive Applications Ballantine Hall 006, Indiana University Bloomington October 23, 2009
  771. Gregor von Laszewski Cloud Security Panel session at NSS 2009 - 3rd International Conference on Network & System Security October 19-21 2009
  772. Gregor von Laszewski FutureGrid and Green Aware Computing Keynote at NSS 2009 - 3rd International Conference on Network & System Security October 19-21 2009
  773. Jaliya Ekanayake and Geoffrey Fox High Performance Parallel Computing with Clouds and Cloud Technologies CLOUDCOMP 2009 First International Conference on Cloud Computing October 19 - 21, 2009, Munich, Germany
  774. Geoffrey Fox FutureGrid Overview CCA-09 Cloud Computing and its Applications workshop , Marriott Medical Center, Chicago October 20 2009
  775. Gregor von Laszewski and collaborators RAPID, THEORETICALLY SOUND MULTIVARIATE CLUSTERING FOR A PARADIGM SHIFT IN FLOW CYTOMETRY DATA ANALYSIS or PDF Clinical Cytometry Society Annual Meeting, held in Jacksonville, FL, USA, October 17 2009
  776. Judy Qiu Computational Methods for Large Scale DNA Data Analysis Microsoft eScience workshop , October 16 2009, Gates Center Carnegie Mellon University Pittsburgh
  777. Geoffrey Fox Digital Science Center Presentation to Economic Development Group at Indiana University Innovation Center October 15 2009
  778. Marlon Pierce and Geoffrey Fox IU ORE-Chem Update ORECHEM Project meeting Pittsburgh October 14 2009
  779. Gregor von Laszewski GreenIT Service Level Agreements in SERVICE LEVEL AGREEMENTS IN GRIDS WORKSHOP colocated with IEEE/ACM GRID 2009 CONFERENCE , in Banff Canada, October 13, 2009
  780. Judy Qiu High Performance Biomedical Applications Using Cloud Technologies HPC and Grid Computing in the Cloud Workshop at OGF27 (part of Summit09 ) October 13, 2009, Banff Canada
  781. Yang Ruan Future Grid Poster October 16 2009 with Adobe version
  782. Marlon Pierce Future Grid User Portal FutureGrid All Hands Meeting October 2-3 2009, IUPUI Conference Center, Indianapolis IN
  783. Gregor von Laszewski Future Grid Software Architecture FutureGrid All Hands Meeting October 2-3 2009, IUPUI Conference Center, Indianapolis IN
  784. Geoffrey Fox Future Grid All Hands Meeting Introduction FutureGrid All Hands Meeting October 2-3 2009, IUPUI Conference Center, Indianapolis IN
  785. SALSA Group (Geoffrey Fox, Judy Qiu, Scott Beason, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Yang Ruan, Seung-Hee Bae, Hui Li) Data Intensive Biomedical Computing Systems Poster at Indiana State IT meeting October 1 2009, IUPUI Conference Center, Indianapolis IN
  786. Judy Qiu Data Intensive Biomedical Computing Systems Presentation at Indiana State IT meeting October 1 2009, IUPUI Conference Center, Indianapolis IN
  787. Geoffrey Fox PolarGrid and FutureGrid Panel presentation at Indiana State IT meeting October 1 2009, IUPUI Conference Center, Indianapolis IN
  788. Gregor von Laszewski Towards Green Aware Computing Presentation to Visitors from Lilly Corporation September 25 2009
  789. Geoffrey Fox, Judy Qiu, Marlon Pierce New Approaches to Scientific Computing Presentation to Visitors from Lilly Corporation September 25 2009
  790. Geoffrey Fox Cloud Technologies for Data Intensive Computing Cloud Computing and Collaborative Technologies in the Geosciences workshop September 17-18, 2009, Indianapolis
  791. Sangmi Lee Pallickara, Marlon Pierce, Qunfeng Dong, Chin Hua Kong Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters Parallel Bio-Computing Workshop on Parallel Computational Biology, Wroclaw, Poland September 13-16, 2009
  792. Suresh Marru, Marlon Pierce, OGCE Workflow and LEAD overview , NOAO Visit to IU, Bloomington, IN, September 9th, 2009
  793. Jaliya Ekanayake DryadLINQ for Scientific Analyses Microsoft Internship Presentation, Redmond Wa, September 3 2009
  794. Huang Tao A Scalable Framework for the Collaborative Annotation of Live Data Streams PhD Proposal Indiana University Bloomington August 27 2009
  795. Geoffrey Fox, Judy Qiu, Gregor von Laszewski, Marlon Pierce Overview of Community Grids Laboratory Graduate Student Lab Visits to Community Grids Laboratory August 26 2009
  796. Zhenhua Guo Overview of Modern Web Architectures, Standards, Security, and Future Directions Presentation Indiana University August 25 2009
  797. Jaliya Ekanayake Architecture and Performance of Runtime Environments for Data Intensive Scalable Computing Doctoral Showcase SC09 Portland Oregon November 14-20 2009
  798. Geoffrey Fox and Marlon Pierce (presenter) Cloud Computing for Geophysics: Virtualization of Infrastructure ACES2009 at AOGS Asia Oceania Geosciences Conference , Singapore, August 11-14, 2009
  799. Marlon Pierce QuakeSim Project: Portals and Web Services for Geo-Sciences ACES2009 at AOGS Asia Oceania Geosciences Conference , Singapore, August 11-14, 2009
  800. Gregor von Laszewski Towards Green Aware Computing at Indiana University IU Energy Conference Bloomington/Indianapolis Indiana August 6-7 2009
  801. Shrideep Pallickara Lightweight Streaming-based Runtime for Cloud Computing: granules Presentation Indiana University July 22 2009
  802. Judy Qiu Large Scale DNA Sequence Analysis and Biomedical Computing using MapReduce, MPI and Threading Workshop on Enabling Data-Intensive Computing: from Systems to Applications Pittsburgh July 30-31 2009
  803. Judy Qiu, Gilbert Liu Childhood Obesity Studies with Multicore Robust Data Mining , CTR Pilot Grant review meeting, Health Information and Translational Sciences Building, Indianapolis July 8,2009
  804. Zhenhua Guo Authentication and Authorization in Web Systems Presentation Indiana University June 30 2009
  805. Zhenhua (Gerald) Guo and Marlon Pierce OAuth Security for Gateways part of Tutorial and demonstration at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 20099
  806. Marlon Pierce Installing and Building GTLAB part of Tutorial at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 20099
  807. Marlon Pierce (IU), Suresh Marru (IU), Raminder Singh (IU), Chathura Herath (IU), Gregor von Laszewski (IU), Fungang Wang (RIT), Mary Thomas (SDSU), Nancy Wilkins-Diehr (SDSC), Jeff Sale (SDSC), Maytal Dahan (TACC), Rion Dooley (TACC), and Wenjun Wu (UC) OGCE Overview: Portals, Services, Workflows, Gadgets, and Tags part of Tutorial at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009
  808. Xiaoming Gao, Mike Lowe, Marlon Pierce, Virtual Block Store Poster at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009
  809. Chin Hua Kong, Sangmi Lee Pallickara and Marlon Pierce Fault Detection of TeraGrid Resources Using Inca Poster at TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009
  810. Marlon Pierce (IU), Suresh Marru (IU), Raminder Singh (IU), Chathura Herath (IU), Gregor von Laszewski (IU), Fungang Wang (RIT), Mary Thomas (SDSU), Nancy Wilkins-Diehr (SDSC), Jeff Sale (SDSC), Maytal Dahan (TACC), Rion Dooley (TACC), and Wenjun Wu (UC) OGCE Overview: Portals, Services, Workflows, Gadgets, and Tags TeraGrid 09 meeting Hyatt Regency Crystal City. June 22-25 2009
  811. Geoffrey Fox (presented by Marlon Pierce) Overview of Cyberinfrastructure and the Breadth of its Application Howard University June 22 2009 Cyberinfrastucture Day
  812. Marlon Pierce Installing and Building GTLAB part of Tutorial at Tutorial Day SDSC San Diego CA June 19 2009
  813. Marlon Pierce (IU), Suresh Marru (IU), Raminder Singh (IU), Chathura Herath (IU), Gregor von Laszewski (IU), Fungang Wang (RIT), Mary Thomas (SDSU), Nancy Wilkins-Diehr (SDSC), Jeff Sale (SDSC), Maytal Dahan (TACC), Rion Dooley (TACC), and Wenjun Wu (UC) OGCE Overview: Portals, Services, Workflows, Gadgets, and Tags part of Tutorial at Tutorial Day SDSC San Diego CA June 19 2009
  814. Geoffrey Fox (presented by Marlon Pierce) Cloud Computing, Data Mining and Cyberinfrastructure Chemistry in the Digital Age Workshop , Penn State University, June 11-12, 2009
  815. Jaliya Ekanayake and Geoffrey Fox Performance Analysis of High Performance Parallel Applications on Virtualized Resources Indiana University June 10 2009
  816. Marlon Pierce, Joe Rinkovsky, Geoffrey Fox, Jaliya Ekanayake, Xiaoming Gao, Mike Lowe, Craig Stewart, Neil Devadasan Cloud activities at Indiana University: Case studies in service hosting, storage, and computing FGDC Sponsored Geospatial Service-Oriented Architecture: Best Practices Workshop American Institute of Architects (AIA) Board Room, 1735 New York Ave., NW, Washington, DC 20006-5292 June 9 2009
  817. Ruan Yang Data Intensive Scalable Computing Poster at CTS 2009 May 18-22, 2009
  818. Ruan Yang Security Poster at CTS 2009 May 18-22, 2009
  819. Ruan Yang SWARM Poster at CTS 2009 May 18-22, 2009
  820. Ruan Yang Flood Grid Poster at CTS 2009 May 18-22, 2009
  821. Ruan Yang A Distributed Framework for Collaborative Annotation of Streams Poster at CTS 2009 May 18-22, 2009
  822. Siddharth Maini AVATS Poster at CTS 2009 May 18-22, 2009
  823. Alex Ho and Geoffrey Fox Clouds and Sensor Grids 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA
  824. Tao Huang, Shrideep Pallickara, Geoffrey Fox A Distributed Framework for Collaborative Annotation of Streams 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA
  825. Siddharth Maini, Joshua Rosen, Marlon E. Pierce, Geoffrey C. Fox AVATS: Audio-Video and Textual Synchronization 2009 International Symposium on Collaborative Technologies and Systems CTS 2009 May 18-22, 2009 The Westin Baltimore Washington International Airport Hotel Baltimore, Maryland, USA
  826. Tao Huang A Distributed Framework for Collaborative Annotation of Streams CTS Practice Talk Indiana University May 14 2009
  827. Siddharth Maini AVATS: Audio-Video and Textual Synchronization CTS Practice Talk Indiana University May 14 2009
  828. Ali Kaplan Collaborative Framework for High-Performance P2P-based Data Transfer in Scientific Computing Indiana University PhD April 28 2009
  829. Geoffrey Fox Science Clouds and Campus Clouds Presentation with Abstract given at CloudSlam09 virtual meeting April 23 2009 7pm
  830. Geoffrey Fox North Dakota Tribal Colleges Cyberinfrastructure Day Overview Cyberinfrastructure Days at United Tribes Technical College April 17 2009
  831. Geoffrey Fox What is High Performance Computing? Union College Albany Workshop on “High Performance Computing at Liberal Arts Colleges” April 7 2009
  832. Xiaohong Qiu, Scott Beason, Seung-Hee Bae, Jaliya Ekanayake, Jong Youl Choi, Yang Ruan presented by Geoffrey Fox Parallel Data Analysis from Multicore to Cloudy Grids Microsoft External Research Symposium Seattle WA March 31 2009
  833. Geoffrey Fox Early Experience with Cloud Technologies Microsoft External Research Symposium Seattle WA March 31 2009
  834. Geoffrey Fox Cyberinfrastructure and its Applications University of Texas Pan American Cyberinfrastructure Day March 27 2009
  835. Ali Kaplan Collaborative Framework for High-Performance P2P-based Data Transfer in Scientific Computing PhD Presentation Practice 24 March 2009
  836. Ahmet Topcu Integrated Collaborative Information Systems Indiana University PhD March 23 2009
  837. Shrideep Pallickara Lightweight Streaming-based Runtime for Cloud Computing Several external Presentations Spring 2009.
  838. Demonstration of Particle Physics using Dryad presented at Microsoft TechFest09 Seattle February 24-25 2009
  839. Tools and Services for Data Intensive Research-2 Poster on Dryad at Microsoft TechFest09 Seattle February 24-25 2009
  840. Tools and Services for Data Intensive Research-1 Poster on Dryad at Microsoft TechFest09 Seattle February 24-25 2009
  841. Ali Kaplan Collaborative Framework for High-Performance P2P-based Data Transfer in Scientific Computing PhD Presentation Practice 19 Februray 2009
  842. Geoffrey Fox Data Mining Meets Physics and Cyberinfrastructure Biocomplexity Institute Spring 2009 Seminar Series, February 17, 2009, Indiana University
  843. Geoffrey Fox PolarGRID Kansas University February 12 2009
  844. Geoffrey Fox CReSIS Cyberinfrastructure Kansas University February 10 2009
  845. Ahmet Sayar High Performance, Federated, Service-Oriented Geographic Information Systems Indiana University PhD Presentation January 28 2009
  846. Ahmet Sayar High Performance Federated Geographical Information Systems Group Presentation January 17 2009 Showers Building, Bloomington IN 47404
  847. Ahmet Topcu Internet Documentation and Integration of Metadata (IDIOM) Group Presentation January 15 2009 Showers Building, Bloomington IN 47404
  848. Geoffrey Fox Times they are a-changin' Clouds and Multicore challenge Computer Science Computer Science Undergraduate Honors Program January 12 2009
  849. Geoffrey Fox Remarks on EOT and Cyberinfrastructure iPlant Collaborative Cyberinfrastructure Workshop Biosphere 2 Arizona January 7-9 2009
  850. SALSA Project for Data Intensive Scientific Analyses (2) at the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  851. SALSA Project for Data Intensive Scientific Analyses (1) at the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  852. Sangmi Lee Pallickara and Marlon Pierce SWARM: Scheduling Large-scale Jobs over the Loosely-Coupled HPC Clusters Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 12 2008
  853. Jaliya Ekanayake, Shrideep Pallickara and Geoffrey Fox MapReduce for Data Intensive Scientific Analyses ( PDF ) Regular session December 12 at IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  854. Geoffrey Fox and Shrideep Pallickara Cyberinfrastructure Capabilities at CGL Presentation via videoconferencing to Virginia Tech December 12 2008
  855. Kangseok Kim, Marlon Pierce (presenter), and Rajarshi Guha, SQMD: Architecture for Scalable, Distributed Database System built on Virtual Private Servers , eScience for Cheminformatics and Drug Discovery workshop at e-Science 2008 Conference , Indianapolis, IN, Dec 12, 2008
  856. Youngik Yang, Jong Youl Choi, Kwangmin Choi, Marlon Pierce, Dennis Gannon and Sun Kim BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment Proceedings of the IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  857. Geoffrey Fox Programming Abstractions for Multicore Clouds at Abstractions for Distributed Applications and Systems workshop December 11 2008 at IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  858. Jim Basney, Stuart Martin, JP Navarro, Marlon Pierce, Tom Scavo, Leif Strand, Tom Uram, Nancy Wilkins-Diehr, Wenjun Wu, Choonhan Youn The Problem Solving Environments of TeraGrid, Science Gateways, and the Intersection of the Two at PSE Workshop08 December 11 in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008
  859. Seung-Hee Bae Parallel Multidimensional Scaling Performance on Multicore Systems at workhop on Advances in High-Performance E-Science Middleware and Applications December 11 in Proceedings of eScience 2008 Indianapolis IN December 7-12 2008
  860. Geoffrey Fox Multicore for Science at Assessing the Potential Impact and Challenges of ManyCore Processors on eScience Panel Discussion December 11 2008 moderated by Dennis Gannon at IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  861. Geoffrey Fox Distributed and Parallel Programming Environments and their performance (work of Service Aggregated Linked Sequential Activities: SALSA Multicore (parallel datamining) research Team at IUB Judy Qiu, Scott Beason, Jong Youl Choi, Seung-Hee Bae, Jaliya Ekanayake, Yang Ruan, Huapeng Yuan) and in different layoout Distributed and Parallel Programming Environments and their performance Keynote talk at Microsoft Research eScience Workshop December 9 2008 IEEE International Conference on e-Science. Indianapolis. 2008. December 7-12 2008
  862. Marlon Pierce, Suresh Marru, Stephen Simms, and Craig Stewart, Science Gateways as a Way to Support e-Science and Virtual Organizations via the TeraGrid , tutorial at e-Science 2008 Conference , Indianapolis, Indiana December 7 2008. Individual Presentations
  863. Marlon Pierce Building Science Gateways
  864. Marlon Pierce, Suresh Marru, Gregor von Laszewski, Mary Thomas, Maytal Dahan, Gopi Kandaswamy, Rion Dooley, and Wenjun Wu OGCE Overview: Services, Gadgets, and Tags
  865. Suresh Marru Example Gateway: LEAD – Linked Environment for Atmospheric Discovery
  866. Marlon Pierce Building the Portal
  867. Marlon Pierce Installing and Building GTLAB
  868. Geoffrey Fox and Marlon Pierce(presenter) Clouds and Web2.0 II: Case Study and Tutorial
  869. Geoffrey Fox Cyberinfrastructure and PolarGrid North Carolina Research and Education Network NCREN Community Day (via video conference) December 5 2008
  870. Xiaohong Qiu Parallel Data mining on Multicore Clusters at UITS Research Technologies Round Table Bloomington Indiana December 3 2008
  871. Geoffrey Fox Earthquake Polar and Sensor Grids Presentation at AIST Japan booth at SC08 Austin Texas November 20 2008
  872. Marlon Pierce, Suresh Marru, Gregor von Laszewski, Mary Thomas, Maytal Dahan, Gopi Kandaswamy, Rion Dooley, and Wenjun Wu, OGCE Overview: Services, Gadgets, and Tags , Presentation to biweekly TeraGrid Gateways teleconference, November 14, 2008.
  873. Marlon Pierce, Suresh Marru, Gregor von Laszewski, Mary Thomas, Maytal Dahan, Gopi Kandaswamy, and Wenjun Wu, Open Grid Computing Environments , Indiana University booth presentation, Supercomputing 2008 SC08 , Austin, TX.
  874. Marlon Pierce, Sangmi Pallickara, Yu Ma, Mike Lowe, Qunfeng Dong, and Samy Meroueh, Indiana University TeraGrid Gateway Support , Indiana University booth poster, Supercomputing 2008 SC08 , Austin, TX.
  875. Jong Y. Choi, Joshua Rosen, Siddharth Maini, Marlon E. Pierce, and Geoffrey C. Fox Collective Collaborative Tagging System Presentation at GCE08 workshop at SC08 Austin Texas November 16 2008
  876. Geoffrey Fox Clouds and Grids Multicore and all that Panel chaired by Dennis Gannon at International Conference on Grid computing, high-performAnce and Distributed Applications (GADA'08) Monterrey, Mexico, November 14 2008
  877. Geoffrey Fox Cyberinfrastructure An Opportunity for UHD Presentation at Cyberinfrastructure day CI@UHD at University of Houston Downtown November 7 2008
  878. Xiaohong Qiu Parallel Data Mining on Multicore and Cluster Systems at The Institute of Computing Technology ( ICT ) of Chinese Academy of Sciences, Beijing, China October 28, 2008
  879. Xiaohong Qiu Parallel Data Mining on Multicore and Cluster Systems at 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 26 2008
  880. Geoffrey Fox Distributed and Parallel Programming Environments and their performance Keynote talk at 7th International Conference on Grid and Cooperative Computing GCC2008 Shenzhen China October 24 2008
  881. Geoffrey Fox Technology Futures and Lots of Sensor Grids Presentation at Community Grids Laboratory October 1 2008
  882. Ahmet Sayar High Performance Federated Geographical Information Systems Presentation Indiana University September 30 2008
  883. Ahmet Topcu Integrated Collaborative Information Systems Practice Presentation Community Grids Laboratory September 29 2008
  884. Geoffrey Fox Multicore and Cloud Futures Panel on “Cloudy Future” at Clusters and Computational Grids for Scientific Computing CCGSC 2008 Highland Lake Inn Flat Rock, North Carolina September 15 2008
  885. Geoffrey Fox Technology Futures and Lots of Sensor Grids APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)
  886. Marlon Pierce QuakeSim Project: Portals and Web Services for Geo-Sciences APRU Association of Pacific Rim Universities 4th Earthquake and Tsunami Symposium August 21 - 22, 2008 University of California, Davis (USA)
  887. Geoffrey Fox Research Issues and IUPUI Informatics Presentation to IUPUI Informatics department Bradford Woods August 15 2008
  888. Geoffrey Fox and Alex Ho Collaboration, Grid, Web 2.0, Cloud Technologies (Longer Version Collaboration, Grid, Web 2.0, Cloud Technologies ) Boeing Seattle Presentation August 14 2008
  889. Marlon Pierce and Geoffrey Fox QuakeSim Quarterly Update Internal Report on QuakeSim August 9 2008
  890. Ahmet Fatih Mustacoglu Event-Based Infrastructure for Reconciling Distributed Annotation Records Indiana University PhD July 31 2008
  891. Ahmet Sayar High Performance Federated and Service-Oriented Geographical Information Systems Presentation Indiana University July 26 2008
  892. Alex Ho Anabas: Taking Collaboration to the Next Level Presentation at Nokia Research Laboratory Palo Alto July 13 2008
  893. Geoffrey Fox and Alex Ho SBIR Final Meeting Collaboration Sensor Grid and Grids of Grids Information Management presentation at Ball Aerospace July 9 2008
  894. Geoffrey Fox and Alex Ho SBIR Final Meeting Collaboration Sensor Grid and Grids of Grids Information Management ( or longer version SBIR Final Meeting Collaboration Sensor Grid and Grids of Grids Information Management ) presentation at Ball Aerospace July 8 2008
  895. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Jaliya Ekanayake, Rajarshi Guha, Shrideep Pallickara, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Data Analysis from Cores to Clouds HPC 2008 High Performance Computing and Grids workshop Cetraro Italy July 3 2008
  896. Marlon Pierce Gadgets and Portlets in GTLAB Internal July 1 2008
  897. Cloud Systems Panel at HPDC 2008 Conference with Geoffrey Fox as moderator June 25 2008
  898. Geoffrey Fox Challenges and New Trends in Data Intensive Science Panel at Data-aware Distributed Computing (DADC) Workshop HPDC Conference Boston June 24 2008
  899. Judy Qiu (presenter), Geoffrey Fox, Huapeng Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Nielsen Parallel Data Mining on Multicore Clusters ICCS 2008: “Advancing Science through Computation” Conference ; ACC CYFRONET and Institute of Computer Science AGH University of Science and Technology Kraków, POLAND; June 23 2008
  900. Jong Youl Choi Machine Learning and Statistical Analysis Oral examination Indiana University June 18 2008
  901. Ahmet Fatih Mustacoglu Event-Based Infrastructure for Reconciling Distributed Annotation Records Thesis Practice Talk Indiana University June 13 2008
  902. Alex Ramirez, Hispanic Association of Colleges and Universities, Geoffrey Fox, Indiana University, Al Kuslikis, American Indian Higher Education Consortium, Richard Alo, University of Houston-Downtown, Karl Barnes, National Association for Equal Opportunity in Higher Education, Diane Baxter, San Diego Supercomputer Center, and Julie Foertsch Engaging Minority-Serving Institutions (MSIs) in Cyberinfrastructure (CI) through CI Days The 3rd annual TeraGrid Conference , TeraGrid '08 All Hands Meeting Riviera Hotel and Casino in Las Vegas Nevada, June 11 2008
  903. Marlon Pierce, Maytal Dahan, Suresh Marru, Gopi Kandaswamy, Gregor von Laszewski and Tom Scavo OGCE Tutorial (slides here ) at The 3rd annual TeraGrid Conference , TeraGrid '08 All Hands Meeting Riviera Hotel and Casino in Las Vegas Nevada, June 9-13 2008
  904. Geoffrey Fox Challenges Facing Modeling and Simulation in HPC Environments Panel remarks Panel at HPCS 2008 at The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Multiconference Nicosia Cyprus June 6 2008
  905. Geoffrey Fox Parallel Computing and Multicore 2008: Tutorial Tutorial at HPCS 2008 at The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Multiconference Nicosia Cyprus June 5 2008
  906. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen CCR Multicore Performance Tutorial at at HPCS 2008 at The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Multiconference Nicosia Cyprus June 5 2008
  907. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Data mining on Multicore Systems Paper at HPCS 2008 at The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Multiconference Nicosia Cyprus June 4 2008
  908. Geoffrey Fox Multicore Grids and the Data Deluge Keynote at HPCS 2008 at The 22nd EUROPEAN CONFERENCE ON MODELLING AND SIMULATION (ECMS 2008) Multiconference Nicosia Cyprus June 4 2008
  909. S Jha, A Merzky, G Fox Clouds Provide Grids with Higher- Levels of Abstraction and Explicit Support for Usage Modes or Clouds, Grids, and the Rest: An attempted clarification Cloud workshop at OGF23 Barcelona Spain June 2 2008
  910. Geoffrey Fox OGF23 eScience Highlights Introductory remarks at OGF23 Barcelona Spain June 2 2008
  911. Geoffrey Fox OGF eScience Function GFSG meeting at OGF23 Barcelona Spain June 1 2008
  912. Marlon Pierce Building Science Gateways Research Technologies Roundtable Indiana University May 29 2008
  913. Ahmet Sayar High Performance Federated and Service Oriented Geographic Information Systems Indiana University Practice Presentation May 26 2008
  914. Geoffrey Fox Lolbear and Lolcloud May 21 2008. see Lolcat Wikipedia article
  915. Jaliya Ekanayake, Shrideep Pallickara, and Geoffrey Fox A Collaborative Framework for Scientific Data Analysis and Visualization at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 21 2008
  916. Ahmet Fatih Mustacoglu Geoffrey C. Fox Hybrid Consistency Framework for Distributed Annotation Records in a Collaborative Environment at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 21 2008
  917. Marlon Pierce, Geoffrey Fox, Joshua Rosen, Siddharth Maini, and Jong Youl Choi Social Networking for Research Communities Using Tagging and Shared Bookmarks: a Web 2.0 Application at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 21 2008
  918. Geoffrey Fox, Alex Ho, Rui Wang, Edward Chu and Isaac Kwan A Collaborative Sensor Grids Framework at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 20 2008
  919. Geoffrey Fox and Marlon Pierce Clouds and Web2.0 II: Case Study and Tutorial Tutorial at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19 2008
  920. Geoffrey Fox and Marlon Pierce Clouds and Web2.0 Introduction (older ppt ) Tutorial at 2008 International Symposium on Collaborative Technologies and Systems (CTS 2008) at The Hyatt Regency Irvine Irvine, California, USA May 19 2008
  921. Geoffrey Fox, Rajarshi Guha, Kevin E. Gilbert, Marlon Pierce, David Wild Highlights of the Indiana University Exploratory Chemical Informatics Center prepared for NIH meeting May 17 2008
  922. Geoffrey Fox Technology Futures for ACES: Clouds Web2.0 and Multicore ACES group meeting Cairns Australia May 15 2008
  923. Marlon Pierce QuakeSim Project: Portals and Web Services for Geo-Sciences ACES group meeting Cairns Australia May 15 2008
  924. Ahmet Sayar High Performance Federated and Service Oriented Geographic Information Systems Indiana University Practice Presentation May 3 2008
  925. Kangseok Kim Scalable, distributed database system built on multicore systems Report on Cheminformatics work April 30 2008
  926. Marlon Pierce OGCE Building and Testing on NMI NSF NMI meeting at Madison Wisconsin April 29 2008
  927. Geoffrey Fox Vision for Informatics Department Informatics department meeting Indiana University Bloomington April 18 2008
  928. Ahmet Fatih Mustacoglu Event-Based Infrastructure for Reconciling Distributed Annotation Records Thesis Practice Talk Indiana University April 18 2008
  929. Geoffrey Fox OGF eScience Function OGF Board Review April 9 2008
  930. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Robust Datamining for Cheminformatics American Chemical Society Division of Chemical Information Session: Cheminformatics: From Teaching to Research ACS Spring Meeting New Orleans April 8 2008
  931. Rajarshi Guha, and D. Stanton, Combining Global and Local Approaches to Model Domain Applicability 235th ACS National Meeting , New Orleans. April 9 2008
  932. Rajarshi Guha (presenter), Geoffrey Fox, Kevin E. Gilbert, Marlon Pierce, David Wild A Web-Service Approach for Distributed Access to Methods, Data and Models (I Don’t Care Where My Data and Methods Are) American Chemical Society Division of Chemical Information Session: Cheminformatics: From Teaching to Research ACS Spring Meeting New Orleans April 6 2008
  933. Geoffrey Fox and Craig Stewart Opportunities in Cyberinfrastructure and the TeraGrid (partly based on AAAS presentation ) ADMI (Association of Computer and Information Science/Engineering Departments at Minority Institutions) Annual Symposium 2008 Virginia Beach, April 4 2008
  934. Xiaohong Qiu, Geoffrey Fox, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Data Mining with Services on Multi-core Systems (Updated here ) Presentation at Shanghai Many-Core Workshop Shanghai, China March 28, 2008
  935. Xiaohong Qiu, Geoffrey Fox, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Data Mining with Services on Multi-core Systems poster for Shanghai Many-Core Workshop Shanghai, China March 27-28, 2008
  936. Marlon Pierce TeraGrid Gateway Support TeraGrid Gateways biweekly teleconference, March 19 2008
  937. Marlon Pierce Building Science Gateways CGB Indiana University March 19 2008
  938. Geoffrey Fox Clouds Web2.0 and Multicore for Data Intensive Computing LSU Baton Rouge LSU : Center for Computation & Technology Colloquium, March 14 2008
  939. Geoffrey Fox Cyberinfrastructure for e-Education and e-Research (e-Science) Cyberinfrastructure Days New Mexico Highlands University Las Vegas NM March 10-11 2008
  940. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Data Mining on Multi-core Systems Presentation at Microsoft Technical Computing All Hands Meeting March 7 2008
  941. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, Haixu Tang David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Service Aggregated Linked Sequential Activities: High Performance Data Mining on Multi-core Systems Poster at Microsoft Technical Computing All Hands Meeting March 6-7 2008
  942. Marlon Pierce QuakeSim Project: Portals and Web Services for Geophysics 2008 IEEE Aerospace Conference March 1-8 2008, Big Sky MT
  943. Geoffrey Fox Cloud Computing Birds of a Feather Overview at OGF22 Hyatt Regency Cambridge Februaty 27 2008
  944. Ahmet Sayar High Performance Federated and Service Oriented Geographic Information Systems Indiana University Practice Presentation February 23 2008
  945. Ahmet Sayar High Performance Federated and Service Oriented Geographic Information Systems Indiana University Practice Presentation February 7 2008
  946. Seung-Hee Bae OVERVIEW OF MULTICORE, PARALLEL COMPUTING, AND DATA MINING Indiana University Oral Exam Presentation February 5 2008
  947. Seung-Hee Bae OVERVIEW OF MULTICORE, PARALLEL COMPUTING, AND DATA MINING Indiana University Practice Presentation January 29 2008
  948. Geoffrey Fox discussing work with: Seung-Hee Bae, Neil Devadasan, Rajarshi Guha, Marlon Pierce, Xiaohong Qiu, David Wild, Huapeng Yuan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Robust High Performance Optimization for Clustering, Multi-Dimensional Scaling and Mixture Models CGB Indiana University Lunchtime Talk January 22 2008
  949. Ahmet Fatih Mustacoglu Event-Based Hybrid Consistency Framework (EBHCF) for Distributed Annotation Records Indiana University Practice Presentation January 17 2008
  950. Tao Huang OVERVIEW OF DISTRIBUTED MULTIMEDIA COLLABORATION Area Review Oral Presentation January 9 2008
  951. Tao Huang OVERVIEW OF DISTRIBUTED MULTIMEDIA COLLABORATION Practice Presentation January 8 2008
  952. Geoffrey Fox Cyberinfrastructure and e-Research (e-Science) ( Longer version) Presentation at Cyberinfrastructure Days at Elizabeth City State University North Carolina January 4 2008
  953. Geoffrey Fox and Marlon Pierce Community Grids Labiratory work on Virtual Organizations December 20 2007 Poster for NSF Virtual Organizations Meeting Washington DC January 14-16 2008
  954. Siddharth Maini MSI-CIEC Portal ScreenShots December 19 2007
  955. Geoffrey Fox, Huapeng Yuan, Seung-Hee Bae, Xiaohong Qiu , George Chrysanthakopoulos, Henrik Frystyk Nielsen High Performance Multi-Paradigm Messaging Runtime Integrating Grids and Multicore Systems eScience 2007, the 3rd IEEE International Conference on e-Science and Grid Computing Bangalore India December 13 2007
  956. Chris Smith, VP of Standards, OGF Presented with small modifications by Geoffrey Fox Building Blocks for the Grid OGF Workshop at eScience 2007, the 3rd IEEE International Conference on e-Science and Grid Computing Bangalore India December 10 2007
  957. Geoffrey Fox Web 2.0, Grids and Parallel Computing Oxford e-Science Centre December 7 2007
  958. Geoffrey Fox Cyberinfrastructure and Scientific Collaboration Science and Technology in the Pacific Century (STIP) East Asian Colloquium, sponsored by the East Asian Studies Center Indiana University Ballantine Hall 004, November 30 2007
  959. Mehmet Nacar A Component Framework for Building Web Science Gateways and Portals Indiana University PhD Defense Presentation November 27 2007
  960. Geoffrey Fox Net-Centric Sensor Grids Presentation Indiana University November 27 2007
  961. Yili Gong, Marlon E. Pierce and Geoffrey C. Fox Matchmaking Scientific Workflows in Grid Environments Presentation at IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2007), November 19 - 21, 2007, at Cambridge, USA
  962. Geoffrey Fox, Huapeng Yuan, Seung-Hee Bae, Xiaohong Qiu , George Chrysanthakopoulos, Henrik Frystyk Nielsen Multicore Salsa: Parallel Programming 2.0 Booth Presentation at SC07 2007 Reno Nevada November 14 2007
  963. Shrideep Pallickara, Jaliya Ekanayake, Geoffrey Fox Collaborative Analysis of Distributed Data Applied to Particle Physics Experiments Booth Presentation at SC07 2007 Reno Nevada November 13 2007
  964. Marlon Pierce, Suresh Marru, Gregor von Laszewski Open Grid Computing Environments Booth Presentation at SC07 2007 Reno Nevada November 13 2007
  965. Geoffrey C. Fox and Marlon E. Pierce Web 2.0 for eScience: SC07 Education Program Tutorial Education Program Tutorial at SC07 November 12 2007 Reno Nevada
  966. Ali Kaplan, Geoffrey C. Fox and Gregor von Laszewski GridTorrent Framework: A High-performance Data Transfer and Data Sharing Framework for Scientific Computing Presentation at GCE07 Portal Workshop at SC07 2007 Reno Nevada November 11 2007
  967. Mehmet A. Nacar, Marlon E. Pierce, Andrea Donnellan, and Geoffrey C. Fox Building QuakeSim portlets with GTLAB Presentation at GCE07 Portal Workshop at SC07 2007 Reno Nevada November 11 2007
  968. Marlon E. Pierce GCE07 Workshop Introduction Welcome Presentation for GCE07 Portal Workshop at SC07 2007 Reno Nevada November 11 2007
  969. Geoffrey C. Fox Research Strategies Presentation at Chinese Academy of Sciences, Beijing China November 2 2007
  970. Geoffrey C. Fox and Marlon E. Pierce Web 2.0 for E-Science Environments Presentation at Chinese Academy of Sciences, Beijing China November 2 2007
  971. Geoffrey Fox Web 2.0, Grids and Parallel Computing Tsiunghua University at Tsinghua National Laboratory for Information Science and Technology, Beijing November 1 2007
  972. Geoffrey Fox, Huapeng Yuan, Seung-Hee Bae, Xiaohong Qiu , George Chrysanthakopoulos, Henrik Frystyk Nielsen Multicore Salsa: Parallel Programming 2.0 Peking University Computer Science Department Beijing November 1 2007
  973. Mehmet A. Nacar, Marlon E. Pierce, and Geoffrey C. Fox (presenter) GTLAB: Grid Tag Libraries Supporting Workflows within Science Gateways Presentation at 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 30 2007
  974. Geoffrey C. Fox and Marlon E. Pierce Web 2.0 for E-Science Environments Keynote Presentation at 3rd International Conference on Semantics, Knowledge and Grid SKG2007 Xian China October 29 2007
  975. Ahmet Sayar High Performance Federated Service-Oriented Geographic Information Systems Research Presentation at Indiana University Bloomington, October 26 2007
  976. Marlon Pierce The Open Grid Computing Environments Project Fermilab October 25 2007
  977. Geoffrey Fox, Seung-Hee Bae, Rajarshi Guha, Marlon E. Pierce, Xiaohong Qiu, David J. Wild , H. Yuan, Neil M Devadasan, George Chrysanthakopoulos, Henrik Frystyk Nielsen Multicore SALSA: Parallel Computing and Web 2.0 for Cheminformatics and GIS Analysis The 2007 Microsoft eScience Workshop at RENCI (The Friday Center for Continuing Education UNC - Chapel Hill 100 Friday Center Drive Chapel Hill, NC 27599-1020) October 21-23 2007
  978. Chris Dabrowski and Geoffrey Fox Research Group Meeting on Reliability and Robustness in Grid Computing Systems Open Grid Forum OGF21 Seattle Washington October 17 2007
  979. Geoffrey Fox OGF eScience Function Open Grid Forum Board Presentation, OGF21 Seattle Washington October 17 2007
  980. Geoffrey Fox PolarGrid Open Grid Forum Presentation, OGF21 Seattle Washington October 16 2007
  981. Geoffrey Fox Panel Questions for Web 2.0 and Grids Panel at Open Grid Forum Web 2.0 Workshop, OGF21 Seattle Washington October 16 2007
  982. Marlon Pierce E-Chemistry and Web 2.0 Open Grid Forum Web 2.0 Workshop, OGF21 Seattle Washington October 15 2007
  983. Marlon Pierce Social Networking to Support Researchers at Minority Serving Institutions Open Grid Forum Web 2.0 Workshop, OGF21 Seattle Washington October 15 2007
  984. Geoffrey Fox, Aurel Cami, Ahmet Fatih Mustacoglu, Ahmet E. Topcu Semantic Research Grid Open Grid Forum Web 2.0 Workshop, OGF21 Seattle Washington October 15 2007
  985. Geoffrey Fox, Huapeng Yuan, Seung-Hee Bae, Xiaohong Qiu , George Chrysanthakopoulos, Henrik Frystyk Nielsen Multicore Salsa: Parallel Computing and Web 2.0 Open Grid Forum Web 2.0 Workshop, OGF21 Seattle Washington October 15 2007
  986. Geoffrey Fox Cyberinfrastructure Technologies and Applications Keynote presentation at summit Cyberinfrastructure: Innovation At Work at Banff Springs Hotel, Banff Canada October 11 2007
  987. Mehmet Nacar A Component Framework for Building Web Science Gateways and Portals Indiana University Presentation, October 12 2007
  988. Mehmet Nacar A Component Framework for Building Web Science Gateways and Portals Indiana University Presentation, September 28 2007
  989. Marlon Pierce Open Grid Computing Environment Summary September 27 2007
  990. Kangseok Kim A FRAMEWORK FOR SYNCHRONOUS AND UBIQUITOUS COLLABORATION Indiana University PhD Presentation, September 26 2007
  991. Kangseok Kim A FRAMEWORK FOR SYNCHRONOUS AND UBIQUITOUS COLLABORATION Indiana University Presentation, September 25 2007
  992. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance Measurements of CCR and MPI on Multicore Systems Summary September 23 2007
  993. Geoffrey Fox The two faces of Cyberinfrastructure: Grids (or Web 2.0) and Supercomputing: What is their future, which is brighter and how can both communities benefit from each other? Moderator of Panel at Grid 2007 Conference , Omni Austin Downtown Hotel Austin Texas, September 19 2007
  994. Xiaohong Qiu, Geoffrey Fox, H. Yuan, Seung-Hee Bae, George Chrysanthakopoulos, Henrik Frystyk Nielsen Performance of a Multi-Paradigm Messaging Runtime on Multicore Systems Poster at Grid 2007 Conference , Omni Austin Downtown Hotel Austin Texas, September 19 2007
  995. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management of Grid Services Cluster 2007 Conference , Omni Austin Downtown Hotel Austin Texas, September 18 2007
  996. Geoffrey Fox Computational Infrastructure for Policy Informatics at Workshop on Policy Informatics in an Interdependent World, Washington DC September 13 2007
  997. Kangseok Kim A Framework for Synchronous and Ubiquitous Collaboration Indiana University Presentation, August 30 2007
  998. Ahmet E. Topcu Ahmet Fatih Mustacoglu Geoffrey C. Fox and Aurel Cami SRG: A Digital Document-Enhanced Service Oriented Research Grid IEEE International Conference on Information Reuse and Integration (IEEE IRI-2007) August 13 - 15, 2007 Las Vegas, USA
  999. Geoffrey Fox Grids and Web 2.0 supporting eScience STEM Scholars Seminar Indiana University Memorial Union August 1 2007
  1000. Marlon Pierce, Galip Aydin, Zhigang Qi Using Topic-Based Publish/Subscribe for Managing Real Time GPS Streams SAIC Project Review at Indiana University Bloomington, July 30 2007
  1001. Geoffrey Fox, Marlon Pierce , Rui Wang and Alex Ho Collaboration Grid work at Anabas and Community Grids Laboratory SAIC Project Review at Indiana University Bloomington, July 30 2007
  1002. Ahmet Topcu Integrated Collaborative Information Systems PhD Proposal Presentation, Indiana University Bloomington, July 27 2007
  1003. Ali Kaplan Performance oriented Data Transfer and Sharing Framework for Scientific Computing PhD Proposal Presentation, Indiana University Bloomington, July 26 2007
  1004. Ahmet Topcu Integrated Collaborative Information Systems Presentation, Indiana University Bloomington, July 26 2007
  1005. Marlon Pierce, Galip Aydin, Zhigang Qi Using Topic-Based Publish/Subscribe for Managing Real Time GPS Streams Project Review with Ball Aerospace at Indiana University Bloomington, July 25 2007
  1006. Rui Wang Grid Builder Status Project Review with Ball Aerospace at Indiana University Bloomington, July 25 2007
  1007. Jaliya Ekanayake Qualifying Exam PhD Proposal Presentation, Indiana University Bloomington, July 19 2007
  1008. Jaliya Ekanayake Qualifying Exam Practice Presentation, Indiana University Bloomington, July 17 2007
  1009. Geoffrey Fox, Richard Alo, Karl Barnes, Diane Baxter, Julie Foertsch, Al Kuslikis, Alex Ramirez MINORITY SERVING INSTITUTIONS CYBERINFRASTRUCTURE INSTITUTE (MSI-CII Poster at Cyberinfrastructure - Training, Education, and Mentoring (CI-TEAM) Community Workshop July 9-11 2007, The Fairmont Washington, D.C 2401 M Street, NW Washington, District of Columbia, US 20037
  1010. Richard Alo, Karl Barnes, Diane Baxter, Geoffrey Fox, Al Kuslikis, Alex Ramirez MINORITY SERVING INSTITUTIONS CYBERINFRASTRUCTURE EMPOWERMENT COALITION (MSI-CIEC) Poster at Cyberinfrastructure - Training, Education, and Mentoring (CI-TEAM) Community Workshop July 9-11 2007, The Fairmont Washington, D.C 2401 M Street, NW Washington, District of Columbia, US 20037
  1011. Harshawardhan Gadgil, Geoffrey C. Fox, Shrideep Pallickara, Marlon Pierce Scalable, Fault-tolerant Management in Service Oriented Architecture Poster at The 16th IEEE International Symposium on High Performance Distributed Computing Monterey California June 27 2007
  1012. Craig A. Stewart Matthew Link, D. Scott McCaulay, Greg Rodgers, George Turner, David Hancock, Richard Repasky, Faisal Saied, Marlon Pierce, Ross Aiken, Matthias Mueller, Matthias Jurenz, Matthias Lieber Implementation and experience with a 20.4 TFLOPS IBM BladeCenter cluster International Supercomputer Conference in Dresden, Germany June 26 2007
  1013. Geoffrey Fox Application Panel MANYCORE Computing 2007 at Manycore Computing Workshop June 20 and 21, 2007 Crowne Plaza Hotel, 1113 Sixth Avenue, Seattle, WA
  1014. Shrideep Pallickara, Hasan Bulut, and Geoffrey Fox. Fault-Tolerant Reliable Delivery of Messages in Distributed Publish/Subscribe Systems Presentation at the 4th IEEE International Conference on Autonomic Computing. Jacksonville, Florida. June 13 2007
  1015. Richard A. Aló, Presenter, Karl Barnes, NAFEO; Diane Baxter, SDSC; Al Kuslikis, AIHEC; Geoffrey Fox, Indiana University; Alex Ramirez, HACU. Shantuan Coleman, Director, MSI-CIEC; Julie Foertsch, Evaluator, Wisconsin CI-TEAM Advances in the MSI Community and the MSI Cyber Infrastructure Empowerment Coalition MSI-CIEC Presentation at TeraGrid 2007 Conference Madison Wisconsin June 6 2007
  1016. Dr. Linda Hayden, Dr. Geoffrey Fox and Dr. Prasad Gogineni Cyberinfrastructure for Remote Sensing of Ice Sheets Presentation at TeraGrid 2007 Conference Madison Wisconsin June 6 2007
  1017. Mehmet A. Nacar, Jong Youl Choi, Marlon Pierce, Geoffrey Fox Building Grid Portals with OGCE: Big Red Portal and GTLAB Presentation at TeraGrid 2007 Conference Madison Wisconsin June 5 2007
  1018. Marlon Pierce OGCE Short Summary Software Provider Forum at TeraGrid 2007 Conference Madison Wisconsin June 5 2007
  1019. Marlon Pierce and Jim Myers Gateways and Cyberenvironments and Web 2.0 Birds of a Feather at TeraGrid 2007 Conference Madison Wisconsin June 5 2007
  1020. Geoffrey Fox Linking Programming models between Grids, Web 2.0 and Multicore Distributed Programming Abstractions Workshop NESC Edinburgh UK May 31 2007 Slideshare
  1021. Beytullah Yildiz Distributed Handler Architecture (DHArch) Indiana University PhD Defense Presentation May 28 2007
  1022. Beytullah Yildiz Distributed Handler Architecture (DHArch) Research Presentation at Indiana University Bloomington, May 25 2007
  1023. Ahmet Fatih Mustacoglu, Ahmet E. Topcu, Aurel Cami and Geoffrey C. Fox Event-Based Model for Reconciling Digital Entities 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007) May 23 2007
  1024. Zao Liu, Marlon Pierce, Geoffrey Fox Federated Web Map Cache Server: A “Web 2.0 Meets SOA” Case Study 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007) May 23 2007
  1025. Geoffrey Fox and Marlon Pierce Web 2.0 in a Web Services and Grid Context Part I: CTS2007 Web 2.0 Tutorial Part I of Tutorial at 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007) May 21 2007 Slideshare
  1026. Marlon Pierce and Geoffrey Fox Web 2.0 Tutorial: Part 2 Part II of Tutorial at 2007 International Symposium on Collaborative Technologies and Systems (CTS 2007) May 21 2007 Slideshare
  1027. Geoffrey Fox Grids Challenged by a Web 2.0 and Multicore Sandwich Seventh IEEE International Symposium on Cluster Computing and the Grid — CCGrid 2007, Keynote Talk Rio de Janeiro Brazil May 15 2007
  1028. Geoffrey Fox OGF eScience and OGF Software OGF20 GFSG Presentation Manchester UK May 6 2007
  1029. Geoffrey Fox Grid of Grids for Information Management Presentation on SBIR Progress Dayton OH May 4 2007
  1030. Fatih Mustacoglu Event-Based Model for Reconciling Digital Entries Indiana University PhD Proposal Presentation Bloomington, May 3 2007
  1031. Mehmet Aktas Information Federation in Grid Information Services Indiana University PhD Presentation May 3 2007
  1032. Gary Wiggins for Geoffrey Fox Indiana University Chemical Informatics and Cyberinfrastructure Collaboratory April 30, 2007 at NIH MLSCN/ECCR Meeting , April 30th - May 1st in Philadelphia, PA
  1033. Rajarshi Guha and Stephan Schürer The Development and Deployment of Predictive Toxicology Models NIH MLSCN/ECCR Meeting , April 30th - May 1st in Philadelphia, PA
  1034. Hasan Bulut High Performance Recording and Manipulation of Distributed Streams Indiana University PhD Presentation April 24 2007
  1035. Hasan Bulut Scaling and Fault Tolerance for Distributed Messages in a Service and Streaming Architecture Research Presentation at Indiana University Bloomington, April 19 2007
  1036. Geoffrey Fox Real Time, Web 2.0, and Grid Systems INGRID 2007 - Instrumenting the Grid 2nd International Workshop on Distributed Cooperative Laboratories - S.Margherita Ligure Portofino, ITALY, April 18 2007 Slideshare
  1037. Geoffrey Fox Computational Science and the School of Informatics at Indiana University IU/HBCU STEM Initiative IUPUI April 11 2007 Geoffrey Fox
  1038. Geoffrey Fox Lessons on Process and Standards in other science communities presentation at IMAG Model Sharing Strategies Workshop at NIH April 10 2007
  1039. Marlon Pierce Web Service Foundations: WSDL and SOAP I590 Class IUPUI April 5 2007
  1040. Harshawardhan Gadgil Scalable, Fault-tolerant Management of Grid Services: Application to Messaging Middleware Indiana University PhD Presentation April 5 2007
  1041. Shrideep Pallickara, Jaliya Ekanayake & Geoffrey Fox A Scalable Approach for the Secure and Authorized Tracking of the Availability of Entities in Distributed Systems Talk at the 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS). Longbeach, California. 26-30 March 2007
  1042. Ahmet Fatih Mustacoglu Event-Based Consistency Model and Annotation Tools Services for Supporting Collaborative Cyberinfrastructure Based Scientific Research Research Presentation at Indiana University Bloomington, March 28 2007
  1043. Harshawardhan Gadgil Scalable, Fault-tolerant Management of Grid Services: Application to Messaging Middleware Research Presentation at Indiana University Bloomington, March 27 2007
  1044. Geoffrey Fox Informatics and Particle Physics Experiments lecture at I573 Class March 27 2007
  1045. Mehmet Aktas Managing Metadata in Service Architectures Research Presentation at Indiana University Bloomington, March 23 2007
  1046. Beytullah Yildiz Distributed Handler Architecture (DHArch) Research Presentation at Indiana University Bloomington, March 23 2007
  1047. Geoffrey Fox Applications and Runtime for multicore/manycore Microsoft March 21 2007
  1048. Hasan Bulut Scaling and Fault Tolerance for Distributed Messages in a Service and Streaming Architecture Research Presentation at Indiana University Bloomington, March 16 2007
  1049. Geoffrey Fox Overview of Chemical Informatics and Cyberinfrastructure Collaboratory Project Summary March 15 2007
  1050. Geoffrey Fox Web 2.0 and Grids Chicago Computation Institute Workshop March 4 2007
  1051. Geoffrey Fox Summary of Community Grids Laboratory work on multi-core chips March 1 2007
  1052. Geoffrey Fox Parallel Computing 2007: Lessons for a Multicore Future from the Past lectures at Microsoft February 26-March 1 2007 with two slideshare presentations Overview and Bring your own parallel application
  1053. Geoffrey Fox Notes on Collaboration Grids February 23 2007
  1054. Polar Grid Minority-Serving Institutions Cyberinfrastructure Institute (MSICI2) Highlight February 9 2007
  1055. Navajo Technical College Grid CI-TEAM Minority-Serving Institutions CyberInfrastructure Empowerment Coalition (MSI-CIEC) Highlight February 9 2007
  1056. David Wild and Geoffrey Fox Cheminformatics and Cyberinfrastructure Bioinformatics Retreat Bradford Woods Indiaana February 3 2007
  1057. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Managing Grid and Web Services and their exchanged messages at OGF19 Workshop on Reliability and Robustness, Friday Center Chapel Hill NC January 31 2007
  1058. Marlon Pierce Open Grid Computing Environments www.collab-ogce.org at OGF19 Software Developers Track, Friday Center Chapel Hill NC January 29 2007
  1059. Geoffrey Fox Web 2.0 and Grids at OGF19 Web 2.0 Tutorial , Friday Center Chapel Hill NC January 29 2007
  1060. Zao Liu, Marlon Pierce (presenter), Sunghoon Ko, Geoffrey Fox, Neil Devadasan Concurrent Web Map Cache Server: A “Web 2.0 Meets SOA” Case Study at OGF19 Web 2.0 Tutorial , Friday Center Chapel Hill NC January 29 2007
  1061. Geoffrey Fox eScience Function at OGF19 GFSG Meeting, Friday Center Chapel Hill NC January 28 2007
  1062. Marlon Pierce QuakeSim: Grid Computing, Web Services, and Portals for Earthquake Science Department of Mechanical Engineering IUPUI January 25 2007
  1063. Galip Aydin Service Oriented Architecture for Geographic Information Systems Supporting Real Time Data Grids Indiana University PhD Presentation January 15 2007
  1064. Geoffrey Fox Global Grids Web 2.0 and Globalization Informatics Colloquium Indiana University January 12 2007
  1065. Geoffrey Fox Cyberinfrastructure across the Globe Seminar to Indiana University Computer Science Honours Students January 8 2007
  1066. Mehmet Aktas Managing Dynamic Metadata and Context or PowerPoint2007 Research Presentation at Indiana University Bloomington, December 28 2006
  1067. Xiaohong Qiu Message-based MVC and High Performance Multi-core Runtime Research Presentation at Indiana University Bloomington, December 21 2006
  1068. Beytullah Yildiz Distributed Handler Architecture Research Presentation at Indiana University Bloomington, December 12 2006
  1069. Robert Granat, Galip Aydin, Zhigang Qi, and Marlon Pierce, GPS Sensor Web Time Series Analysis Using SensorGrid Technology with abstract GPS Sensor Web Time Series Analysis Using SensorGrid Technology American Geophysical Union AGU Fall Meeting , Moscone Conventon Center, San Francisco, CA, USA, 12 December 2006.
  1070. Yehuda Bock, Frank Webb, Sharon Kedar, Marlon Pierce, Michael Scharber, Donald Argus, Galip Aydin, Ruey-Juin Chang, Danan Dong, Robert Granat, Paul Jamason, Brian Newport, Susan Owen, Jay Parker, George Wadsworth, Earth Science Community IT Resources through a Unified Data and Analysis Portal and Poster , American Geophysical Union AGU Fall Meeting , Moscone Conventon Center, San Francisco, CA, USA, 12 December 2006. See also the SCIGN Data Portal
  1071. Geoffrey Fox OGF eScience Function OGF GFSG Meeting Amsterdam, December 7 2006.
  1072. Geoffrey Fox OGF eScience Function Open Grid Forum OGF Workshop at Second IEEE International Conference on eScience and Grid Computing, Royal Tropical Institute Amsterdam, December 6 2006
  1073. Yili Gong Anycast in Delay Tolerant Networks 49th annual IEEE Global Telecommunications Conference. GLOBECOM 2006 San Francisco California, November 29 2006
  1074. Galip Aydin High Performance Web Service Architecture for Sensors and Geographic Information Systems Research Presentation at Indiana University Bloomington, November 22 2006
  1075. Harshawardhan Gadgil Scalable, Fault-tolerant Management of Grid Services: Application to Messaging Middleware Research Presentation at Indiana University Bloomington, November 22 2006
  1076. Marlon Pierce, Ahmet Sayar, Galip Aydin, Mehmet Aktas, Harshawardhan Gadgil, Zhigang Qi, Zao Liu QuakeSim Work: Web Services, Portlets, Real Time Data Services NASA HQ Project Review, Washington DC November 21 2006
  1077. Yili Gong Anycast in Delay Tolerant Networks Research Presentation at Indiana University Bloomington, November 21 2006
  1078. Geoffrey Fox OGF eScience Function SC06 OGF function meeting, Tampa Florida, November 13 2006
  1079. Marlon Pierce Chemical Informatics Data Services Booth Presentation at SC06 Tampa Florida, November 12-17 2006
  1080. Marlon Pierce, Jong Youl Choi OGCE Portal Software for Big Red and the TeraGrid Booth Presentation at SC06 Tampa Florida, November 12-17 2006
  1081. Marlon Pierce, Ahmet Sayar, Galip Aydin, Mehmet Aktas, Harshawardhan Gadgil, Zhigang Qi Integrating Geographical Information Systems and Grid Applications Booth Presentation at SC06 Tampa Florida, November 12-17 2006
  1082. Mehmet Nacar, Marlon Pierce, Gordon Erlebacher, Geoffrey Fox Designing Grid Tag Libraries and Grid Beans . Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006
  1083. Hao Yin, Sofia Brenes-Barahona, Donald F. McMullen, Marlon Pierce, Kianosh Huffman, Geoffrey Fox, A PERMIS-based Authorization Solution between Portlets and Back-end Web Services . Second International Workshop on Grid Computing Environments GCE06 at SC06, Tampa, FL. Nov. 12-13 2006
  1084. Geoffrey Fox Community Grids for Minority-Serving Institutions (MSI) SC06 Grid Interoperability Workshop ( TeraGrid Institute ) Tampa Florida, November 12 2006
  1085. Mehmet Aktas Managing Dynamic Metadata and Context Research Presentation at Indiana University Bloomington, November 10 2006
  1086. Mehmet Nacar Designing Grid Tag Libraries and Grid Beans Research Presentation at Indiana University Bloomington, November 7 2006
  1087. Geoffrey Fox Grids and the School of Informatics at Indiana University Colloquium at Sun Yat-sen University Guangzhou China, November 4 2006
  1088. Geoffrey Fox for Mehmet Aktas, Sangyoon Oh and Marlon Pierce XML Metadata Services 2nd International Conference on Semantics, Knowledge and Grid (SKG2006), Guilin China, November 3 2006
  1089. Geoffrey Fox Web 2.0, Knowledge and the Semantic Grid 2nd International Conference on Semantics, Knowledge and Grid (SKG2006), Guilin China, November 2 2006
  1090. Geoffrey Fox Conference Introduction 2nd International Conference on Semantics, Knowledge and Grid (SKG2006), Guilin China, November 2 2006
  1091. Marlon Pierce Chemical Informatics on Big Red Techpoint's Indiana Tech Summit 9 , at the Indiana Convention Center, Indianapolis, October 31 2006.
  1092. Zao Liu, Marlon Pierce, Geoffrey Fox, Neil Devadasan Concurrent Web Map Cache Server: A Vision for IndianaMap Presentation at Indiana Geographic Information Council , Indianapolis Indiana, October 27 2006
  1093. Geoffrey Fox Lessons from the Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute [MSI-CI2] SACNAS (Society for Advancement of Chicanos and Native Americans in Science) National Conference Session organized by Chaitan Baru and Ann Gates, Tampa Florida, October 27 2006
  1094. Gurhan Gunduz A Framework for Network Monitoring and Performance Based Routing in Distributed Middleware Systems Presentation for Syracuse University PhD October 25 2006
  1095. Geoffrey Fox Research and Funding Strategies School of Informatics Art of Research Funding workshop October 25 2006
  1096. Geoffrey Fox Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute [MSI-CI2] and CI Empowerment Coalition MSI-CIEC Presentation a Bring IT On! Indiana University Bloomington, October 21 2006
  1097. Geoffrey Fox Cyberinfrastructure to integrate simulation, data and sensors for collaborative eScience in CRESIS CERSER and CRESIS Meeting Elizabeth City State University North Carolina, October 19 2006
  1098. Geoffrey Fox Overview of Chemical Informatics and Cyberinfrastructure Collaboratory CICC Advisory Group Meeting Bloomington Indiana, October 18, 2006
  1099. Marlon Pierce CICC Web Services CICC Advisory Group Meeting Bloomington Indiana, October 18, 2006
  1100. Ahmet Sayar Approaches to the Integration of Distributed and Heterogeneous Data Resources Research Presentation at Indiana University Bloomington, October 17 2006
  1101. Marlon Pierce Building a Chemical Informatics Grid Microsoft eScience Workshop at The Johns Hopkins University, October 14 2006
  1102. Geoffrey Fox Grid of Grids Information Management Meeting Dayton Ohio, October 12 2006
  1103. Jungkee (Jake) Kim CICC Chemical Compound Mining Workflows Chemical Informatics and Cyberinfrastructure Collaboratory Quarterly Team Meeting Bloomington Indiana, October 6 2006
  1104. Marlon Pierce, Yili Gong, Ahmet Sayar, Galip Aydin, Mehmet Aktas, Harshawardhan Gadgil, Zhigang Qi Integrating Geographical Information Systems and Grid Applications AIST Project Meeting JPL, Pasadena, California, October 4 2006
  1105. Geoffrey Fox Cyberinfrastructure to integrate simulation, data and sensors for collaborative eScience presented at CRESIS University of Kansas October 3 2006
  1106. Collection of CGL Project Pictures September 30 2006
  1107. Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang, A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems Presentation at the 7th IEEE/ACM International Conference on Grid Computing (GRID 2006). Barcelona, Spain; September 28th-29th 2006.
  1108. Marlon Pierce, Ahmet Sayar, Galip Aydin, Mehmet Aktas, Harshawardhan Gadgil, Zhigang Qi Integrating Geographical Information Systems and Grid Applications MOSES Project Meeting Scripps San Diego September 19-20 2006
  1109. Geoffrey Fox 3 Questions for Cluster and Grid Use at Workshop on Clusters and Computational Grids for Scientific Computing 2006 Highland Lake Inn, Asheville North Carolina September 11 2006
  1110. Open Grid Forum OGF eScience Function Geoffrey Fox Washington DC Convention Center September 10 2006
  1111. CICC Poster and its Revision for Inauguration of Big Red Supercomputer August 22 2006 Indiana University
  1112. OGCE Briefing to NSF OCI Marlon Pierce NSF August 22 2006
  1113. Geoffrey Fox Overview of Chemical Informatics and Cyberinfrastructure Collaboratory at CICC Meeting with Michigan MACE Chemical Informatics Center, August 15-16 2006 IUPUI Indianapolis
  1114. Marlon Pierce Cyberinfrastructure for Chemical Informatics at CICC Meeting with Michigan MACE Chemical Informatics Center, August 15-16 2006 IUPUI Indianapolis
  1115. Minjun Wang Grid-based Collaboration Syracuse University PhD Presentation August 2 2006
  1116. Sangyoon Oh Web Service Architecture for Mobile Computing Indiana University PhD Presentation August 1 2006
  1117. Geoffrey Fox and Alex Ramirez Lessons from the Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute [MSI-CI2] NCSA Workshop Enabling Minority Serving Institutes to be Cyberinfrastructure Resource Providers Workshop August 7 2006
  1118. Geoffrey Fox Grids and Parallel Computing in iSERVO International Solid Earth Research Virtual Organization Chinese Earthquake Authority Beijing July 28 2006
  1119. Geoffrey Fox Data and Metadata Architectures in a Robust Semantic Grid Chinese Academy of Sciences Beijing July 28 2006
  1120. Geoffrey Fox Web 2.0 and Grids for Scholarly Research Peking University Beijing China 27 July 2006
  1121. Geoffrey Fox Grid-based Information Architecture for iSERVO International Solid Earth Research Virtual Organization Western Pacific Geophysics Meeting ( WPGM ) 24-27 July 2006 Beijing China
  1122. Geoffrey Fox eScience and Grid Technology and longer version Medical Science Building 326 IUPUI July 21 2006
  1123. Geoffrey Fox Chemical Informatics and Cyberinfrastructure Collaboratory at Indiana University: Talk II Joint meeting of the Molecular Libraries Screening Centers Network (MLSCN) and the Exploratory Centers for Cheminformatics Research (ECCR) July 18 Madison Hotel Washington DC
  1124. Geoffrey Fox Chemical Informatics and Cyberinfrastructure Collaboratory at Indiana University: Talk I Joint meeting of the Molecular Libraries Screening Centers Network (MLSCN) and the Exploratory Centers for Cheminformatics Research (ECCR) July 17 Madison Hotel Washington DC
  1125. Zao Liu, Marlon Pierce, and Geoffrey Fox Concurrent Web Map Cache Server June 7 2006 Coalition of Universities for Spatial Information Sciences (CUSIS) Meeting at POLIS Center IUPUI Indianapolis
  1126. Geoffrey Fox Grids/CI for Scholarly Research and application to Chemical Informatics HPC2006 July 4 2006 Cetraro Italy ( Longer )
  1127. Geoffrey Fox, Alex Ho Grid of Grids Information Management Kick off Meeting Telephone Project discussion June 30 2006
  1128. Geoffrey Fox Grid System Issues June 29 2006 The Minority-Serving Institutions Cyberinfrastructure Institute MSICI 2 Workshop June 26-30, 2006 SDSC
  1129. Marlon Pierce Building a Chemical Informatics Grid June 28 2006 The Minority-Serving Institutions Cyberinfrastructure Institute MSICI 2 Workshop June 26-30, 2006 SDSC. There are more details at CICC site
  1130. Geoffrey Fox Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute [MSI-CI 2 ] June 27 2007 The Minority-Serving Institutions Cyberinfrastructure Institute MSICI 2 Workshop June 26-30, 2006 SDSC
  1131. Marlon Pierce Integrating Geographical Information Systems and Grid Applications Sixth Annual NASA Earth Science Technology Conference ESTC June 27 2006 College Park Maryland
  1132. Jungkee (Jake) Kim CICC Web services and Issues Chemical Informatics and Cyberinfrastructure Collaboratory Quarterly Team Meeting Bloomington Indiana, June 23 2006
  1133. Smitha Ajay Portal Updates Chemical Informatics and Cyberinfrastructure Collaboratory Quarterly Team Meeting Bloomington Indiana, June 23 2006
  1134. Sima Patel VOTables Updates Chemical Informatics and Cyberinfrastructure Collaboratory Quarterly Team Meeting Bloomington Indiana, June 23 2006
  1135. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Managing Grid Messaging Middleware ,Presentation at Challenges of Large Applications in Distributed Environments ( CLADE ) Paris France June 19 2006
  1136. Geoffrey Fox TeraGrid and The Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Empowerment Coalition MSI-CIEC building on MSI-CI Institute [MSI-CI2] Presentation at TeraGrid '06 Indianapolis IN June 12-15 2006
  1137. Ahmet Sayar Federated Service Oriented Information Management PhD. proposal presentation June 7 2006 Indiana University Bloomington CS Department ( Updated )
  1138. Kangseok Kim Designing Universal Framework for Building Collaborative Applications in Heterogeneous Computing Environment PhD. proposal presentation May 26 2006 Indiana University Bloomington CS Department
  1139. Mehmet Nacar Metadata-rich Service Oriented Grid Portals PhD. proposal presentation May 24 2006 Indiana University Bloomington CS Department
  1140. Marlon Pierce Community Grids Lab Overview CICC Video Conferencing Meeting with Michigan MACE Chemical Informatics Center in Bloomington Indiana, May 22 2006
  1141. Geoffrey Fox Service Oriented Collaboration and Community Grids 2006 International Symposium on Collaborative Technologies and Systems CTS2006 May 14-17 2006 Las Vegas NV
  1142. Minjun Wang, Geoffrey Fox and Marlon Pierce Collaboration Entities on Deterministic Finite Automata 2006 International Symposium on Collaborative Technologies and Systems CTS2006 May 14-17 2006 Las Vegas NV
  1143. Fatih Mustacoglu iCalendar Compatible Collaborative Calendar-Server (CCS) Web Services 2006 International Symposium on Collaborative Technologies and Systems CTS2006 May 14-17 2006 Las Vegas NV
  1144. Wenjun Wu, Tao Huang, Geoffrey Fox Building Scalable and High Efficient Java Multimedia Collaboration 2006 International Symposium on Collaborative Technologies and Systems CTS2006 May 14-17 2006 Las Vegas NV
  1145. Geoffrey Fox Earthquake Forecasting Interoperability GGF17 Grid Interoperability Session Tokyo Japan May 11 2006
  1146. Geoffrey Fox What is OGSA? GGF17 OGSA and Alternative Grid Architectures Panel Tokyo Japan May 10 2006
  1147. Ahmet Sayar GIS Sample Screenshots April 30 2006
  1148. Geoffrey Fox Revised Applications and Requirements for Scientific Workflow NSF Workshop on Challenges of Scientific Workflows May 2 2006
  1149. Geoffrey Fox Applications and Requirements for Scientific Workflow NSF Workshop on Challenges of Scientific Workflows May 1 2006
  1150. Geoffrey Fox Applications and Requirements for Scientific Workflow Introduction NSF Workshop on Challenges of Scientific Workflows May 1 2006
  1151. Geoffrey Fox Message Management CRMC Meeting Portland Airport Oregon April 27 2006
  1152. Marlon Pierce Geoffrey Fox Community Grids Lab CICC Activities NIH Meeting April 26 2006
  1153. Geoffrey Fox e-moreorlessanything implemented with Grids P2P and Web Services at I533 Seminar in Chemical Informatics: Molecular Informatics, the Data Grid, and an Introduction to eScience April 18 2006
  1154. Geoffrey Fox The Minority-Serving Institutions Cyberinfrastructure Institute NCSA MSI Summit April 11-12 2006
  1155. Geoffrey Fox and Marlon Pierce ACES Scholars' Grid 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii April 6 2006
  1156. Marlon Pierce, Ahmet Sayar, Galip Aydin, Mehmet Aktas, and Harshawardhan Gadgil Integrating Geographical Information Systems and Grid Applications 5th ACES International Workshop Maui Prince Hotel, Island of Maui, Hawaii April 4-6 2006
  1157. Sima Patel VOTable Services March 22 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1158. Jungkee (Jake) Kim Building CICC Web services March 22 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1159. Geoffrey Fox e-moreorlessanything: The Killer Application; Grids P2P and Web Services: The Killer Technologies Upsilon Pi Epsilon (Computer Science Honor Society) University of Southern California March 29 2006
  1160. Geoffrey Fox A Grid-of-Grids Service Architecture for Net-Centric Operations: Further Discussion GSAW Manhattan Beach March 29 2006 Ground System Architectures Workshop
  1161. Geoffrey Fox A Grid-of-Grids Service Architecture for Net-Centric Operations GSAW Manhattan Beach March 28 2006 Ground System Architectures Workshop
  1162. Mehmet Nacar JSF Custom Grid Tags March 2006 VLAB Meeting, Florida State University
  1163. Marlon Pierce Web Service Foundations: WSDL and SOAP at I533 Seminar in Chemical Informatics: Molecular Informatics, the Data Grid, and an Introduction to eScience March 7 2006
  1164. Marlon Pierce Building Web Portals as Science Gateways at I533 Seminar in Chemical Informatics: Molecular Informatics, the Data Grid, and an Introduction to eScience March 2 2006
  1165. Marlon Pierce An Overview of Computational Grid Technologies at I533 Seminar in Chemical Informatics: Molecular Informatics, the Data Grid, and an Introduction to eScience February 28 2006
  1166. Ahmet Sayar Integrating AJAX Approach into GIS Visualization Web Services IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean
  1167. Minjun Wang, Geoffrey Fox and Marlon Pierce (given by Ahmet Sayar) Thin Client Collaboration Web Services IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean
  1168. Beytullah Yildiz, Experiences in Deploying Services within the Axis Container February 24, 2006, IEEE International Conference on Internet and Web Applications and Services ICIW'06 February 23-25, 2006 Guadeloupe, French Caribbean
  1169. Geoffrey fox Community Grids Laboratory February 22 2006 Bloominton Indiana
  1170. Wenjun Wu Global Multimedia Collaboration System Seminar IIT Chicago February 15 2006
  1171. Geoffrey Fox Web Service Information Systems and Applications , with Longer Version ; Semantic Grid Workshop, February 15 2006, GGF16 Meeting Athens, Greece
  1172. Geoffrey Fox Collaboration Grids Education Grid Community Birds of a Feather, February 15 2006, GGF16 Meeting Athens, Greece
  1173. Geoffrey Fox The Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute MSICII , Grid Education and Training Workshop, February 14 2006, GGF16 Meeting Athens, Greece
  1174. Geoffrey Fox Two Examples of Grids , Defining the Grid Workshop organized by Frederica Darema, February 14 2006, GGF16 Meeting Athens, Greece
  1175. Geoffrey Fox, Shrideep Pallickara, Damodar Yemme, Hasan Bulut and Sima Patel Reliable Messaging for Grids and Web Services and Longer Version , Workshop on Reliability & Robustness in Grid Computing Systems, February 13 2006, GGF16 Meeting Athens, Greece
  1176. Geoffrey Fox Initial Thoughts at The Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute MSICII Planning and Learning Meeting SDSC San Diego January 31 2006
  1177. Geoffrey Fox Introduction to The Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute MSICII Planning and Learning Meeting SDSC San Diego January 30-31 2006
  1178. Geoffrey Fox Semantic Scholars' Grid at January 27 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1179. Marlon Pierce Community Grids Lab CICC Work at January 27 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1180. Sima Patel CICC and VOTables at January 27 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1181. Jungkee (Jake) Kim Building Services for BCI with Taverna at January 27 2006 Chemical Informatics and Cyberinfrastructure Collaboratory Meeting Bloomington IN
  1182. Beytullah Yildiz, Web Service Handler Architecture , Thesis Proposal, Indiana University Bloomington, August 4, 2005.
  1183. Shrideep Pallickara, Geoffrey Fox and Harshawardhan Gadgil On the Creation & Discovery of Topics in Distributed Publish/Subscribe Systems. Talk at the plenary session of IEEE/ACM GRID 2005 workshop November 14 2005
  1184. Shrideep Pallickara NaradaBrokering: Managing data distribution in distributed systems Talk at the NSF VLab Workshop at the University of Minnesota, Minneapolis. August 2005.
  1185. Geoffrey Fox Comments on Software Systems HATC Corporation Beijing, December 6 2005
  1186. Geoffrey Fox Semantic and Streaming Grids ICT Chinese Academy of Sciences Beijing, December 6 2005
  1187. Geoffrey Fox Remarks on Grids in CGL and Worldwide National CIMS Engineering Research Center at Tsinghua University, Beijing China, December 5 2005
  1188. Geoffrey Fox Grids for Real-time and Streaming Applications December 2 2005 Invited Presentation at GCC2005 - the 4th International Conference on Grid and Cooperative Computing November 30-December 3, 2005, Beijing, China with Longer version
  1189. Geoffrey Fox GCC2005 and the Harmony and Prosperity of Civilizations December 2 2005 Introductory remarks at GCC2005 - the 4th International Conference on Grid and Cooperative Computing November 30-December 3, 2005, Beijing, China
  1190. Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce Information Services for Dynamically Assembled Semantic Grids Research Presentation at SKG2005 International Conference on Semantics, Knowledge and Grid Beijing Friendship Hotel November 28 2005
  1191. Geoffrey Fox Services and the Semantic Grid Panel discussion at SKG 2005 International Conference on Semantics, Knowledge and Grid Beijing Friendship Hotel November 28 2005
  1192. Ahmet Sayar Developing GIS Visualization Web Services for Geophysical Applications Proceedings of ISPRS International Society for Photogrammetry and Remote Sensing Workshop Commission II WG/2 METU, Ankara, Turkey, November, 24-25, 2005.
  1193. Mehmet Nacar, Mehmet Aktas, Marlon Pierce, Zhenyu Lu, Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, and David A. Yuen VLab: Collaborative Grid Services and Portals to Support Computational Material Science at GCE'05 Workshop on Grid Computing. Seattle, WA. November 18 2005
  1194. Geoffrey Fox and Alex Ho Use of Grids in DoD Applications and Longer version Demonstration at AFRL Rome Laboratory November 16 2005
  1195. Marlon Pierce and OGCE Collaboration posters for SC05 November 12-18 2005 Seattle
  1196. OGCE Architecture: Portlets and Services for Science Gateways
  1197. OGCE Tools Support Collaboration, Data Management, and Application Development
  1198. OGCE Portal Applications for Grid Computing I
  1199. OGCE Portal Applications for Grid Computing II
  1200. Chemical Informatics and Cyberinfrastructure Collaboratory Meeting October 28 2005
  1201. Chemical Informatics and Cyberinfrastructure Collaboratory Meeting October 21 2005
  1202. Marlon Pierce Building Web Portals as Science Gateways Richard Tapia Conference, October 19-22 2005, Albuquerque, NM
  1203. Geoffrey Fox The Minority-Serving Institutions (MSI) Cyberinfrastructure (CI) Institute [MSI C(I)2] Poster at EPIC All Hands Meeting October 18-19 2005 Albuquerque
  1204. Galip Aydin SensorGrid: High Performance Web Service Architecture for Geographic Information Systems and Background Thesis Proposal October 13 2005 Indiana University Bloomington
  1205. Geoffrey Fox Panel: Revisiting Distributed Simulation and the Grid Talk October 11 2005 at Ninth IEEE International Symposium DS-RT 2005 Distributed Simulation and Real Time Applications' Montreal October 10-12 2005
  1206. Geoffrey Fox Grids for DoD and Real Time Simulations Keynote Talk October 11 2005 at Ninth IEEE International Symposium DS-RT 2005 Distributed Simulation and Real Time Applications' Montreal October 10-12 2005
  1207. Geoffrey Fox Grids for DS-RT 2005 Symposium Tutorial October 9 2005 at Ninth IEEE International Symposium DS-RT 2005 Distributed Simulation and Real Time Applications' Montreal October 10-12 2005
  1208. Marlon Pierce Integrating Geographical Information Systems and Grid Applications at GGF 15 GIS Grid Workshop , October 3-6 2005, Boston, MA
  1209. Marlon Pierce A Portal Architecture Review at GGF 15 Portals Workshop , October 3-6 2005, Boston, MA
  1210. Marlon Pierce Using AJAX at GGF 15 Portals Workshop , October 3-6 2005, Boston, MA
  1211. Marlon Pierce, Shrideep Pallickara Talks at GGF 15 Web Services Workshop , October 3-6 2005, Boston, MA
  1212. Geoffrey Fox Framework for High Performance Grid and Web Services GGF15 Workshop on High Performance Web Services October 2 2005 Boston Ma
  1213. Mehmet Aktas, Galip Aydin, Ahmet Sayar Developing GIS Services Los Alamos Summer 2005
  1214. Shrideep Pallickara, Harshawardhan Gadgil, Geoffrey Fox On the Discovery of Brokers in Distributed Messaging Infrastructures IEEE Cluster 2005, September 27 - 30, 2005, Boston, Massachusetts, USA
  1215. Geoffrey Fox Grids for Real-time and Streaming Applications I-light Worshop September 22 2005 Indianapolis
  1216. Marlon Pierce Portals, Portlets, and Clients to Grid Services IRIS Web Services Workshop, Monterey CA, September 21-23
  1217. Geoffrey Fox Grids for Real-time and Streaming Applications PPAM 2005 – 6th International Conference on Parallel Processing and Applied Mathematics Poznan Poland September 11-14 2005
  1218. Geoffrey Fox, Alex Ho and Marlon Pierce Use of Grids in DoD Applications Project presentation August 25 2005 Bloomington Indiana. See Analysis of Grids for Global Information Grid (GiG) and Network Centric Operations and Warfare (NCOW)
  1219. Ahmet Sayar MESSAGE EXCHANGE FOR Web Service-Based Mapping Services Proceedings of GeoInformatics'05 , Toronto Canada 17-19 August 2005
  1220. Geoffrey Fox and Shrideep Pallickara FINS and FIRMS: Notification and Reliable Messaging for the OMII OMII meeting July 22 2005 Southampton UK
  1221. Marlon Pierce Grids and Portals for VLAB VLAB Workshop, University of Minnesota July 21-23
  1222. Marlon Pierce Implementing Geographical Information System Services for SERVOGrid 4th ESMF Community Meeting, July 20-22 2005
  1223. Geoffrey Fox Grid School Vico Equense Italy July 21 2005
  1224. Harshawardhan Gadgil HPSearch: Service Management & Administration Tool VLAB Meeting Minnesota July 21-23 2005
  1225. Geoffrey Fox Grids for Real-time and Streaming Applications TIWDC 2005 CNIT Tyrrhenian International Workshop on Digital Communications July 4-6 2005
  1226. Marlon Pierce Integrating Geographical Information Systems and Grid Services for Earthquake Forecasting NASA Earth-Sun System Technology Conference University of Maryland, Adelphi, Maryland, June 28 - 30, 2005
  1227. M. P. Thomas, J. Burruss, L. Cinquini, G. Fox, D. Gannon, L. Gilbert, G. von Laszewski, K. Jackson, D. Middleton, R. Moore, M. Pierce, B. Plale, A. Rajasekar, R. Regno, E. Roberts, D. Schissel, A. Seth, and W. Schroeder Poster on Grid Portal Architectures for Scientific Applications for SciDAC 2005 meeting June 26-30 2005 San Francisco
  1228. Mehmet Aktas Managing Dynamic Metadata as Context , The 2005 Istanbul International Computational Science and Engineering Conference (ICCSE2005), June 27-30 2005, Turkey
  1229. Galip Aydin Sensor Grid Internal Presentation June 26 2005
  1230. Jungkee Kim Scalable Hybrid Keyword Search on Distributed Database Workshop on Autonomic Distributed Data and Storage Systems Management, Atlanta, May 25 2005.
  1231. Sangyoon Oh Cost Model and Adaptive Scheme for Publish/Subscribe Systems on Mobile Grid Environments APGAC 2005, Atlanta May 24th 2005
  1232. Sangyoon Oh Publish/Subscribe Systems on Node and Link Error-Prone Mobile Environments Wireless and Mobile Systems Workshop , Wireless and Mobile Systems Workshop, Atlanta May 24th 2005
  1233. Geoffrey Fox Tutorial on GlobalMMCS May 17 2005 at The 2005 International Symposium on Collaborative Technologies and Systems CTS05 Adam's Mark Hotels & Resorts Saint Louis, Missouri, USA
  1234. Geoffrey Fox and Marlon Pierce Community Grids Lab SERVOGrid CCE Review Internal Presentation May 11 2005
  1235. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara HPSearch for Managing Distributed Services IEEE/ACM Cluster Computing and Grid 2005 Conference ( CCGrid 2005 ). Cardiff, UK May 9-12 2005
  1236. Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Robert Granat Scripting based architecture for Management of Streams and Services in Real-time Grid Applications IEEE/ACM Cluster Computing and Grid 2005 Conference ( CCGrid 2005 ). Cardiff, UK May 9-12 2005
  1237. Marlon Pierce Integrating Geographical Information Systems and Grid Services for Earthquake Forecasting Internet 2 Meeting May 2-4 2005 Arlington VA
  1238. Geoffrey Fox Grids: Concepts, Technologies and Applications Presentation for CENDI at NTIS April 25 2005
  1239. Mehmet Aktas Conversational Case Base Recommender Systems for Metadata Discovery Indiana University CS Systems Seminar
  1240. Mehmet Aktas Managing Dynamic Metadata and Context PhD Proposal April 11 2005 Indiana University
  1241. Jungkee Kim Hybrid Search across peer-to-peer Federated Data Florida State University PhD Presentation April 6 2005
  1242. Marlon Pierce Tutorial on Grid Portals HPC2005 April 4 2005 and NCSA portals meeting, Jan 26 2005
  1243. Shrideep Pallickara An Analysis of Notification Related Specifications for Web/Grid applications Presentation at the IEEE ITCC Conference on Information Technology April 4-6, 2005, Las Vegas
  1244. Shrideep Pallickara An Analysis of Reliable Delivery Specifications for Web Services Presentation at IEEE ITCC Conference on Information Technology April 4-6, 2005, Las Vegas
  1245. Minjun Wang Grid-based Collaboration in Interactive Data Language Applications IEEE International Conference on Information Technology April 4-6, 2005, Las Vegas
  1246. Ahmet Uyar Scalable Service Oriented Architecture for Audio/Video Conferencing Syracuse University PhD Presentation March 23 2005
  1247. Geoffrey Fox Algorithms and the Grid ALGORITMY 2005 Conference on Scientific Computing Vysoke Tatry, Podbanske March 13-18, 2005
  1248. Xiaohong Qiu Message-based MVC Architecture for Distributed and Desktop Applications Syracuse University PhD Presentation March 2 2005
  1249. Geoffrey Fox Grids Web Services - The Global Operating system of the World - Its Killer Applications Indiana University CS Honors Students Presentations, February 28 2005
  1250. Sangyoon Oh Optimized Communication for Mobile Applications PhD Proposal February 8 2005 Indiana University
  1251. Marlon Pierce and Geoffrey Fox Summary of SERVOGrid UC Davis iSERVO meeting February 25 2005
  1252. Geoffrey Fox Amplitude Analysis in QCD and the role of Gluonic Excitations Meeting SURA Washington DC February 11 2005
  1253. Geoffrey Fox Possible Architectural Principles for OGSA-UK and other Grids UK e-Science Core Programme Town Meeting London Monday 31st January 2005 “Defining the next Level of Services for e-Science”
  1254. Marlon Pierce Implementing Geographic Information System Grid Services Using Distributed Messaging Systems AGU Fall Meeting San Francisco December 16 2004
  1255. Geoffrey Fox iSERVO International Solid Earth Research Virtual Observatory: Grid/Web Services and Portals Supporting Earthquake Science AGU Fall Meeting San Francisco December 15 2004
  1256. Hasan Bulut Scaling and Fault Tolerance for Distributed Messages in a Service and Streaming Architecture, December 8, 2004. Computer Science Department, Indiana University
  1257. Geoffrey Fox and Marlon Pierce Data Grids for HPC: Geographical Information System Grids PET Internet Seminar to Jackson State University, 7 December 2004
  1258. Minjun Wang Design of a Collaborative System The IASTED International Conference on KNOWLEDGE SHARING AND COLLABORATIVE ENGINEERING ~KSCE 2004~ November 22-24, 2004 St. Thomas, US Virgin Islands
  1259. Geoffrey Fox High Performance Data Streaming in a Service Architecture PET Internet Seminar to Jackson State University, 16 November 2004
  1260. Geoffrey Fox, Jeffrey Frey, Andrew Grimshaw, Steven Newhouse Grid Systems: What is needed from Web Service standards? November 16 2004 at International Conference on Service Oriented Computing Columbia University New York
  1261. Harshawardhan Gadgil Rapid Prototyping and Deployment of Distributed Web / Grid Services in a Service Oriented Architecture using Scripting PhD Thesis Proposal November 14 2004
  1262. Geoffrey Fox Grid Technologies: Foundations for Preservation Environments November 15 2004 Partnerships in Innovation - Serving a Networked Nation National Archives at College Park, Maryland The University of Maryland, College Park, Maryland
  1263. Marlon Pierce The Open Grid Computing Environments Collaboratory OGCE portal demo at SC04 Thursday, Nov 11, 12:30 pm to 1:30 pm. with Additional Material
  1264. Marlon Pierce, Greg Daues, Gopi Kandaswamy, and Liang Fang NCSA Alliance Portal Expedition Demo Alliance/OGCE portal demo at SC04 Wed, Nov 10, 1:00 pm - 1:30 pm with Additional Material
  1265. Geoffrey Fox, Shrideep Pallickara, Savas Parastatidis Towards Flexible Messaging for SOAP Based Services SC04 Technical Program, Pittsburgh November 9 2004
  1266. Mehmet S. Aktas, Marlon Pierce, Geoffrey Fox and David Leake Conversational Case Base Recommender Systems for Metadata Discovery Grid2004 Workshop at SC2004 Pittsburgh November 8 2004
  1267. Marlon Pierce and OGCE Collaboration posters for SC04
  1268. OGCE Release 1 Combines Grid and Collaboration Portlets in CHEF Framework
  1269. Standard Portlet Architecture Supports Reusable Components
  1270. OGCE Portal Applications for Grid Computing I
  1271. OGCE Portal Applications for Grid Computing II
  1272. Geoffrey Fox Architecture of Web Service Grids IIT Chicago Computer Science Colloquium October 25 2004
  1273. Geoffrey Fox and Shrideep Pallickara FIRMS: Federation & Implementation of Reliable Messaging Specifications for Web Services AND FINS: Federation & Implementation of Notification Specifications for Web Services OMII Managed Program meeting Southampton UK, October 21 2004
  1274. Geoffrey Fox Web Service Grids for iSERVO International Workshop on Geodynamics: Observation, Modeling and Computer Simulation University of Tokyo Japan October 14 2004
  1275. Geoffrey Fox 25 years of High Performance Computing: An Application Perspective PET Internet Seminar to Jackson State, FIU and Hawaii University September 28 2004
  1276. Marlon Pierce Portals and Portlets DOD User Interface Specification group meeting Atlanta September 27 2004
  1277. Marlon Pierce Semantic Basics: Markup, Querying, and Reasoning Global Grid Forum Semantic Grid Tutorial Brussels September 21 2004
  1278. Marlon Pierce Developing Grid Portals Using Portlets Global Grid Forum Portal Tutorial Brussels September 21 2004
  1279. Geoffrey Fox CEE and Grid Architectures Internal Seminar on Collaborative Technologies September 15 2004
  1280. Harshawardhan Gadgil, Dr. Geoffrey Fox, Dr. Marlon Pierce HPSearch: Design & Development via Scripting USC AIST Project Meeting August 31 2004
  1281. Geoffrey Fox Web Services and Grid Architecture and their application to Earthquake Science USC AIST Project Meeting August 31 2004
  1282. Geoffrey Fox Architecture of Web Service Grids Institute of Computing Technology (ICT) Chinese Academy of Sciences August 28 2004
  1283. Geoffrey Fox Architecture of Web Service Grids Presentation at Beihang University August 27 2004
  1284. Geoffrey Fox Web Services and Grid Architecture and their application to Earthquake Science Jade Palace Hotel Beijing (863 Project Grid) August 26 2004. (Earthquake Science in following talk)
  1285. Geoffrey Fox and Marlon Pierce SERVO Grid: Solid Earth Research Virtual Observatory Grid/Web Services and Portals Supporting Earthquake Science Jade Palace Hotel Beijing (863 Project Grid) August 26 2004.
  1286. Geoffrey Fox Grids and the Harmony and Prosperity of Civilizations August 24 2004 at the “Beijing Forum” (2004) on The Harmony and Prosperity of Civilizations Beijing August 23-25 2004
  1287. Geoffrey Fox Community Grids Architecture Discussion Community Grids Laboratory Internal Seminar, August 20 2004
  1288. Minjun Wang New Tools In Education The 7th IASTED International Conference on COMPUTERS AND ADVANCED TECHNOLOGY IN EDUCATION ~CATE 2004~ August 16-18, 2004 Kauai, Hawaii, USA
  1289. Geoffrey Fox Web Service based Community Grids for Research and Education Fermilab Computing Division August 17 2004
  1290. Geoffrey Fox Grid and Collaboration work at Community Grids Laboratory AFRL Dayton August 4 2004
  1291. Developing SERVOGrid: e-Science for Earthquake Simulation a tutorial by Marlon Pierce at 2004 Grid Summer School at Vico Equense near Naples Italy July 2004
  1292. Tutorial on Web Services for Grids at 2004 Grid Summer School at Vico Equense near Naples Italy July 2004
  1293. Xiaohong Qiu Web Service Architecture for e-Learning Presentation at EISTA 2004 International Conference on Education and Information Systems: Technologies and Applications, July 23 2004
  1294. Geoffrey Fox, Marlon Pierce SERVO Grid: Solid Earth Research Virtual Observatory Grid/Web Services and Portals Supporting Earthquake Science Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop, Beijing China, July 13 2004
  1295. Marlon Pierce, Galip Aydin GML Data Models and Web Services for GPS and Earthquake Catalogs Fourth ACES (APEC Cooperation for Earthquake Simulation) Workshop, Beijing China, July 13 2004
  1296. Geoffrey Fox NaradaBrokering and GlobalMMCS Uniwaret Beihang University Peking July 12 2004
  1297. Geoffrey Fox Web Service Grids Peking University School of Computer Science July 11 2004
  1298. Xiaohong Qiu Building Desktop Application with Web Services in a Message-based MVC Paradigm Presentation at IEEE International Conference on Web Services, 9 July 2004
  1299. Sangmi Lee and Geoffrey Fox Wireless Reliable Messaging Protocol for Web Services (WS-WRM) IEEE 2nd International Conference on Web Services (ICWS 2004) San Diego July 2004
  1300. Hasan Bulut, Shrideep Pallickara and Geoffrey Fox Implementing a NTP-Based Time Service within a Distributed Brokering System ACM International Conference on the Principles and Practice of Programming in Java, June 16-18, Las Vegas, NV
  1301. Hasan Bulut, Wenjun Wu, Geoffrey Fox, Ahmet Uyar, Shrideep Pallickara, Harun Altay A Web Services Based Streaming Gateway for Heterogeneous A/V Collaboration IC2004, The 5th International Conference on Internet Computing, Las Vegas June 2004
  1302. Geoffrey Fox Community Grid Services RealityGrid Annual Meeting Royal Society London June 16 2004
  1303. Geoffrey Fox iSERVO and SERVOGrid: (International) Solid Earth Research Virtual Observatory Grid/Web Services and Portals Supporting Earthquake Science US-Australia Workshop on High-Performance Grids and Applications, Swiss Grand Hotel, Bondi Beach, Sydney, June 8 2004
  1304. Geoffrey Fox Grid Architecture and Some Core Services US-Australia Workshop on High-Performance Grids and Applications, Swiss Grand Hotel, Bondi Beach, Sydney, June 8 2004
  1305. Geoffrey Fox Current and Future Perspectives of Grid Technology Panel ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING TECHNOLOGY AND APPLICATIONS Cetraro Italy May 31-June 3 2004
  1306. Geoffrey Fox Pervasive Grid and Web Services ADVANCED RESEARCH WORKSHOP ON HIGH PERFORMANCE COMPUTING TECHNOLOGY AND APPLICATIONS Cetraro Italy May 31-June 3 2004
  1307. Geoffrey Fox Status of Grids for HEP and HENP GlueX Collaboration Workshop May 21 2004 Bloomington Indiana
  1308. Geoffrey Fox Current and Future Activities at the Community Grids Laboratory Bradford Woods Indiana May 12 2004
  1309. Andrea Donnellan and Geoffrey Fox Networks and Grids in Solid Earth Science May 3 2004 Computational Geoinformatics Workshop Washington DC
  1310. Geoffrey Fox 25 years of High Performance Computing: An Application Perspective The 24th Conference on High-Speed Computing Salishan Lodge Oregon April 20 2004
  1311. Minjun Wang A Demonstration of Collaborative Web Services and Peer-to-Peer Grids IEEE International Conference on Information Technology: Coding and Computing April 5-7 2004 Las Vegas
  1312. Geoffrey Fox Education and Grid Services prepared for Discussion Meeting on Education and Outreach: Developing a National Initiative (April 8, 2004, Arlington, VA) summarized at Understanding The Universe
  1313. Geoffrey Fox Grid Technologies in Disaster Management & Infrastructure Protection Workshop On HPC & Simulation Applications For Force Protection GDIN 2004, March 29 2004
  1314. Ewa Deelman, Geoffrey Fox, Dennis Gannon GGF10 Workflow Workshop Summary GGF10 Berlin Germany, March 9 2004
  1315. Geoffrey Fox Education and Grid Services JISC Meeting London UK February 26 2004
  1316. Geoffrey Fox NaradaBrokering Grid Messaging and Applications as Web Services Southampton University England February 25 2004
  1317. Geoffrey Fox Portlets and Portals for Grid Computing Johnson Space Center Houston February 2004
  1318. Marlon Pierce Component-Based Portals for Grid Computing NSF Shared Cyberinfrastructure (SCI) Division Principal Investigators Meeting Washington February 19 2004
  1319. Geoffrey Fox Community Grids work on Messaging A/V Conferencing Portals January 30 2003 Cardiff University Wales
  1320. Geoffrey Fox Principles for Collaboration Systems January 22 2004
  1321. Mary Thomas OGCE Consortium Reusable Grid Portal Components Globus World January 22 2004
  1322. Geoffrey Fox Advances and Changes in Simulation Jamuary 20 2004, CTS04/WMC04 Workshop San Diego
  1323. Geoffrey Fox, Wenjun Wu Demonstration of GlobalMMCS Jamuary 19 2004, CTS04 Workshop San Diego
  1324. Wenjun Wu Design and Implementation of Audio/Video Collaboration System Based on Publish/subscribe Event Middleware Jamuary 19 2004, CTS04 Workshop San Diego
  1325. Geoffrey Fox iSERVO and SERVOGrid: (International) Solid Earth Research Virtual Observatory Grid/Web Services and Portals Supporting Earthquake Science January 16 2004 Embassy Suites North Los Angeles Airport, CIG Meeting
  1326. Bryan Carpenter, Geoffrey Fox Java Grande Update December 19 2003, Sun Microsystems visit Menlo Park CA
  1327. Geoffrey Fox S-Matrix and the Grid GlueX Collaboration Meeting December 12 2003
  1328. Geoffrey Fox Overview of e-Science and the Grid Access Grid Presentation to Jackson State University Dec 8 2003
  1329. Geoffrey Fox HPSearch and NaradaBrokering: Workflow Scripting and Stream Management Edinburgh December 2003
  1330. Geoffrey Fox Community Grids work on Grids e-Science CyberInfrastructure and Peer-to-Peer Networks November 25 2003 Indiana November 25 2003
  1331. Geoffrey Fox Collaboration and Grid Technologies SC03 Education Session November 18 2003
  1332. Geoffrey Fox The Great Academia/Industry Grid Debate SC03 Grid2003 Workshop Panel November 17 2003
  1333. Geoffrey Fox Applications as Web (Grid) Services and Related Issues Argonne National Laboratory November 10 2003
  1334. Mehmet Aktas Semantic Web and RDF Ontologies October 20 2003 LAITS Lab at GMU
  1335. Choonhan Youn Web Services Based Architecture in Computational Web Portals Syracuse University PhD defense November 7 2003
  1336. Geoffrey Fox Remarks on Education and the Grid NSF October 23 2003
  1337. Geoffrey Fox Grid and Internet Messaging Systems EuroPVM/MPI'03 Venice 30 September 2003
  1338. Geoffrey Fox e-Business e-Science and the Grid Webcast October 3 2003 online by courtesy of Oracle
  1339. Geoffrey Fox What we do in Grids e-Science CyberInfrastructure and Peer-to-Peer Networks Los Alamos September 23 2003
  1340. Geoffrey Fox Remarks on Grids e-Science CyberInfrastructure and Peer-to-Peer Networks Los Alamos September 23 2003
  1341. Marlon Pierce Metadata and the Semantic Web Access Grid Presentation for PET August 29 2003
  1342. Geoffrey Fox Summary of Community Grids Laboratory September 8 2003
  1343. Geoffrey Fox Remarks on Web and Grid Services: OGSA and OGSI UK e-Science All-Hands Meeting Nottingham September 4 2003
  1344. Mary Thomas and Geoffrey Fox Portal Web Services: Support of DOE SciDAC Collaboratories August 20 2003 Argonne National Laboratory
  1345. G. Gunduz A Framework for Aggregating Network Performance in Distributed Brokering Systems Proceedings of the 9th International Conference on Computer, Communication and Control Technologies.CCCT '03 July-August 2003.Orlando Florida
  1346. Geoffrey Fox, Hasan Bulut, Bryan Carpenter, Marlon Pierce, X. Qiu, Ahmet Uyar, Wenjun Wu Portlets and Web Services for Collaboration and Videoconferencing 16 July 2003 at Portals & Portlets 2003 July 14 - 17 2003 e-Science Institute Edinburgh
  1347. Xiahong Qiu Collaborative SVG as a Web Service SVG Open Conference Vancouver July 17 2003
  1348. Mehmet Nacar Grid Computing Environment Shell 2003 International Conference on Internet Computing, Las Vegas June 2003
  1349. Geoffrey Fox, Wenjun Wu Ahmet Uyar, Hasan Bulut A Web Services Framework for Collaboration and Videoconferencing WACE Seattle 22 June 2003
  1350. Sangmi Lee A Modular Data Pipelining Architecture (MDPA) for enabling Universal Accessibility in P2P Grids Florida State University PhD Defense July 3 2003
  1351. Han-Ku Lee Towards Efficient Compilation of the HPJava Language for HPC Florida State University PhD Defense June 12 2003
  1352. Sang Lim Platforms for HPJava: Runtime Support for Scalable Programming in Java Florida State University PhD Defense June 11 2003
  1353. Geoffrey Fox NKS meets the Grid and e-Science NKS2003 Boston June 29 2003
  1354. G Gunduz A Portal Based Approach to Viewing Aggregated Network Performance Data in Distributed Brokering Systems in Proceedings of the 2003 International Conference on Internet Computing Las Vegas June 2003
  1355. Geoffrey Fox, Dennis Gannon Grid Computing Environments GCE Discussion Meeting June 26 2003 Seattle GGF8
  1356. Geoffrey Fox, David Walker e-Science Technology/Middleware (Grid, Cyberinfrastructure) Gap Analysis and OMII SEAG Meeting DTI June 20 2003
  1357. Geoffrey Fox and Marlon Pierce Complexity Computational Environment, integrating data and simulation on the Grid: Multiscale computing JPL June 18 2003
  1358. Mehmet Aktas Semantic Web & Case Based Reasoning JPL June 18 2003
  1359. Marlon Pierce Interoperable Portal Services DoD Users Group Meeting, Seattle, June 12 2003
  1360. Marlon Pierce OKC Tools for XML Metadata Management DoD Users Group Meeting, Seattle, June 12 2003
  1361. Geoffrey Fox iSERVOGrid Architecture Working Group Third ACES Working Group Meeting Brisbane June 5 2003
  1362. Geoffrey Fox and Marlon Pierce Grid Technology Implications for ACES and SERVOGrid Third ACES Working Group Meeting Brisbane June 5 2003
  1363. Marlon Pierce, Choonhan Youn, and Geoffrey Fox Interacting Data Services for Distributed Earthquake Modeling ICCS Melbourne Australia June 4 2003
  1364. Ozgur Balsoy and Marlon Pierce Automating Metadata Services ICCS Melbourne Australia June 4 2003
  1365. Choonhan Youn and Marlon Pierce Building Problem Solving Environments with Application Web Service Toolkits ICCS Melbourne Australia June 4 2003
  1366. Geoffrey Fox Status of Grid Technology/Middleware (e-Science, Cyberinfrastructure) Community Grids Laboratory May 29 2003
  1367. Geoffrey Fox Peripheral Production and Multiparticle Phase Shift Analysis Jefferson Laboratory Workshop on Gluonic Excitations Newport News May 16 2003 http://www.jlab.org/gluonic2003/
  1368. Geoffrey Fox, David Walker e-Science Technology/Middleware (Grid, Cyberinfrastructure) Gap Analysis e-Science Town Meeting Strand Palace Hotel May 14 2003
  1369. Xiaohong Qiu Collaborative SVG as A Web Service Community Grids Laboratory May 1 2003
  1370. Geoffrey Fox ARL Aberdeen April 21 2003 Solving Some Problems in Collaboration
  1371. Geoffrey Fox lectures on Grid Technology April 1-3 2003 CERN in two parts Grid Technology A: Web Services Globus OGSA & Grid Architecture and Grid Technology B: Different Flavors of Grids with some backup material XML and SOAP Examples . The complete set of 5 lectures was begun and ended by Tony Hey. The course was based on book Grid Computing: Making the Global Infrastructure a Reality
  1372. Geoffrey Fox Summary of Grid Portal Architecture Workshop presentation at GGF7 Tokyo Closing Ceremony March 7 2003
  1373. Geoffrey Fox Some Future Semantic Grid Activities CrisisGrid and ServoGrid presentation at GGF7 Tokyo Semantic Grid Meeting March 6 2003
  1374. G.Fox, D. Gannon, M. Pierce, M. Thomas Overview of Grid Computing Environments presentation at GGF7 Tokyo Portal Architecture Workshop March 6 2003 summarizing document of same name
  1375. Geoffrey Fox Grid Federation JXTA Jini etc. presentation at GGF7 Tokyo Service Management Framework Research group March 5 2003
  1376. Geoffrey Fox Activities of the Community Grids Laboratory at Indiana University Lindley Hall February 28 2003
  1377. Collaborative Web Services and Peer-to-peer Grids at Fourth International Symposium on Collaborative Technologies and Systems CTS03 Orlando Florida January 20 2003
  1378. Geoffrey Fox Collaborative Peer-to-peer Grids for Education and Research Purdue University January 15 2003
  1379. Geoffrey Fox and Marlon Pierce Some comments on Portals and Grid Computing Environments PPDG Meeting Caltech December 19 2002
  1380. Geoffrey Fox and Shrideep Pallickara Performance of the Grid Message Infrastructure UK e-Science meeting on Grid Performance Edinburgh December 9 2002 with smaller version here
  1381. Geoffrey Fox and Marlon Pierce GEM Portal and SERVOGrid for Earthquake Science at American Geophysical Union meeting San Francisco December 7 2002
  1382. Geoffrey Fox JavaGrande Update for Sun Labs remote presentation December 4 2002
  1383. Geoffrey Fox Summary of Community Grids Activities for November 25 2002 Meeting
  1384. Geoffrey Fox, talk on Summary of Community Grids Laboratory Research Beihang University, Beijing China October 29 2002
  1385. Geoffrey Fox, talk on Grid at Peking and Beihang Universities, Beijing China October 27-29 2002
  1386. Geoffrey Fox and Marlon Pierce GCE Shell? Global Grid Forum 6 Chicago, October 16 2002
  1387. Geoffrey Fox Collaboration and Web Services Presentation at the University of Illinois at Urbana-Champaign Computer Science Department October 15 2002
  1388. Geoffrey Fox Web Collaboration & Distance Education Technology, Experience & Futures Presentation at ASC September 26 2002
  1389. Geoffrey Fox Peer-to-Peer Grids and Collaborative Environments IBM Research presentation September 23 2002
  1390. Geoffrey Fox Application Requirements for Petaflop Systems Darpa HPCS Meeting September 18 2002
  1391. Geoffrey Fox, Marlon Pierce, Ozgur Balsoy Application Web Service Toolkit: Allow users to quickly add new applications Grid Computing Environments Meeting, Global Grid Forum Edinburgh July 23 2002
  1392. Geoffrey Fox, Shrideep Pallickara JXTA and Web Services and Messages Service Management Frameworks Meeting, Global Grid Forum Edinburgh July 23 2002
  1393. Geoffrey Fox, Shrideep Pallickara, Marlon Pierce Application Web Services and Event / Messaging Systems and with Ozgur Balsoy Application Web Service Toolkit at NeSC meeting July 20 2002 at Glasgow, Scotland
  1394. Geoffrey Fox Grids and Peer-to-Peer Networks for e-Science at SPECTS 2002 meeting San Diego CA July 17 2002
  1395. Geoffrey Fox, Shrideep Pallickara Presentation on The Narada Event Brokering System: Overview and Extensions PDPTA Meeting June 24 2002 Las Vegas
  1396. HPCMO Users Group Conference Tutorial June 8 2002 XML for Science
  1397. Geoffrey Fox Rip Van Winkle looks at Multiparticle Phase Shift Analysis at Partial Wave Analysis workshop June 2-4 2002 CMU http://www.curtismeyer.com/pwa_work/
  1398. Geoffrey Fox Presentation on Some remarks on Portals and Web Services NCSA Alliance All Hands Meeting
  1399. NCSA Alliance Tutorial May 8 2002 XML for Science and Peer-to-Peer Computing
  1400. Geoffrey Fox Presentation on Web Services and Peer-to-Peer Technologies for the Grid ICCS Amsterdam April 24 2002
  1401. Geoffrey Fox internal Presentation on Collaboration and Web Services April 4 2002
  1402. Geoffrey Fox internal Presentation on Garnet Collaboration Framework April 4 2002
  1403. Geoffrey Fox Presentation on Grids for GeoSensors, GeoScience and GeoScientists EarthScope CSIT Meeting March 25 2002 in Snowbird. There is more detail in this longer version
  1404. Geoffrey Fox, Marlon Pierce, Shrideep Pallickara, Choonhan Youn Presentation on Integration of Portals and Web Services at NCSA Alliance meeting March 15 2002
  1405. Marlon Pierce Presentation on Portals, Services, Interfaces at NCSA Alliance meeting March 15 2002
  1406. Marlon Pierce Presentation on The Gateway Computational Web Portal at NCSA Alliance meeting March 15 2002
  1407. Geoffrey Fox diatribe on Collaborative Web Services March 2002
  1408. Geoffrey Fox Presentation on Education as a Web Service: Technology, Experience & Futures San Francisco Feb 26 2002
  1409. Indiana University Tutorial on Web Services and Grids at Global Grid Forum Toronto February 17 2002
  1410. Grid Forum Computing Environments Workshop Dec 6-7 2001: Presentation on Remarks on Web Services
  1411. NASA Ames Information Power Grid Meeting Dec 4-5 2001: Presentation on Peer to Peer Networks and Web Services for a Community Grid
  1412. SC2001 Meeting, Denver November 11-15 2001, Workshop on Grid Web Services: Gateway and Web Services. Presentation on Gateway and Web Services
  1413. Informatics Dean's Advisory Council Presentation , September 22 2001: Informatics and Pervasive Technology Laboratories
  1414. Invited Presentation at IUPUI Sept. 7 2001: Education as a Peer to Peer Grid Service
  1415. Community Grid Approach to Computing September 2001
  1416. Community Grid Approach to Education September 2001
  1417. Presentation at GEC (Geriatric Education Center) distance education meeting August 22 2001 Education as a Grid Service
  1418. ERDC Tutorial on Grid Technologies August 17 2001 at Vicksburg Ms. (one day with M. Pierce)
  1419. Presentation at ACES Maui Meeting July 30 2001 by Geoffrey Fox ACES and Computational Science
  1420. Presentation at DoE Components Meeting July 24 2001 by Geoffrey Fox Architecture of Garnet Collaborative Portal
  1421. Presentation at Grid Forum Computing Environments Meeting July 17 2001 by Geoffrey Fox Remarks on Peer to Peer Grids
  1422. Presentation at APS Computational Physics Meeting at MIT June 25 2001 Physics meets the Virtual University
  1423. Euresco Conference at Castelvecchio Pascoli Italy June 16-21 2001, EuroConference on Problem-Solving Environments for Numerical Mathematics, Science and Engineering Applications, talk by Geoffrey Fox on Peer to Peer Networks including JXTA
  1424. Euresco Conference at Castelvecchio Pascoli Italy June 16-21 2001, EuroConference on Problem-Solving Environments for Numerical Mathematics, Science and Engineering Applications, talk by Geoffrey Fox on Peer to Peer Grids and Collaboration
  1425. Euresco Conference at Castelvecchio Pascoli Italy June 16-21 2001, EuroConference on Problem-Solving Environments for Numerical Mathematics, Science and Engineering Applications, talk by Geoffrey Fox on Object Web Architectures and Portals
  1426. Presentation at Java Grande Meeting Palo Alto June 3 2001 by Geoffrey Fox Peer to Peer Grids and Collaboration

2.6 - Sites

Sites

This page contains links to sites that have been backed up or are still active.

The sites have been backed up with a static site duplicator or have been copied from its original source. As some Web sites wer generated with some specialized software or relied on databases not everything is working. We have tried to preserve most of the information.

Static Web Site Archives

For more static Web site Archives please see

Web Server Backups

NPAC

3 - Staff

Staff

Staff pages.

3.1 - Geoffrey C. Fox

Professor

Geoffrey C. Fox

Geoffrey C. Fox.

The Web Page is located at

https://biocomplexity.virginia.edu/person/geoffrey-fox

3.2 - Gregor von Laszewski

Research Professor

Gregor von Laszewski

Gregor von Laszewski’s Web page is located at

3.3 - Jacques Fleischer

Undergraduate Student

Jacques Fleischer

Biography

Jacques is an undergraduate computer science major in the Computing for Global Challenges program of the Biocomplexity Institute at the University of Virginia. His interests include leveraging artificial intelligence to analyze timeseries; he also uses high performance computing to conduct geospatial AI predictions.

References

Project

The tevelop earthquake benchmark analyzes historical data and forecasts earthquakes with Normalized Nash-Sutcliffe Efficiency (NNSE) as a measure of accuracy. The benchmark is ran several times in parallel on several graphics cards and varying epochs to find the best hyperparameter combination.

The cloudmask benchmark reads satellite imagery and classifies portions of images as cloudy or clear sky. Validation loss and inference accuracy are used to identify which epoch number is ideal for optimal classification.

Resources

Compute Resources: 500 GPU-accelerated Slurm hours

Data Resources: at least 5 TB of space for data storage

3.4 - Clara Grimmelbein

Undergraduate Student

Biography

Clara Grimmelbein is a student at the University of Virginia, class of 2026, pursuing a B.A. in Computer Science and a B.S. in Commerce with a minor in Italian.

References

  • N/A

Project

Candle Uno utilizes deep learning architectures to predict tumor response to single and paired drugs. Candle combats the problems of cellular, molecular, and population problems within cancer. The project is trained with a subset of dose-response data from six data sources. Benchmark Pilot1 (P1) focuses on the molecular features of tumor cells from a singular data source, CCLE, to accelerate the use of effective drugs to cure cancerous cells.

Resources

Compute Resources:

https://github.com/ECP-CANDLE/Benchmarks/blob/develop/Pilot1/Uno/uno_baseline_keras2.py

(to initiate training)

Data Resources:

http://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Pilot1/uno/top_21_auc_1fold.uno.h5

3.5 - Junyang (Eric) He

Undergraduate Student

Junyang (Eric) He is a student in the class of 2025 at the University of Virginia, pursuing a B.S. in Computer Science. He worked as a research intern at UVA Biocomplexity Institute in the summer of 2022 and he is currently conducting research on Deep Learning in Hydrology predictions. His research interests include machine learning, deep learning, and artificial intelligence.

3.6 - Meryem Altin Karagoz

Visiting Graduate Researcher

Biography

Meryem Altin Karagoz joined Computer Engineering department of Sivas Cumhuriyet University Turkey, in 2016, as a Research Assistant. She received a master’s degree in Computer Engineering at Erciyes University in 2019 and is currently Ph.D. student in Computer Engineering at Erciyes University. She is awarded a grant by The Scientific and Technological Research Council of Turkey (TUBITAK) to perform research at University of Virginia. Her research interests are artificial intelligence, deep learning, and medical image analysis.

References

Project

Title: Developing Self-Supervised Learning Models for Reducing the Dependency on Expert Supervision in Medical Image Analysis

Deep Learning methods are capable of learning highly complex mathematical functions using a large number of neural-net layers. Therefore, deep learning models require a large amount of data to learn large numbers of parameters. However, the two main problems encountered in current medical imaging studies with Deep Learning are: (i) lack of annotated datasets and (ii)imbalanced datasets between labels or classes. While limited labeled datasets cause overfitting, an imbalanced dataset between positive and negative samples causes an underfitting problem for deep networks. Thus, deep learning models are challenging to provide high performance in computer vision problems with insufficient data; medical imaging is one of these areas. The problem of generating largescale and public datasets for medical image analysis is difficult to solve in the short term due to practical difficulties such as cost, time, patient privacy, and lack of standard data publication procedures. On the other hand, the problem of an imbalanced dataset can be challenging for generating a large-scale annotated dataset. Therefore, it is an important field for medical image analysis studies that researchers develop Deep Learning strategies to overcome these data constraints by reducing the dependence on expert supervision. In recent years, self-supervised learning (SSL) has gained remarkable attention against lack of datasets owing to pretext task and downstream task mechanisms with prior studies. The pretext task is pre-designed as the former task for learning discriminative visual features on unlabeled data to be used in downstream tasks such as classification, detection, and segmentation. In addition to providing robust and performance-enhancing solutions in the lack of labeled data, self-supervised learning methods allow extraction of distinct signals by using labeled and unlabeled data all together as in an unsupervised manner during the pretext task step. Thus, SSL provides a solution to the problem of a large amount of unlabeled data, which is the most critical problem in medical image tasks. However, there is a noticeable lack of self-supervised learning models for medical image analysis tasks and needs to be improved with further studies. In conclusion, we focus on SSL models to deal with data limitations and enable automated diagnosis and detection systems at the expert level for clinical usage by reducing expert demand for medical image tasks.

Resources needs

Compute:

Data: at least 10 TB of space for data storage.

3.7 - Nate Kimball

Undergraduate Student

Nate Kimball

Nathaniel Kimball is a student at the University of Virginia, class of 2024, pursuing a B.S. in Computer Science with a minor in Applied Mathematics. He is an incoming Global Technology Summer Analyst intern at Bank of America (2023). His interests include artificial intelligence, machine learning, MLOps, stochastic processes, and algorithmic economics.

3.8 - Varun Pavuloori

Undergraduate Student

Varun Pavuloori is an undergraduate student at the University of Virginia, class of 2025, pursuing a B.S. in Computer Science and a minor in Data Science.

3.9 - Arup Sarker

Ph.D. Student

Arup Sarker

Arup Sarker is a student at the University of Virginia, class of 2021, pursuing a Ph.D. in Computer Science. He is working as a research assistant at the UVA biocomplexity Institute where he currently focuses on developing an HPC framework for a distributed environment. In the past, until the middle of last year, he worked on 3D data processing based on point cloud or voxel-based motion planning and control in an autonomous vehicle, as well as security research in IoT Trust computing. Prior to this, he was a Staff Engineer at Samsung R&D Institute Bangladesh Ltd. starting from September 2011. During his tenure, he had the opportunity to work with various cutting-edge technologies that were leading the market. He made significant contributions to the development of the Android platform, particularly on Audio/Video, Frameworks, and Network protocols for transmitting data in mission-critical services, as well as Gear360 and many others. From the beginning of his time at Samsung, all of his work revolved around designing and developing embedded and distributed solutions that required data transmission over networks. Even as a feature phone developer in 2011, he was responsible for the system modules used to transmit calls and messages.

His interests include High-Performance Computing in Distributed Environments, Multi-Level Compiler optimization for parallel programming, Distributed heterogeneous AI architecture, and 3D vision for the autonomous system.

Checkout the detailed profile: https://www.arupsarker.com/

3.10 - Mills W. Staylor

PhD Student

Mills W. Staylor received his BS in Business Management from Virginia Polytechnic Institute and State University (Virginia Tech). He continued his studies at George Mason University where he earned dual MS degrees in Civil, Environmental and Infrastructural Engineering and Software Engineering. After graduate school, Mills worked as a professional software engineer in both public and private sectors. Most recently, he played a pivotal role in the development of an Alexa bridge which provided access to streaming content on Alexa devices. He is currently a PhD student in Computer Science at the University of Virginia and has interests in high performance computing, visualization, and cloud computing.

3.11 - Christopher Zelaya

Undergraduate Student

Christopher Zelaya

Biography

Christopher Zelaya is a student at the University of Virginia, class of 2024, pursuing a B.S. in Computer Science with a minor in Data Science. He is an incoming Software Engineer Intern at Honeywell (2023) and plans to pursue a Masters in Computer Science or Data Science at UVA. His interests include Deep Learning, Algorithms, and AI.

References

  • N/A

Project

State of the art scanning transmission electron microscopes (STEM) produce focused electron beams with atomic dimensions and allow to capture diffraction patterns arising from the interaction of incident electrons with nanoscale material volumes. Backing out the local atomic structure of said materials requires compute- and time-intensive analyses of these diffraction patterns (known as convergent beam electron diffraction, CBED). Traditional analyses of CBED requires iterative numerical solutions of partial differential equations and comparison with experimental data to refine the starting material configuration. This process is repeated anew for every newly acquired experimental CBED pattern and/or probed material.

Resources

Compute Resources: https://github.com/mlcommons/science/tree/main/benchmarks/stemdl

Data Resources: https://doi.ccs.ornl.gov/ui/doi/70

3.12 - Tianle Zhong

PhD Student

Tianle Zhong received his B.Eng. in Computer Science and B.S. in Applied Mathematics at the University of Electronic Science and Technology of China in 2022. He is currently working for his Ph.D. in Computer Science at University of Virginia. His research interests include machine learning system and deep learning compiler, specifically about the optimization and efficiency of large model training.

4 - Tutorials

Tutorials

4.1 - Getting Started with the bii_dsc_community

Getting Started

Contributing your tutorial and experiences

Please contribute to infomall.org as your experiences will help. Please remember that technology evolves fast, and we like to stay up to date by improving information.

Each page as an edit here feature, that you ca use to propose changes. The changes will be reviewed by Gregor and are not automatically posted online.

Once a change is accepted, the Web site will be published and updates are visible. Send an e-mail to Gergor for urgent updates.

Activating your account

Do the following while sending an e-mail to Gregor:

Subject: Activate my account ,

Body: (fill in lastname and firstname. Do not use all caps)

Firstname: 
Lastname:
e-mail:
github.com:

* [ ] Please add me to the `discord` 
* [ ] Please add me to the unix groups:
  * [ ] `biocomplexity`
  * [ ] `nssac_students`
  * [ ] `bii_dsc_community`

Preparing your computer for research

Seee the documentation at

Using Docker on your computer

To isolate your computer form changes and to develop portable code we recommend using docker images. This is especially the case when using GPUs on your computer as this is these days the default distribution mechanism for NVIDIA software for research.

Using Singularity on your computer

As Rivanna is using singularity, it is also beneficial to use singularity on your loacl computer as this can be used to create images for rivanna. However, note that due to the transfer speeds to rivanna the experience may be limited For that reason. we recommend you visit our [https://infomall.org/uva/docs/tutorial/singularity/](Tutorial on Singularity on Rivanna)

Getting an account on Rivanna

Please read

Do not make your account insecure. On Rivanna’s documentation you will find a statement that we do NOT RECOMMEND TO FOLLOW as it is not best security practice and can be handled in almost all cases differently. The statement on the official UVA Rivanna Web Site states:

Sometimes you will need to enable passwordless ssh. We allow passwordless ssh to frontend nodes from UVA IP addresses. Key authentication works by matching two halves of an encrypted keypair. The “public” key is placed within your home directory on the remote server and the “private” key is kept safely on your own workstation. You should treat private keys as securely as you would any password."

Instead you need to use

computer> 
  eval `ssh-agent`
  ssh-add

Using Python

When using anaconda, be careful as it takes over your python instalation and may not provide a level of inconsistant libraries when you do more complex stuff. Evaluate if you need anaconda or not. IN many cases it is best to just use vanilla python and use pip.

You can also switch between anaconda and regular python. for that you DO NOT USE

conda init

Fix or outcomment anaconde from your .bashrc or .zshrc files.

If you are a conda expert, give us some tips and tutorials on this topic.

Always check if you use the correct version of python with

computer>
  which python
  python --version

Please keep in mind: When attending university classes some teachers may give you convenient but inssuficcient instructions on how to use python. They are typically designed to make the use of python easy for a specific class and not necessarily easy for research.

Please keep in mind that you may have python versions that do not work properly on your computer if you have attended classes some years back. You will likely need to update your python. Often its good to unisntall your previous verison and reinstall.

If you need multiple python versions such as teacher A wants version X and wants version Y, this is possible. Just use python virtual environments, containers, or virtual machines. What you chose is your choice.

Using Rivanna

Read

Using Singularity on Rivanna

Read

Using Docker on Rivanna via Singularity

Which they do not document but we do on infomall.org

I will go into this in tutorial. If you already have created a passwordless key, please redo it with a password ….

Onramping Tutorial with Gregor

If you need help on assessing your computer for research you can optionally send the folloing info to me.

os:
size ram:
size hdd/ssd:
free space on hdd/ssd
date purchased:

We observed that when using chrome and pycharm and zoom you may need lots of memory. Shut down all over applications. We recommend 16GB ram these days. However, many students have 8GB which may lead to slowing things down in some cases as you may hit the memory

For example, when Gregor runs chrome and pycharm he uses up 8.1GB RAM, so if you were to have an 8GB machine it would slow down. However, your usage of the RAM may vary dependent on what plugins and which version of software as well as the OS you use.

  • Please make sure to have some space on your computers HDD, send me how much free space you have
  • if windows, please install gitbash before meeting
  • if windows I recommend chocolatey, but be careful what you install
  • make sure you know how to use UVA vpn
  • set up ssh key with ssh-keygen and use password WRITE PASSWORD DOWN
  • set up ~/.ssh/config as
  • upload sshkey to github

Make sure you employ backup strategy on external HDD or google or something like that. I have seen to many computer HDD break and this is standard best practice. We can discuss in meeting.

If anythinig unclear or you have questions let me know we will also go through the sshkey things if you do not understand.

Editor

  • use pycharm (best) on your local computer alternatively vscode
  • learn commandline edtor for rivanna emacs best. alternatives nano, pico, vim

Cloudmesh is useful

You will see that cloudmesh has many features that you will find useful. We focus here on a number of libraries useful for rivanna.

Please create venv, this depends on your os on how to do.

Name it ~/ENV3 (if you do conda do it in whatever fashion conda does, as I do not use conda you can help us writing documentation about it)

activate it and do

computer>
  python -m venv ~/ENV3
  source ~/ENV3
  pip install pip -U
  pip install cloudmesh-common
  pip install cloudmesh-sbatch
  pip install cloudmesh-rivanna
  cms help

On rivanna

computer>
  python -m venv /project/bii_dsc_community/$USER/ENV3
  source /project/bii_dsc_community/$USER/ENV3
  pip install pip -U
  pip install cloudmesh-common
  pip install cloudmesh-sbatch
  pip install cloudmesh-rivanna
  pip install cloudmesh-gpu
  cms help

Make sure you are in Gregors discord

In future learn how to do cloudmesh StopWatch so you conveniently augment your code with timers

Gregor von Laszewski laszewski@gmail.com

4.2 - Rivanna

Rivanna

Rivanna is the University of Virginia’s High-Performance Computing (HPC) system. As a centralized resource and has many software packages available. Currently, the Rivanna supercomputer has 603 nodes with over 20476 cores and 8PB of various storage. Rivanna has multiple nodes equipped with GPUs including RTX2080, RTX3090, K80, P100, V100, A100-40GB, A100-80GB.

Communication

We have a team discord at: uva-bii-community

https://discord.gg/7K2PQqxYz7

to be added, send laszewski@gmail.com an email with subject: Please add me to discord for bii_dsc_community

please subscribe if you work on rivanna and are part of the bii_dsc_community.

Rivanna at UVA

The official Web page for Rivanna is located at

In case you need support you can ask the staff using a ticket system at

It is important that before you use Rivanna to attend a seminar that upon request is given every Wednesday. To sign up, use the link:

Please note that in this introduction we will provide you with additional inforamation that may make the use of Rivanna easier. We encourage you to add to this information and share your tips,

Getting Permissions to use Rivanna

To use Rivanna you need to have special authorization. In case you work with a faculty member you will need to be added to a special group (or multiple) to be able to access it. The faculty member will know which group it is. This is managed via the group management portal by the faculty member. Please do not use the previous link and instead communicate with your faculty member first.

  • Note: For BII work conducted with Geoffrey Fox or Gregor von Laszewski, please contact Gregor at laszewski@gmail.com

TODO: IS THIS THE CASE?

Once you are added to the group, you will receive an invitation email to set up password for the research computing support portal. If you do not recive such an email, please visit the support portal at

TBD

This password is also the password that you will use to log into the system.

END TODO IS THIS THE CASE

After your account is set up, you can try to log in through the Web-based access. Please test it to make sure you have the proper access already.

However, we will typically notuse the online portal but instead use the more advanced batch system as it provides significant advantages for you when managing multiple jobs to Fivanna.

Accessing an HPC Computer via command line

If you need to use X11 on Rivanna you can finde documentation at the rivanna documentation. In case you need to run jupyter notebooks directly on Rivanna, please consult with the Rivanna documentation.

VPN (required)

You can access rivanna via ssh only via VPN. UVA requires you to use the VPN to access any computer on campus. VPN is offered by IT services but oficially only supported for Mac and Windows.

However, if you have a Linux machine you can follow the VPN install instructions for Linux. If you have issues installing it, attend an online support session with the Rivanna staff.

Access via the Web Browser

Rivanna can be accessed right from the Web browser. Although this may be helpful for those with systems where a proper terminal can not be accessed it can not leverage the features of your own desktop or laptop while using for example advanced editors or keeping the file system of your machine in sync with the HPC file system.

Therefore, practical experience shows that you benefit while using a terminal and your own computer for software development.

Additiional documentation by the rivanna system staff is provided at

Access Rivanna from macOS and Linux

To access Rivanna from macOS, use the terminal and use ssh to connect to it. We will provide an in depth configuration tutorial on this later on. We will use the same programs as on Linux and Windows so we have to only provide one documentation and it is uniform across platforms.

Please remember to use

$ eval `ssh-agent`
$ ssh-add

To activate ssh in your terminal

Access Rivanna from Windows

While exploring the various choices for accessing Rivanna from Windows you can use putty and MobaXterm.

However, most recently a possible better choice is available while using gitbash. Git bash is trivial to install. However, you need to read the configuration options carefully. READ CAREFULLY Let us know your options so we can add them here.

To simplify the setup of a Windows computer for research we have prepared a separate

It addresses the installation of gitbash, Python, PyCharm (much better than VSCode), and other useful tools such as chocolate.

With git bash, you get a bash terminal that works the same as a Linux bash terminal and which is similar to the zsh terminal for a Mac.

Set up the connection (mac/Linux)

The first thing to do when trying to connect to Rivanna is to create an ssh key if you have not yet done so.

To do this use the command

ssh-keygen

Please make sure you use a passphrase when generating the key. Make sure to not just skip the passphrase by typing in ENTER but instead use a real not easy to guess passphrase as this is best practice and not in violation violation of security policies. You always can use use ssh-agent and ssh-add so you do not have to repeatedly enter your passphrase.

The ssh-keygen program will generate a public-private keypair in the directory ~/.ssh/id_rsa.pub (public key) and ~/.ssh/id_rsa. Please never share the private key with anyone.

Next, we need to add the public key to Rivanna’s rivanna:~/.ssh/authorized_keys file. The easiest way to do this is to use the program ssh-copy-id.

ssh-copy-id username@rivanna.hpc.virginia.edu

Please use your password when using ssh-copy-id. Your username is your UVA computing id. Now you should be ready to connect with

ssh username@rivanna.hpc.virginia.edu

Commandline editor

Sometimes it is necessary to edit files on Rivanna. For this, we recommend that you learn a command line editor. There are lots of debates on which one is better. When I was young I used vi, but found it too cumbersome. So I spend one-day learning emacs which is just great and all you need to learn. You can install it also on Linux, Mac, and Windows. This way you have one editor with very advanced features that is easy to learn.

If you do not have one day to familiarize yourself with editors such as emacs, vim, or vi, you can use editors such as nano and pico.

The best commandline editor is emacs. It is extremely easy to learn when using just the basics. The advantage is that the same commands also work in the terminal.

Keys Action
CTRL-x c Save in emacs
CTRL-x q Leave
CTRL-x g If something goes wrong
CTRL a Go to beginning line
CTRL e Go to end of line
CTRL k Delete till end of line from curser
cursor Just works ;-)

PyCharm

The best editor to do python development is pyCharm. Install it on your desktop. The education version is free.

VSCode

An inferior editor for python development is VSCode. It can be configured to also use a Remote-SSH plugin.

Moving data from your desktop to Rivanna

To copy a directory use scp

If only a few lines have changed use rsync

To mount Rivannas file system onto your computer use fuse-ssh. This will allow you to for example use pyCharm to directly edit files on Rivanna.

Developers however often also use GitHub to push the code to git and then on Rivanna use pull to get the code from git. This has the advantage that you can use pyCharm on your local system while synchronizing the code via git onto Rivanna.

However often scp and rsync may just be sufficient.

Example Config file

Replace abc2de with your computing id

place this on your computer in ~/.ssh/config

ServerAliveInterval 60

Host rivanna
     User abc2de
     HostName rivanna.hpc.virginia.edu
     IdentityFile ~/.ssh/id_rsa.pub
     
Host b1
     User abc2de
     HostName biihead1.bii.virginia.edu
     IdentityFile ~/.ssh/id_rsa.pub
     
Host b2
     User abc2de
     HostName biihead2.bii.virginia.edu
     IdentityFile ~/.ssh/id_rsa.pub

Adding it allows you to just ssh to the machines with

ssh rivanna
ssh b1
ssh b2

Rivanna’s filesystem

The file systems on Rivanna have some restrictions that are set by system wide policies that you need to be inspecting:

  • TODO: add link here

You can alls see your quote with

rivanna>
  hdquota

we distinguish

  • home directory: /home/<uvaid> or ~
  • /scratch/bii_dsc_community/<uvaid>
  • /project/bii_dsc_community/projectname/<uvaid>

Y In your home directory, you will find system directories and files such as ~/.ssh , ~/.bashrcand ~/.zshrc

The difference in the file systems is explained at

Dealing with limited space under HOME

As we conduct research you may find that the file space in your home directory is insufficient. This is especially the case when using conda. Therefore, it is recommended that you create softlinks from your home directory to a location where you have more space. This is typically somewhere under /project.

We describe next how to relocate some of the directories to /project

In ~/.bashrc, add the following lines, for creating a project directory.

$ vi ~/.bashrc

$ PS1="\w \$"
$ alias project='cd /project/bii_dsc_community/$USER'
$ export PROJECT="/project/bii_dsc_community/$USER"

At the end of the .bashrc file use

$ cd $PROJECT

So you always cd directly into your project directory instead of home.

The home directory only has 50GB. Installing everything on the home directory will exceed the allocation and have problems with any execution. So it’s better to move conda all other package installation directories to $PROJECT.

First, explore what is in your home directory and how much space it consumes with the following commands.

cd $HOME
$ ls -lisa
$ du -h .

Select from this list of directories that you want to move (those that you not already have moved).

Let us assume you want to move the directories .local, .vscode-server, and .conda. Important is that you want to make sure that .conda and .local are moved as they may include lots of files and you may run out of memory quickly. Hence you do next the following.

rivanna>
  $ cd $PROJECT
  $ mv ~/.local .
  $ mv ~/.vscode-server .
  $ mv ~/.conda .

Then create symbolic links to the home directory installed folder.

rivanna>
  $ cd $PROJECT
  $ ln -s $PROJECT/.local ~/.local
  $ ln -s $PROJECT/.vscode-server ~/.vscode-server
  $ ln -s $PROJECT/.conda ~/.conda

Check all symbolic links:

rivanna>
  $ ls -lisa

20407358289   4 lrwxrwxrwx    1 $USER users          40 May  5 10:58 .local -> /project/bii_dsc_community/djy8hg/.local
20407358290   4 lrwxrwxrwx    1 $USER users          48 May  5 10:58 .vscode-server -> /project/bii_dsc_community/djy8hg/.vscode-server

Singularity Cache

In case you use singularity you can build images you need to set the singularity cache. This is due to the fact that the cache usually is created in your home directory and is often far too small for even our small projects. Thus you need to set it as follows

rivanna>
  mkdir -p /project/$USER/.singularity/cache
  export SINGULARITY_CACHEDIR=/project/$USER/.singularity/cache

`

Python

In case you use python venv, do not place them in home but under project.

rivanna>
  module load python3.8
  python -m venv $PROJECT/ENV3
  source $PROJECT/ENV3/bin/activate

If you succeed, you can also place the source line in your .bashrc file.

In case you use conda and python, we also recommend that you create a venv from the conda python, so you have a copy of that in ENV3 and if something goes wrong it is easy to recreate from your default python. Those that use that path ought to improve how to do this here.

Adding cloudmesh rivanna specific commands and tools

On your computer in your ENV3 add the following to enable the commands

computer> 
  pip install pip -U
  pip install cloudmesh-common
  pip install cloudmesh-rivanna
  pip install cloudmesh-sbatch
  pip install cloudmesh-vpn

On Rivanna in ENV3 also add the gpu monitor

computer> 
  pip install pip -U
  pip install cloudmesh-common
  pip install cloudmesh-gpu
  pip install cloudmesh-rivanna
  pip install cloudmesh-sbatch

Note: Please send me a mail to laszewski@gmail.com if any requirements are missing as I may not yet have included all of them in the pip package.

Once you have activated it the cloudmesh rivanna command shows you combinations of SBATCH flags that you can use.

To see them type in

cms rivanna slurm list

To login into a specific node you can say (lest assume you like to log into a k80

cms rivanna login k80

Please be reminded that interactive login is only allowed for debugging all jobs must be submitted through sbatch.

To get the directives template to use that GPU, use

cms rivanna slurm k80

cloudmesh sbatch

Cloudmesh-sbatch is a super cool extension to sbatch allowing you to outomatically run parameters studies while creating permuattions on experiment parameters. At this time we try to create some sampel applications, but you can also ararnge a 30 minute meeting with Gregor so we try setting it up for your application with his help

See also:

cloudmesh vpn command

cloudmesh has a simple commandline vpn command that you can use to switch on and off vpn for UVA (and other vpn’s, we can add that feature ;-))

computer> 
  cms vpn connect
  ... do your work in vpn such as working on rivanna
  cms vpn disconnect
  ... work on your regular network

Load modules

Modules are preconfigured packages that allow you to use a specific software to be loaded into your environment without needing you to install it from source. To find out more about a particular package such as cmake you can use the command

rivanna>
  module spider cmake # check whether cmake is available and details

Load the needed module (you can add version info). Note that some modules are dependent on other modules (clang/10.0.1 depends on gcc/9.2.0 so gcc needs to be loaded first.

rivanna>
  # module load gcc/9.2.0 clang/10.0.1
  module load clanggcc
  module load cmake/3.23.3 git/2.4.1 ninja/1.10.2-py3.8 llvm cuda/11.4.2

check currently loaded modules

rivanna>
  module list

clean all the modules

rivanna>
  module purge

Request GPUs to use interactively

TODO: explain what -A is

rivanna$ ijob -c number_of_cpus
              -A group_name
	      -p queue_name
	      --gres=gpu:gpu_model:number_of_gpus
	      --time=day-hours:minutes:seconds

An example to request 1 cpu with 1 a100 gpu for 10 minutes in ‘dev’ partition is

rivanna$ ijob -c 1 -A bii_dsc_community -p gpu --gres=gpu:a100:1 --time=0-00:10:00

Rivanna has different partitions with different resource availability and charging rate. dev is free but limited to 1 hour for each session/allocation and no GPU is available. To list the different partitons use qlist to check partitions

Last Checked July 28th, note thes values may change.

Queue Total Free Jobs Jobs Time SU
(partition) Cores Cores Running Pending Limit Charge
bii 4640 3331 31 15 7-00:00:00 1
standard 4080 496 1209 5670 7-00:00:00 1
dev 160 86 5 1:00:00 0
parallel 4880 1594 21 3 3-00:00:00 1
instructional 480 280 16 3-00:00:00 1
largemem 144 80 2 1 4-00:00:00 1
gpu 1876 1066 99 210 3-00:00:00 3
bii-gpu 608 542 18 1 3-00:00:00 1
bii-largemem 288 224 7-00:00:00 1

To list the limits, use the command qlimits

Last Checked July 28th, note these values may change.

Queue Maximum Maximum Minimum Maximum Maximum Default Maximum Minimum
(partition) Submit Cores(GPU)/User Cores/Job Mem/Node(MB) Mem/Core(MB) Mem/Core(MB) Nodes/Job Nodes/Job
bii 10000 cpu=400 354000+ 9400 112
standard 10000 cpu=1000 384000+ 9000 1
dev 10000 cpu=16 384000 9000 6000 2
parallel 2000 cpu=1500 4 384000 9600 9000 50 2
instructional 2000 cpu=20 384000 6000 5
largemem 2000 cpu=32 1500000 64000 60000 2
gpu 10000 gres/gpu=32 128000+ 32000 6000 4
bii-gpu 10000 384000+ 9400 12
bii-largemem 10000 1500000 31000 2

Linux commands for HPC

Many useful commands can be found in Gregor’s book at

The following additional commands are quite useful on HPC systems

command description
allocations check available account and balance
hdquota check storage you has used
du -h --max-depth=1 check which directory uses most space
qlist list the queues
qlimits prints the limits of the queues

SLURM Batch Parameters

We present next a number of default parameters for using a variety of GPUs on rivanna. Please note that you may need to adopt some parameters to adjust for cores or memory according to your application.

Running on v100

#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --time=12:00:00
#SBATCH --partition=bii-gpu
#SBATCH --account=bii_dsc_community
#SBATCH --gres=gpu:v100:1
#SBATCH --job-name=MYNAME
#SBATCH --output=%u-%j.out
#SBATCH --error=%u-%j.err

Running on a100-40GB

#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --time=12:00:00
#SBATCH --partition=bii-gpu
#SBATCH --account=bii_dsc_community
#SBATCH --gres=gpu:a100:1
#SBATCH --job-name=MYNAME
#SBATCH --output=%u-%j.out
#SBATCH --error=%u-%j.err

Running on special fox node a100-80GB

#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --time=12:00:00
#SBATCH --partition=bii-gpu
#SBATCH --account=bii_dsc_community
#SBATCH --gres=gpu:a100:1
#SBATCH --job-name=MYNAME
#SBATCH --output=%u-%j.out
#SBATCH --error=%u-%j.err
#SBATCH --reservation=bi_fox_dgx
#SBATCH --constraint=a100_80gb

Some suggestions

When compiling large projects, you may neeed to make surue you have enough time and memory to conduct such compiles. This can be best achieved by using an interactive node, possibly from the large memory partition.

References

Help Support

When requesting help from Gregor or anyone make sure to completely specify the issue, a lot of things cannot be solved if you are not clear on the issue and where it is occurring. Include:

  • The issue you are encountering.
  • Where it is occurring.
  • What you have done to try to resolve the issue.

A good example is:

I ran the application xyz, from url xyz on Rivanna. I placed code in the directory /project/…. or I placed the data in /project/… The download worked and I placed about 600GB. However when I uncompress the data with the command xyz I get the error xyz. What should we do now?

4.3 - Rivanna Pod

Rivanna

This documentation is so far only useful for betatesters. In this group we have

  • Gregor von Laszewski

The rivanna documentation for the basic pod is available at

https://www.rc.virginia.edu/userinfo/rivanna/basepod/

Introducing the NVIDIA DGX BasePOD

Rivanna contains a BasePod with

  • 10 DGX A100 nodes
  • 8 A100 GPU devices
  • 2 TB local node memory (per node)
  • 80 GB GPU memory (per GPU device)

The following Advanced Features have now been enabled on the BasePOD:

  • NVLink for fast multi-GPU communication
  • GPUDirect RDMA Peer Memory for fast multi-node multi-GPU communication
  • GPUDirect Storage with 200 TB IBM ESS3200 (NVMe) SpectrumScale storage array

What this means to you is that the POD is ideal for the following scenarios:

  • The job needs multiple GPUs and/or even multiple nodes.
  • The job (can be single- or multi-GPU) is I/O intensive.
  • The job (can be single- or multi-GPU) requires more than 40 GB GPU memory. (We have 12 A100 nodes in total, 10 of which are the POD and 2 are regular with 40 GB GPU memory per device.)

Detailed specs can be found in the official document (Chapter 3.1):

Accessing the POD

Allocation

A single job can request up to 4 nodes with 32 GPUs. Before running multi-node jobs, please make sure it can scale well to 8 GPUs on a single node.

Slurm script Please include the following lines:

#SBATCH -p gpu
#SBATCH --gres=gpu:a100:X # replace X with the number of GPUs per node
#SBATCH -C gpupod

Open OnDemand

In Optional: Slurm Option write:

-C gpupod

Interactive login

Interactive login to the nodes should be VERY limited and you need to use for most activities the batch queue. In case you need to look at thisng you can use our cloudmesh progarm to do so

Make sure to have vpn enabled and cloumdesh-rivanna installed via pip.

  cms rivanna login a100-pod

Will log you into a node. The time is set by default to 30 minutes. Please immediatly log out after you are done with your work interactive work.

Usage examples

Deep learning

We will be migrating toward NVIDIA’s NGC containers for deep learning frameworks such as PyTorch and TensorFlow, as they have been heavily optimized to achieve excellent multi-GPU performance. These containers have not yet been installed as modules but can be accessed under /share/resources/containers/singularity:

  • pytorch_23.03-py3.sif
  • tensorflow_23.03-tf1-py3.sif
  • tensorflow_23.03-tf2-py3.sif

(NGC has their own versioning scheme. The PyTorch and TensorFlow versions are 2.0.0, 1.15.5, 2.11.0, respectively.)

The singularity command is of the form:

singularity run --nv /path/to/sif python /path/to/python/script

Warning: Distributed training is not automatic! Your code must be parallelizable. If you are not familiar with this concept, please visit:

MPI codes

Please check the manual for your code regarding the relationship between the number of MPI ranks and the number of GPUs. For computational chemistry codes (e.g. VASP, QuantumEspresso, LAMMPS) the two are oftentimes equal, e.g.

#SBATCH --gres=gpu:a100:8
#SBATCH --ntasks-per-node=8

If you are building your own code, please load the modules nvhpc and cuda which provide NVIDIA compilers and CUDA libraries. The compute capability of the POD A100 is 8.0.

For documentation and demos, refer to the Resources section at the bottom of this page: https://developer.nvidia.com/hpc-sdk

We will be updating our website documentation gradually in the near future as we iron out some operational specifics. GPU-enabled modules are now marked with a (g) in the module avail command as shown below:

TODO: output from maodule avail to be included

4.4 - Rivanna and Singularity

Singularity.

Singularity

Singularity is a container runtime that implements a unique security model to mitigate privilege escalation risks and provides a platform to capture a complete application environment into a single file (SIF).

Singularity is often used in HPC centers.

University of Virginia granted us special permission to create Singularity images on rivanna. We discuss here how to build and run singularity images.

Access

In order for you to be able to access singularity and build images, you must be in the following groups:

biocomplexity
nssac_students
bii_dsc_community

To find out if you are, ssh into rivanna and issue the command

$ groups

If any of the groups is missing, please send Gregor an e-mail at laszewski@gmail.com.

Singularity cache

Before you can build images you need to set the singularity cache. This is due to the fact that the cache usually is created in your home directory and is often far too small for even our small projects. Thus you need to set it as follows

rivanna>
  mkdir -p /scratch/$USER/.singularity/cache
  export SINGULARITY_CACHEDIR=/scratch/$USER/.singularity/cache

Please remember that scratch is not permanent. In case you like a bit more permanent location you can alternatively use

rivanna>
  mkdir -p /project/bii_dsc_community/$USER/.singularity/cache
  export SINGULARITY_CACHEDIR=/project/bii_dsc_community/$USER/.singularity/cache

build.def

To build an image you will need a build definition file

We show next an exxample of a simple buid.def file that uses internally a NVIDIA NGC PyTorch container.

Bootstrap: docker
From: nvcr.io/nvidia/pytorch:23.02-py3

Next you can follow the steps that are detailed in https://docs.sylabs.io/guides/3.7/user-guide/definition_files.html#sections

However, for Rivanna we MUST create the image as discussed next.

Creating the Singularity Image

In order for you to create a singularity container from the build.def file please login to either of the following special nodes on Rivanna:

  • biihead1.bii.virginia.edu
  • biihead2.bii.virginia.edu

For example:

ssh $USER@biihead1.bii.virginia.edu

where $USER is your computing ID on Rivanna.

Now that you are logged in to the special node, you can create the singularity image with the following command:

sudo /opt/singularity/3.7.1/bin/singularity build output_image.sif build.def

Note: It is important that you type in only this command. If you modify the name output_image.sif or build.def the command will not work and you will recieve an authorization error.

In case you need to rename the image to a better name please use the mv command.

In case you also need to have a different name other then build.def the following Makefile is very useful. We assume you use myimage.def and myimage.sif. Include it into a makefile such as:

BUILD=myimage.def
IMAGE=myimage.sif

image:
	cp ${BUILD} build.def
	sudo /opt/singularity/3.7.1/bin/singularity build output_image.sif build.def
	cp output_image.sif ${IMAGE}
	make -f clean

clean:
	rm -rf build.def output_image.sif

Having such a Makefile will allow you to use the command

make image

and the image myimage.sif will be created. with make clean you will delete the temporary files build.def and output_image.sif

Create a singularity image for tensorflow

TODO

Work with Singularity container

Now that you have an image, you can use it while using the documentation provided at https://www.rc.virginia.edu/userinfo/rivanna/software/containers/

Run GPU images

To use NVIDIA GPU with Singularity, --nv flag is needed.

singularity exec --nv output_image.sif python myscript.py

TODO: THE NEXT PARAGRAPH IS WRONG

Since Python is defined as the default command to be excuted and singularity passes the argument(s) after the image name, i.e. myscript.py, to the Python interpreter. So the above singularity command is equivalent to

singularity run --nv output_image.sif myscript.py

Run Images Interactively

ijob  -A mygroup -p gpu --gres=gpu -c 1
module purge
module load singularity
singularity shell --nv output_image.sif

Singularity Filesystem on Rivanna

The following paths are exposed to the container by default

  • /tmp
  • /proc
  • /sys
  • /dev
  • /home
  • /scratch
  • /nv
  • /project

Adding Custom Bind Paths

For example, the following command adds the /scratch/$USER directory as an overlay without overlaying any other user directories provided by the host:

singularity run -c -B /scratch/$USER output_image.sif

To add the /home directory on the host as /rivanna/home inside the container:

singularity run -c -B /home:/rivanna/home output_image.sif

FAQ

Adding singularity to slurm scripts

TBD

Running on v100

TBD

Running on a100-40GB

TBD

Running on a100-80GB

TBD

RUnning on special fox node a100-80GB

TBD

4.5 - Rclone on Rivanna

Using Rclone to upload and download from cloud services

Using the Rclone Module on Rivanna

Rclone is a useful tool to upload and download from cloud services such as Google Drive by using the commandline. However, a web browser is required for initial setup, which can be done from the computer that logs into Rivanna.

Setup Rclone on Rivanna

First, load the newer version of module; otherwise, Rivanna loads an incompatible, older version by default. Then, initialize a new rclone configuration and enter the following inputs:

$ module load rclone/1.61.1
$ rclone config
n/s/q> n
name> gdrive
Storage> drive

A client ID is required to create a provision that interfaces with Google Drive. Follow the instructions at https://rclone.org/drive/#making-your-own-client-id to create a client ID and then input the values into Rivanna.

client_id> myCoolID..
client_secret> verySecretClientSecret..
scope> 2 # read only
service_account_file> # just press enter
Edit advanced config?
y) Yes
n) No (default)
y/n> n
Use web browser to automatically authenticate rclone with remote?
y/n> n

Install Rclone on Client Computer

If the computer used to log on to Rivanna is running Windows, and the computer has Chocolatey, then download Rclone using an administrative Git Bash instance with

$ choco install rclone -y

Otherwise, for Linux and macOS, use

$ sudo -v ; curl https://rclone.org/install.sh | sudo bash

Then, after opening a new instance of the terminal, paste the command given into Git Bash and follow the instructions.

Rclone Authentication

In the web browser, click Advanced when google says that they have not verified this app; it is safe and expected. Then click Go to rclone, then Continue.

When Rclone gives the config token, ensure that all new line characters are removed. This can be done by pasting the code into an application such as Notepad and manually ensuring that all characters are on the same line. Otherwise, the code will be split across new prompts, breaking the setup.

This is bad:

sjgnkajdfnkj
fdnskjafnkad
asdfnasjkffd

This is good:

sjgnkajdfnkjfdnskjafnkadasdfnasjkffd

Paste the fixed token into Rivanna.

config_token> myCoolCodeThatHasNoNewLineCharacters
Configure this as a Shared Drive (Team Drive)?

y) Yes
n) No (default)
y/n> n
Keep this "gdrive" remote?
y) Yes this is OK (default)
y/e/d> y
q) Quit config
e/n/d/r/c/s/q> q

An example command to use Rclone is as follows. The flag --drive-shared-with-me restricts the scope to only shared files.

$ rclone copy --drive-shared-with-me gdrive:Colab\ Datasets/EarthquakeDec2020  /scratch/$USER/EarthquakeDec2020 -P

4.6 - Docker

Cybertraining Links

Docker drivers images from NVIDIA

Install GPU drivers in a docker image

NVIDIA GPU drivers can be installed into docker images. As the software may frequently cange, we recommend to look at the Nvidia documentation

An example to add to a debian based Dockerfile to install the GPU drivers (this may be incomplete and you need to check the instructions):

RUN curl -s -L https://nvidia.github.io/nvidia-container-runtime/gpgkey | \
    apt-key add - \ &&
    distribution=$(. /etc/os-release;echo $ID$VERSION_ID) \ &&
    curl -s -L https://nvidia.github.io/nvidia-container-runtime/$distribution/nvidia-container-runtime.list | 
RUN apt-get update \ &&
apt-get install -y nvidia-container-runtime

4.7 - Globus

File transfer with Globus

Getting the Cosmoflow data via globus commandline

Data Directory

We will showcase how to transfer data via globus commandline tools.

In our example we will use the data directory as

export DATA=/project/bii_dsc_community/$USER/cosmoflow/data

Globus Set Up on Rivanna

Rivanna allows to load the Globus file transfer command line tools via the modules command with the following commands. However, prior to executing globus login, please visit https://www.globus.org/ and log in using your UVA credentials.

module load globus_cli
globus login

The globus login method will output a unique link per user that you should paste into a web browser and sign in with using your UVA credentials. Afterwords, the website will present you with a unique sign-in key that you will need to paste back into the command line to verify your login.

After executing globus login your console should look like the following block.

NOTE: this is a unique link generated for the example login, each user will have a different link.

-bash-4.2$globus login
Please authenticate with Globus here:
------------------------------------
https://auth.globus.org/v2/oauth2/authorize?client_id=affbecb5-5f93-404e-b342-957af296dea0&redirect_uri=https%3A%2F%2Fauth.globus.org%2Fv2%2Fweb%2Fauth-code&scope=openid+profile+email+urn%3Aglobus%3Aauth%3Ascope%3Aauth.globus.org%3Aview_identity_set+urn%3Aglobus%3Aauth%3Ascope%3Atransfer.api.globus.org%3Aall&state=_default&response_type=code&access_type=offline&prompt=login
------------------------------------

Enter the resulting Authorization Code here:

Follow the url and input the authorization code to login successfully.

First, verify that you were able to sign in properly, and verify your identity and then search for the source endpoint of the data you want to transfer. In this example, our endpoint is named CosmoFlow benchmark data cosmoUniverse_2019_02_4parE. Please note that the file to be downloaded is 1.7 TB large. Make sure that the system on which you download it has enough space. The following commands will verify your sign in identity and then search for an endpoint within the single quotation marks.

globus get-identities -v 'youremail@gmailprobably.com'
globus endpoint search 'CosmoFlow benchmark data cosmoUniverse_2019_02_4parE'

Each globus endpoint has a unique endpoint ID. In this case our source endpoint ID is:

  • d0b1b73a-efd3-11e9-993f-0a8c187e8c12

Set up a variable ENDPOINT so you can use the endpoint more easily without retyping it. Also set a variable SRC_DIR to indicate the directory with the files to be transferred.

export SRC_ENDPOINT=d0b1b73a-efd3-11e9-993f-0a8c187e8c12
export SRC_DIR=/~/

You can look at the files in the globus endpoint using globus ls to verify that you are looking at the right endpoint.

globus ls $SRC_ENDPOINT

Destination Endpoint Set Up

Rivanna HPC has set a special endpoint for data transfers into the /project, /home, or /scratch directories. The name of this destination endpoint will be UVA Standard Security Storage.

Repeat the above steps with this endpoint and set up the variables including a path variable with the desired path to write to.

globus endpoint search 'UVA Standard Security Storage'
export DEST_ENDPOINT=e6b338df-213b-4d31-b02c-1bc2c628ca07
export DEST_DIR=/dtn/landings/users/u/uj/$USER/project/bii_dsc_community/uja2wd/cosmoflow/

NOTE: We cannot set the path to start at the root level in rivanna and instead need to follow a few steps to find the specific path of where to write to.

To begin, our path must start with /dtn/landings/users/ and is then appended on a unique sequence depending on the users computing ID. The rest of the path is dependent on characters of the users computing ID. As an example, if your computing ID is abc5xy, the next three arguments are /a/ab/abc5xy (first char, first two chars, computing id), at this point the user is essentially in the root level of rivanna and can access /home, /project, or /scratch how they normally would.

Note: If you want to use the web format of Globus to find the path isntead. Follow the below steps to find the desired value of your path var.

  • First sign into the web format of globus
  • Locate file manager on the left side of the screen
  • In the collections box at the top of the screen begin to search for UVA Standard Security Storage
  • Select our destination endpoint
  • Use the GUI tool to select exactly where you wish to write to
  • Copy the path from the box immedietally below collections
  • Write this value to the DEST_DIR variable created above (I have included my path to where I wish to write to)

Initiate the Transfer

Finally, execute the transfer

globus transfer $SRC_ENDPOINT:$SRC_DIR $DEST_ENDPOINT:$DEST_DIR

NOTE: In case your first transfer may have an issue because you need to give globus permission to initiate transfers via the CLI instead of via the web tool. I was given the unique command as follows by my terminal:

-bash-4.2$globus transfer $SRC_ENDPOINT:$SRC_DIR $DEST_ENDPOINT:$DEST_DIR

The collection you are trying to access data on requires you to grant
consent for the Globus CLI to access it.  message: Missing required
data_access consent

Please run

  globus session consent 'urn:globus:auth:scope:transfer.api.globus.org:all[*https://auth.globus.org/scopes/e6b338df-213b-4d31-b02c-1bc2c628ca07/data_access]'

to login with the required scopes

After initiating this command, a similar sign in a verification will be conducted compared to the globus login method where the cli will output a url to follow, the user will sign in, and return a verification code.

After fixing this, remember to re-initiate the transfer with the

globus transfer

command as previously descibed.

Managing Tasks

To monitor the status of active transfers, use

globus task list

or similarly you can use the web tool to verify transfers.

References:

  1. Globus Data Transfer, Rivanna HPC https://www.rc.virginia.edu/userinfo/globus/

4.8 - Cybertraining

Cybertraining Links

A large number of tutorials and modules are avialable in our cybertraining educational activities.

Cybertraining

The main links to our cybertraining material are:

4.9 - Raspberry Pi Cluster

Raspberry Pi Cluster

The main web page for this is at https://piplanet.org

additional tutorials and resources are

4.10 - Create infomall.org

Description on how to create infomall.org

We assume you have hugo installed and cloudmesh-vpn is installed

You need to have python 3

python -m venv ~/ENV3
source ~/ENV3/bin/activate  # if windows in gitbash source ~/ENV3/Scripts/activate
pip install cloudmesh-vpn -U
cms help

Creating a draft

To create a new version of the code from the repository use

rivanna terminal 1>
  git clone git@github.com:DSC-SPIDAL/infomall-org-uva.git
  make serve

To view the content say

rivanna terminal 2>
  make view

Publish

The Web site is currently published by Gregor as follows. No other person must publish it.

computer>
  cms vpn info # make sure vpn is set tu UVA
  cms vpn connect # only needed if vpn is off
  make huge
  make rsync
  cms vpn disconnect #optional to make sure vpn is off

5 - Links

Publications

This page includes the links to the papers and presentations.

Publications

Upload of new documents

  1. The document archive is located on rivanna. For papers they need to be uploaded to

    • /project/bii_dsc/www/infomall/publications

    For presentations, they need to be uploaded to

    • /project/bii_dsc/www/infomall/presentations

  2. After the upload the paper needs to be added to google drive paper list at A presentation need to be added to google drive presentation list

  3. After the papers have been uploaded, Gregor von Laszewski will update the html page that si generated while downloading the paper and html pages as html files from google. The resulting html page needs to be renamed to index.html and uploaded into the directory on rivanna that hod the presentation and publication directories.

Deprecated